Prupe.6G016000_v2.0.a1

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
1154260 .. 1158572
4313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G016000.3

Sequence Viewer

Length: 1314 bp
ATGGCCATAACAGTAGCTATCAACTTAGCTCTAATAAATCCATCGACTTTATTTCATCCCAAGTCTCCGAACCCTTCAAAGCTCAGAGCTTTCACTCTCAGATGCTCCTCCGCCACCTCAACCGCGGTCCCTGATTTGGCAGAAATACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATCTGGAGAGCAAAGTCGTTTGGTGCTTCAGGGACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTCTTACAGACCCTAGTTATGCTGGCCAATTTGTTCTCATGACAAATCCACATATTGGAAATACTGGTGTAAATTTTGATGATCAAGAATCAAGGCAATGTTTCCTTGCTGGTCTAGTGGTTAGAAGTTTAAGTATCAGTACTTCAAATTGGAGATGTGCAGAAACACTTGGTGATTATTTAGCAGAAAGGAATATCATGGGAATTTATGATATTGACACACGTGTTATCACCCGAAGATTAAGGCAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAAGGACAAAAACAGATGAAGAACTATTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGTGTGTCATGTAAGGCCCCTCATGATTGGGTTGATAAAACAAATACAGAGTGGGAATTTAACTCCAGTAAAAGAGGTGGAGAGGCATTCCGTGTTATAGCATATGATTTTGGAATCAAGCATAATATACTCAAGCGCTTGGCTTCCTATGGTTGTAAAATTACTGTTGTGCCTTCAACATGGCCCGCATCAGAGACTCTTAAGATGAAACCAGATGGGGTCCTTTTCAGCAATGGCCCTGGAGACCCATCTGCTGTTCCTTATGCTGTTGAAACAGTTAAGGAGATCATTGGAAAGGTTCCTGCTTTTGGAATCTGCATGGGTCATCAGTTGCTTGGCTTGGCATTAGGTGGTAAAACTTTTAAAATGAAGTTTGGCCACCATGGAGGAAATCATCCAGTCCGTAATCTTTGTAGCGGACATGTTGAGATAAGCGCTCAGAATCACAATTATGCAGTTGACTCTTCATCACTTCCAGAGGGTGTAGAAGTAACTCATGTCAATCTTAACGATGGAAGCTGTGCTGGTCTTGCCTATCCTGCACAAAACATCATGTCTATTCAGTACCACCCTGAAGCATCTCCAGGACCCCATGATTCGGACTATGCTTTTAGGGAATTCATACAGCTGATGAAGAAAGTGAAAGTAAATTCACGAGTGATGGCTGCACTGAGCTTTATTTGA

Protein Analysis

438

Amino Acids

47.7

Weight (kDa)

