Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003046

Physical Location & Seq

Genomic Coordinates Reverse (-)

63325953 .. 63329229

Gene Structure 3277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGTTCAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTTGTATGCAGGAGCAGGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGTCTGTGAGATGCATTGAGATTAACAAAGAATCAAAGCTATCCTTTGAGAAGACGGTTGCCCGCCTGCCAAACATAGTAGATAGCAGCATCAGCTGGCATCATGCAGACACTTCTAAGTATCTTTTTATGTACAATCTTGCTTCAAGAAACCAGTACTTCAAAAGTAGGCATTCCCACCTTTCATATGAATCCAGCCTGCCTCCATTTGGAGTTCATCCGCCTTCTTTTGGCTATCAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACACAAAGGATGTGAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGGATTTCTTCAGAAGAGCCATCGGATATCTACATGTTCAATGGAATGGCAGAGCTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGAAGCTTGACTGTTGTTAATACATTTGGCTCATTTGCACTAGTCATGCTTTTCGCTTTGGGGGGCTTTGTCCTGTCAAGACGTAAAAATCTAAAAAATATAAAGAAATGGTGGATATGGGGCTACCGGATATCACCTTTGATGTATGGGCAGAATGCAATTGTAGTTAATGAATTCATTGGCAAGAGCTGGTCACATGTTCTTCCAAACTCAAACGAATCATTCGGAGTTGAAATTCTGAAATCTCGTGGATTTCGTACGCATGCATATTGGTATTGGATTGGCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_sm_chain GATase

Protein Analysis

328

Amino Acids

37.67

Weight (kDa)

9.74

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	167 - 235	3e-12	ABC-2 type transporter
ABC2_membrane	PF01061	232 - 291	1e-09	ABC-2 type transporter
PDR_assoc	PF08370	296 - 328	2.8e-09	Plant PDR ABC transporter associated

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27740
fragaria_vesca	FvH4_3g43670 FvH4_3g43670 FvH4_5g29030 FvH4_5g29030 FvH4_5g29030
malus_domestica	MD03G1020600.v1.1 MD11G1021800.v1.1 MD15G1342500.v1.1
prunus_persica	Prupe.6G016000_v2.0.a1 Prupe.6G016000_v2.0.a1 Prupe.6G163300_v2.0.a1
pyrus_communis	pycom03g01750 pycom11g01770
rosa_chinensis	RchiOBHm_Chr2g0150151 RchiOBHm_Chr5g0078331
rosa_laevigata	RLG00000020471 RLG00000036765 RLG00000036767
rosa_multiflora	Rmu_sc0000631.1_g000032 Rmu_sc0009445.1_g000001 Rmu_ssc0000020.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003910 Rroxscaffold_1G00003930 Rroxscaffold_2G00097400
rosa_rugosa	Rorug02G0419400 Rorug05G0460000
rosa_samantha	Rh2AG478200 Rh2CG464400 Rh2DG499600 Rh5AG513900 Rh5AG514000 Rh5BG536900 Rh5DG548500
rosa_wichuraiana	Rw2G039040 Rw5G047700 Rw5G047720 Rw5G047860