6.5

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AccII CGCG 1 cut(s) 125
AciI CCGC 5 cut(s) 111, 123, 125, 816, 1047
AcoI YGGCCR 3 cut(s) 3, 301, 1006
AcsI RAATTY 6 cut(s) 276, 349, 480, 686, 1247, 1279
AcuI CTGAAG 3 cut(s) 144, 204, 1224
AcvI CACGTG 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 2 cut(s) 418, 1196
AfeI AGCGCT 2 cut(s) 767, 1066
AfiI CCNNNNNNNGG 5 cut(s) 136, 264, 332, 938, 1228
AflII CTTAAG 1 cut(s) 830
AflIII ACRYGT 3 cut(s) 497, 499, 1051
AgsI TTSAA 7 cut(s) 78, 182, 192, 250, 423, 807, 902
AjnI CCWGG 2 cut(s) 868, 1213
AluBI AGCT 7 cut(s) 17, 29, 82, 89, 1149, 1258, 1305
AluI AGCT 7 cut(s) 17, 29, 82, 89, 1149, 1258, 1305
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 4 cut(s) 69, 597, 818, 867
Aor51HI AGCGCT 2 cut(s) 767, 1066
AoxI GGCC 6 cut(s) 3, 301, 645, 812, 865, 1006
ApeKI GCWGC 1 cut(s) 1295
ApoI RAATTY 6 cut(s) 276, 349, 480, 686, 1247, 1279
AspLEI GCGC 2 cut(s) 768, 1067
AspS9I GGNCC 7 cut(s) 127, 225, 646, 813, 850, 866, 1217
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 3 cut(s) 248, 461, 499
AvaII GGWCC 4 cut(s) 127, 225, 850, 1217
BalI TGGCCA 3 cut(s) 5, 303, 1008
BarI GAAGNNNNNNTAC 2 cut(s) 403, 435
BauI CACGAG 1 cut(s) 1284
BbrPI CACGTG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 1 cut(s) 1282
BccI CCATC 7 cut(s) 49, 179, 521, 839, 886, 1136, 1285
BciT130I CCWGG 2 cut(s) 870, 1215
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 4 cut(s) 69, 597, 818, 867
BfaI CTAG 3 cut(s) 168, 291, 392
BfoI RGCGCY 2 cut(s) 769, 1068
BfrI CTTAAG 1 cut(s) 830
BisI GCNGC 1 cut(s) 1296
BlsI GCNGC 1 cut(s) 1297
BmcAI AGTACT 1 cut(s) 418
Bme1390I CCNGG 3 cut(s) 265, 870, 1215
Bme18I GGWCC 4 cut(s) 127, 225, 850, 1217
BmgT120I GGNCC 7 cut(s) 127, 225, 646, 813, 850, 866, 1217
BmiI GGNNCC 7 cut(s) 129, 226, 227, 648, 851, 930, 1219
BmrFI CCNGG 3 cut(s) 265, 870, 1215
BmsI GCATC 4 cut(s) 92, 154, 827, 1217
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 4 cut(s) 217, 679, 891, 1197
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 867
BsaJI CCNNGG 4 cut(s) 123, 149, 868, 1012
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 264, 332, 938, 1228
Bse1I ACTGG 3 cut(s) 346, 696, 1028
Bse3DI GCAATG 2 cut(s) 380, 868
BseBI CCWGG 2 cut(s) 870, 1215
BseDI CCNNGG 4 cut(s) 123, 149, 868, 1012
BseGI GGATG 3 cut(s) 55, 254, 1024
BseLI CCNNNNNNNGG 5 cut(s) 136, 264, 332, 938, 1228
BseMI GCAATG 2 cut(s) 380, 868
BseMII CTCAG 4 cut(s) 97, 112, 1082, 1292
BseNI ACTGG 3 cut(s) 346, 696, 1028
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 1282
BsgI GTGCAG 3 cut(s) 456, 1155, 1281
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 6 cut(s) 5, 303, 647, 814, 867, 1008
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 3 cut(s) 113, 238, 617
BslI CCNNNNNNNGG 5 cut(s) 136, 264, 332, 938, 1228
BsmAI GTCTC 4 cut(s) 69, 597, 818, 867
BsmFI GGGAC 3 cut(s) 113, 238, 617
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 6 cut(s) 5, 303, 647, 814, 867, 1008
Bso31I GGTCTC 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 2 cut(s) 358, 915
Bsp19I CCATGG 1 cut(s) 1012
BspACI CCGC 5 cut(s) 111, 123, 125, 816, 1047
BspANI GGCC 6 cut(s) 5, 303, 647, 814, 867, 1008
BspCNI CTCAG 4 cut(s) 96, 111, 1081, 1293
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 2 cut(s) 315, 652
BspLI GGNNCC 7 cut(s) 129, 226, 227, 648, 851, 930, 1219
BspTI CTTAAG 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 867