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AarI	CACCTGC	1 cut(s)	47
Acc36I	ACCTGC	2 cut(s)	47, 87
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	2 cut(s)	160, 317
AclWI	GGATC	2 cut(s)	613, 677
AcsI	RAATTY	2 cut(s)	869, 930
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	4 cut(s)	230, 254, 380, 955
AfiI	CCNNNNNNNGG	3 cut(s)	305, 326, 692
AflIII	ACRYGT	2 cut(s)	498, 892
AgsI	TTSAA	6 cut(s)	8, 243, 259, 505, 638, 929
AhlI	ACTAGT	1 cut(s)	736
AluBI	AGCT	7 cut(s)	136, 192, 520, 541, 568, 702, 885
AluI	AGCT	7 cut(s)	136, 192, 520, 541, 568, 702, 885
Alw21I	GWGCWC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	613, 677
Aor13HI	TCCGGA	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	80, 183, 568
ApoI	RAATTY	2 cut(s)	869, 930
AspLEI	GCGC	1 cut(s)	983
AsuHPI	GGTGA	3 cut(s)	619, 652, 822
BauI	CACGAG	2 cut(s)	369, 942
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	3 cut(s)	67, 195, 555
BccI	CCATC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	1 cut(s)	737
BfmI	CTRYAG	1 cut(s)	531
BfuAI	ACCTGC	2 cut(s)	47, 87
BisI	GCNGC	3 cut(s)	81, 184, 569
BlsI	GCNGC	3 cut(s)	82, 185, 570
BmcAI	AGTACT	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	611
BmsI	GCATC	4 cut(s)	38, 98, 195, 205
BpiI	GAAGAC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	584
BsaWI	WCCGGW	2 cut(s)	439, 822
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 45, 48, 75
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 326, 692
Bse1I	ACTGG	2 cut(s)	250, 545
BseAI	TCCGGA	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	584
BseGI	GGATG	3 cut(s)	313, 400, 448
BseLI	CCNNNNNNNGG	3 cut(s)	305, 326, 692
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	250, 545
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	3 cut(s)	67, 195, 555
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	440, 602, 823
BsiWI	CGTACG	1 cut(s)	953
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	3 cut(s)	305, 326, 692
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	2 cut(s)	268, 856
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp13I	TCCGGA	1 cut(s)	439
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	618, 682
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	2 cut(s)	160, 317
BspCNI	CTCAG	1 cut(s)	388
BspEI	TCCGGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	611
BspMI	ACCTGC	2 cut(s)	47, 87
BspPI	GGATC	2 cut(s)	613, 677
BspQI	GCTCTTC	2 cut(s)	474, 578
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	250, 545
BssECI	CCNNGG	1 cut(s)	584
BssMI	GATC	2 cut(s)	618, 682
BssSI	CACGAG	2 cut(s)	369, 942
BssT1I	CCWWGG	1 cut(s)	584
Bst2BI	CACGAG	2 cut(s)	369, 942
Bst4CI	ACNGT	2 cut(s)	154, 709
Bst6I	CTCTTC	3 cut(s)	427, 474, 578
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	228
BstC8I	GCNNGC	5 cut(s)	160, 164, 194, 296, 960
BstDEI	CTNAG	2 cut(s)	213, 375
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	313, 400, 448
BstHHI	GCGC	1 cut(s)	983
BstKTI	GATC	2 cut(s)	621, 685
BstMBI	GATC	2 cut(s)	618, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 189, 565, 602
BstNSI	RCATGY	3 cut(s)	502, 896, 962
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	67, 195, 555
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	3 cut(s)	313, 400, 448
BtsIMutI	CAGTG	1 cut(s)	552
BveI	ACCTGC	2 cut(s)	47, 87
Cac8I	GCNNGC	5 cut(s)	160, 164, 194, 296, 960
CfoI	GCGC	1 cut(s)	983
Csp6I	GTAC	4 cut(s)	229, 253, 379, 954
CviAII	CATG	8 cut(s)	200, 499, 585, 606, 742, 893, 959, 984
CviQI	GTAC	4 cut(s)	229, 253, 379, 954
DdeI	CTNAG	2 cut(s)	213, 375
DpnI	GATC	2 cut(s)	620, 684
DpnII	GATC	2 cut(s)	618, 682
Eam1104I	CTCTTC	3 cut(s)	427, 474, 578
EarI	CTCTTC	3 cut(s)	427, 474, 578
EciI	GGCGGA	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	584
Eco32I	GATATC	2 cut(s)	493, 828
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	869
EcoRV	GATATC	2 cut(s)	493, 828
EcoT14I	CCWWGG	1 cut(s)	584
EcoT22I	ATGCAT	2 cut(s)	113, 964
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	8 cut(s)	203, 502, 588, 609, 745, 896, 962, 987