BsrDI GCAATG 2 cut(s) 380, 868
BsrI ACTGG 3 cut(s) 346, 696, 1028
BssECI CCNNGG 4 cut(s) 123, 149, 868, 1012
BssMI GATC 2 cut(s) 358, 915
BssSI CACGAG 1 cut(s) 1284
BssT1I CCWWGG 2 cut(s) 149, 1012
Bst2BI CACGAG 1 cut(s) 1284
Bst2UI CCWGG 2 cut(s) 870, 1215
Bst4CI ACNGT 3 cut(s) 13, 796, 907
Bst6I CTCTTC 1 cut(s) 1099
BstAFI CTTAAG 1 cut(s) 830
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 2 cut(s) 301, 816
BstDEI CTNAG 5 cut(s) 25, 83, 98, 1068, 1301
BstDSI CCRYGG 2 cut(s) 123, 1012
BstF5I GGATG 3 cut(s) 55, 254, 1024
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 2 cut(s) 769, 1068
BstHHI GCGC 2 cut(s) 768, 1067
BstKTI GATC 2 cut(s) 361, 918
BstMAI GTCTC 4 cut(s) 69, 597, 818, 867
BstMBI GATC 2 cut(s) 358, 915
BstMWI GCNNNNNNNGC 2 cut(s) 1160, 1169
BstNI CCWGG 2 cut(s) 870, 1215
BstNSI RCATGY 1 cut(s) 1055
BstSCI CCNGG 3 cut(s) 263, 868, 1213
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 1282
BstV2I GAAGAC 1 cut(s) 161
BsuRI GGCC 6 cut(s) 5, 303, 647, 814, 867, 1008
BtgI CCRYGG 2 cut(s) 123, 1012
BtsCI GGATG 3 cut(s) 55, 254, 1024
BtsIMutI CAGTG 1 cut(s) 1298
Cac8I GCNNGC 2 cut(s) 301, 816
CciI TCATGA 2 cut(s) 315, 652
CfoI GCGC 2 cut(s) 768, 1067
Cfr13I GGNCC 7 cut(s) 127, 225, 646, 813, 850, 866, 1217
Cfr42I CCGCGG 1 cut(s) 126
Csp6I GTAC 2 cut(s) 417, 1195
CviQI GTAC 2 cut(s) 417, 1195
DdeI CTNAG 5 cut(s) 25, 83, 98, 1068, 1301
DpnI GATC 2 cut(s) 360, 917
DpnII GATC 2 cut(s) 358, 915
DraI TTTAAA 1 cut(s) 994
DraIII CACNNNGTG 1 cut(s) 449
EaeI YGGCCR 3 cut(s) 3, 301, 1006
Eam1104I CTCTTC 1 cut(s) 1099
EarI CTCTTC 1 cut(s) 1099
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 149, 1012
Eco31I GGTCTC 1 cut(s) 867
Eco47I GGWCC 4 cut(s) 127, 225, 850, 1217
Eco47III AGCGCT 2 cut(s) 767, 1066
Eco57I CTGAAG 3 cut(s) 144, 204, 1224
Eco72I CACGTG 1 cut(s) 500
EcoO109I RGGNCCY 4 cut(s) 225, 646, 850, 1217
EcoRI GAATTC 1 cut(s) 1247
EcoRII CCWGG 2 cut(s) 868, 1213
EcoT14I CCWWGG 2 cut(s) 149, 1012
ErhI CCWWGG 2 cut(s) 149, 1012
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 3 cut(s) 113, 238, 617
FauI CCCGC 1 cut(s) 823
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 1296
FokI GGATG 3 cut(s) 42, 241, 1011
Fsp4HI GCNGC 1 cut(s) 1296
FspBI CTAG 3 cut(s) 168, 291, 392
GlaI GCGC 2 cut(s) 767, 1066
GluI GCNGC 1 cut(s) 1296
GsuI CTGGAG 4 cut(s) 217, 679, 891, 1197
HaeII RGCGCY 2 cut(s) 769, 1068
HaeIII GGCC 6 cut(s) 5, 303, 647, 814, 867, 1008
HapII CCGG 1 cut(s) 264
HhaI GCGC 2 cut(s) 768, 1067
Hin6I GCGC 2 cut(s) 766, 1065
HinP1I GCGC 2 cut(s) 766, 1065
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HinfI GANTC 7 cut(s) 365, 744, 826, 942, 1072, 1091, 1226
HpaII CCGG 1 cut(s) 264
HphI GGTGA 3 cut(s) 248, 461, 499
Hpy166II GTNNAC 1 cut(s) 1090
Hpy188I TCNGA 7 cut(s) 69, 86, 101, 163, 823, 1071, 1231
Hpy188III TCNNGA 7 cut(s) 196, 272, 316, 362, 653, 1106, 1284
Hpy8I GTNNAC 1 cut(s) 1090
HpyAV CCTTC 2 cut(s) 84, 813
HpyCH4III ACNGT 3 cut(s) 13, 796, 907
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 5 cut(s) 437, 948, 1085, 1172, 1298
HpyF10VI GCNNNNNNNGC 2 cut(s) 1160, 1169
HpyF3I CTNAG 5 cut(s) 25, 83, 98, 1068, 1301
HpySE526I ACGT 1 cut(s) 499
HspAI GCGC 2 cut(s) 766, 1065
KflI GGGWCCC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 358
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 2 cut(s) 358, 915
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 1282