FalI	AAGNNNNNCTT	4 cut(s)	125, 157, 557, 589
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	8 cut(s)	199, 498, 584, 605, 741, 892, 958, 983
FauI	CCCGC	1 cut(s)	167
FauNDI	CATATG	2 cut(s)	283, 592
Fnu4HI	GCNGC	3 cut(s)	81, 184, 569
FokI	GGATG	3 cut(s)	300, 407, 455
Fsp4HI	GCNGC	3 cut(s)	81, 184, 569
FspBI	CTAG	1 cut(s)	737
GlaI	GCGC	1 cut(s)	982
GluI	GCNGC	3 cut(s)	81, 184, 569
HapII	CCGG	3 cut(s)	440, 602, 823
HhaI	GCGC	1 cut(s)	983
Hin1II	CATG	8 cut(s)	203, 502, 588, 609, 745, 896, 962, 987
Hin6I	GCGC	1 cut(s)	981
HinP1I	GCGC	1 cut(s)	981
HindIII	AAGCTT	2 cut(s)	539, 700
HinfI	GANTC	3 cut(s)	128, 287, 914
HpaII	CCGG	3 cut(s)	440, 602, 823
HphI	GGTGA	3 cut(s)	619, 652, 822
Hpy188I	TCNGA	6 cut(s)	68, 361, 478, 490, 923, 936
Hpy188III	TCNNGA	4 cut(s)	243, 440, 616, 774
HpyAV	CCTTC	1 cut(s)	330
HpyCH4III	ACNGT	2 cut(s)	154, 709
HpyCH4IV	ACGT	1 cut(s)	778
HpyCH4V	TGCA	8 cut(s)	50, 96, 111, 203, 596, 734, 854, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 189, 565, 602
HpyF3I	CTNAG	2 cut(s)	213, 375
HpySE526I	ACGT	1 cut(s)	778
Hsp92II	CATG	8 cut(s)	203, 502, 588, 609, 745, 896, 962, 987
HspAI	GCGC	1 cut(s)	981
Kpn2I	TCCGGA	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	618, 682
LguI	GCTCTTC	2 cut(s)	474, 578
LmnI	GCTCC	3 cut(s)	26, 53, 615
Lsp1109I	GCAGC	3 cut(s)	67, 195, 555
LweI	GCATC	4 cut(s)	38, 98, 195, 205
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	1 cut(s)	778
MaeIII	GTNAC	1 cut(s)	888
MalI	GATC	2 cut(s)	620, 684
MboI	GATC	2 cut(s)	618, 682
MboII	GAAGA	7 cut(s)	160, 444, 465, 491, 565, 708, 890
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	3 cut(s)	855, 869, 930
MmeI	TCCRAC	1 cut(s)	673
MnlI	CCTC	6 cut(s)	30, 309, 344, 393, 623, 633
Mph1103I	ATGCAT	2 cut(s)	113, 964
MroI	TCCGGA	1 cut(s)	439
MseI	TTAA	4 cut(s)	120, 338, 714, 864
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	3 cut(s)	440, 602, 823
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	2 cut(s)	268, 856
MwoI	GCNNNNNNNGC	4 cut(s)	35, 189, 565, 602
NcoI	CCATGG	1 cut(s)	584
NdeI	CATATG	2 cut(s)	283, 592
NdeII	GATC	2 cut(s)	618, 682
NlaIII	CATG	8 cut(s)	203, 502, 588, 609, 745, 896, 962, 987
NlaIV	GGNNCC	1 cut(s)	611
NmuCI	GTSAC	1 cut(s)	888
NsiI	ATGCAT	2 cut(s)	113, 964
NspI	RCATGY	3 cut(s)	502, 896, 962
PaeI	GCATGC	1 cut(s)	962
PaqCI	CACCTGC	1 cut(s)	47
PciI	ACATGT	2 cut(s)	498, 892
PciSI	GCTCTTC	2 cut(s)	474, 578
PcsI	WCGNNNNNNNCGW	1 cut(s)	949
PctI	GAATGC	2 cut(s)	268, 856
PfeI	GAWTC	3 cut(s)	128, 287, 914
Pfl23II	CGTACG	1 cut(s)	953
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	82, 185, 570
PscI	ACATGT	2 cut(s)	498, 892
PsiI	TTATAA	1 cut(s)	555
PspLI	CGTACG	1 cut(s)	953
PspN4I	GGNNCC	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	618
PvuII	CAGCTG	1 cut(s)	192
RsaI	GTAC	4 cut(s)	230, 254, 380, 955
RsaNI	GTAC	4 cut(s)	229, 253, 379, 954
SapI	GCTCTTC	2 cut(s)	474, 578
SaqAI	TTAA	4 cut(s)	120, 338, 714, 864
SatI	GCNGC	3 cut(s)	81, 184, 569
Sau3AI	GATC	2 cut(s)	618, 682
ScaI	AGTACT	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	4 cut(s)	38, 98, 195, 205
SfcI	CTRYAG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SpeI	ACTAGT	1 cut(s)	736
SphI	GCATGC	1 cut(s)	962
Sse9I	AATT	3 cut(s)	855, 869, 930
SsiI	CCGC	2 cut(s)	160, 317
SspMI	CTAG	1 cut(s)	737
StyI	CCWWGG	1 cut(s)	584
TaaI	ACNGT	2 cut(s)	154, 709
TaiI	ACGT	1 cut(s)	781
TaqI	TCGA	1 cut(s)	524
TasI	AATT	3 cut(s)	855, 869, 930
TatI	WGTACW	3 cut(s)	228, 252, 378
TfiI	GAWTC	3 cut(s)	128, 287, 914
Tru1I	TTAA	4 cut(s)	120, 338, 714, 864
Tru9I	TTAA	4 cut(s)	120, 338, 714, 864
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	888
TseI	GCWGC	3 cut(s)	80, 183, 568
Tsp45I	GTSAC	1 cut(s)	888
TspDTI	ATGAA	6 cut(s)	270, 300, 302, 459, 862, 882
TspRI	CASTG	1 cut(s)	552
Van91I	CCANNNNNTGG	1 cut(s)	692
XapI	RAATTY	2 cut(s)	869, 930
XceI	RCATGY	3 cut(s)	502, 896, 962
XspI	CTAG	1 cut(s)	737
ZrmI	AGTACT	1 cut(s)	254
Zsp2I	ATGCAT	2 cut(s)	113, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.