LweI GCATC 4 cut(s) 92, 154, 827, 1217
MaeI CTAG 3 cut(s) 168, 291, 392
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 1 cut(s) 1120
MalI GATC 2 cut(s) 360, 917
MboI GATC 2 cut(s) 358, 915
MboII GAAGA 6 cut(s) 166, 194, 525, 587, 1086, 1276
MhlI GDGCHC 1 cut(s) 554
MlsI TGGCCA 3 cut(s) 5, 303, 1008
MluNI TGGCCA 3 cut(s) 5, 303, 1008
MlyI GAGTC 2 cut(s) 820, 1085
MnlI CCTC 7 cut(s) 118, 127, 660, 698, 706, 1010, 1102
Mox20I TGGCCA 3 cut(s) 5, 303, 1008
MscI TGGCCA 3 cut(s) 5, 303, 1008
MseI TTAA 8 cut(s) 407, 518, 623, 690, 831, 909, 993, 1137
MslI CAYNNNNRTG 1 cut(s) 1080
Msp20I TGGCCA 3 cut(s) 5, 303, 1008
MspA1I CMGCKG 2 cut(s) 125, 1258
MspCI CTTAAG 1 cut(s) 830
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 3 cut(s) 265, 870, 1215
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 2 cut(s) 870, 1215
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 1160, 1169
NciI CCSGG 1 cut(s) 265
NcoI CCATGG 1 cut(s) 1012
NdeI CATATG 1 cut(s) 733
NdeII GATC 2 cut(s) 358, 915
NlaIV GGNNCC 7 cut(s) 129, 226, 227, 648, 851, 930, 1219
NspI RCATGY 1 cut(s) 1055
PagI TCATGA 2 cut(s) 315, 652
PciI ACATGT 1 cut(s) 1051
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 5 cut(s) 365, 744, 942, 1072, 1226
PflMI CCANNNNNTGG 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 1213
PkrI GCNGC 1 cut(s) 1297
PleI GAGTC 2 cut(s) 820, 1085
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 2 cut(s) 820, 1085
Ppu21I YACGTR 1 cut(s) 500
PpuMI RGGWCCY 3 cut(s) 225, 850, 1217
PscI ACATGT 1 cut(s) 1051
Psp5II RGGWCCY 3 cut(s) 225, 850, 1217
Psp6I CCWGG 2 cut(s) 868, 1213
PspCI CACGTG 1 cut(s) 500
PspGI CCWGG 2 cut(s) 868, 1213
PspN4I GGNNCC 7 cut(s) 129, 226, 227, 648, 851, 930, 1219
PspPI GGNCC 7 cut(s) 127, 225, 646, 813, 850, 866, 1217
PspPPI RGGWCCY 3 cut(s) 225, 850, 1217
PvuII CAGCTG 1 cut(s) 1258
RsaI GTAC 2 cut(s) 418, 1196
RsaNI GTAC 2 cut(s) 417, 1195
RseI CAYNNNNRTG 1 cut(s) 1080
SacII CCGCGG 1 cut(s) 126
SaqAI TTAA 8 cut(s) 407, 518, 623, 690, 831, 909, 993, 1137
SatI GCNGC 1 cut(s) 1296
Sau3AI GATC 2 cut(s) 358, 915
Sau96I GGNCC 7 cut(s) 127, 225, 646, 813, 850, 866, 1217
ScaI AGTACT 1 cut(s) 418
SchI GAGTC 2 cut(s) 820, 1085
ScrFI CCNGG 3 cut(s) 265, 870, 1215
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 4 cut(s) 92, 154, 827, 1217
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SinI GGWCC 4 cut(s) 127, 225, 850, 1217
SmiMI CAYNNNNRTG 1 cut(s) 1080
SmlI CTYRAG 2 cut(s) 761, 830
SmoI CTYRAG 2 cut(s) 761, 830
SsiI CCGC 5 cut(s) 111, 123, 125, 816, 1047
SspMI CTAG 3 cut(s) 168, 291, 392
StyD4I CCNGG 3 cut(s) 263, 868, 1213
StyI CCWWGG 2 cut(s) 149, 1012
TaaI ACNGT 3 cut(s) 13, 796, 907
TaiI ACGT 1 cut(s) 502
TaqI TCGA 1 cut(s) 44
TatI WGTACW 1 cut(s) 416
TfiI GAWTC 5 cut(s) 365, 744, 942, 1072, 1226
Tru1I TTAA 8 cut(s) 407, 518, 623, 690, 831, 909, 993, 1137
Tru9I TTAA 8 cut(s) 407, 518, 623, 690, 831, 909, 993, 1137
TscAI CASTG 1 cut(s) 1305
TseI GCWGC 1 cut(s) 1295
TspDTI ATGAA 8 cut(s) 44, 588, 588, 851, 1013, 1086, 1240, 1277
TspGWI ACGGA 2 cut(s) 710, 1022
TspRI CASTG 1 cut(s) 1305
Van91I CCANNNNNTGG 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 830
VpaK11BI GGWCC 4 cut(s) 127, 225, 850, 1217
XapI RAATTY 6 cut(s) 276, 349, 480, 686, 1247, 1279
XceI RCATGY 1 cut(s) 1055
XspI CTAG 3 cut(s) 168, 291, 392
ZrmI AGTACT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.