Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003046

Physical Location & Seq

Genomic Coordinates Forward (+)

86855832 .. 86859779

Gene Structure 3948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG513900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCACAGCAGCTGTCAACTTCGCCCTGGTAAAGTCGTCGCCTTTCTTTGTTCCCAAGCCTCAAAACCCTTCAAGGCTTAGGGTTTTCACTCTCCGATGCTCCTCCGCCACCGCCAATGCCGTCTCAGAATTGTCCGAAAGCCCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATATGGAGAGCAAAGTCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGCGTATCAAGAAATTATTACAGACCCGAGTTATGCTGGCCAATTTGTCCTAATGACAAACCCCCAAATTGGAAATACTGGTGTAAATTTTGATGATGAAGAATCAAGGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATTATAGATGTGCAGAAACTCTTGGTGATTATTTAGCAAAAAGGAATATTATGGGAATTTATGATGTTGACACACGGGCTATCACCTGCAGATTAAGGCAAGATGGAAGCCTTATTGGTGTTTTGGGCACAGAAGAGACCAAAACAGATGAGGAACTATTGGAAATGTCTCGTTCATGGGACACTGTTGGGCTTGATTTAGTAAGTGGCGTGTCATGCAAGACCCCTCATGAGTGGGTTGATAAAACCAATTCTGAGTGGGAATTTATGTCCAAAAGAAAAGATGGAGAGGCTTTTTGTGTTGTTGCATATGATTTTGGAATCAAGAGCAACATACTTAGGCGATTGGCTTCCTATGGCTGCAAAATTACTGTGGTTCCTTCAACATGGCCAGCATCAGAGACTCTTAAGATGAAACCAGATGGGGCAGTTGGAAAAAAGTATATAAGGCTCTATAGTGCTTCATTGTCAGAGGAACTCTATCCGCATACTGAAACCATGCTTTGCAACTCAAGTCAGGTTGATCTTGACAATGTAGATGACAAAGAATTGCCGGAGGTGCAGAACTTAGAATTTCTTGACTGCATATTAGAGGAAGGTGACATGCTTTATATCCCACCAAAGTGGTGGCACTATGTGCGGTCTCTGACAACAAGTATGTCGGTTAGCTTTTGGTGGAGTGATTATGACAGTTCAGCTACGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_sm_chain GATase

Protein Analysis

375

Amino Acids

41.85

Weight (kDa)

4.83

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_sm_chain	PF00988	57 - 181	1e-45	Carbamoyl-phosphate synthase small chain, CPSase domain
Cupin_8	PF13621	284 - 368	1.2e-18	Cupin-like domain
JmjC_2	PF08007	316 - 364	7.6e-09	JmjC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27740
fragaria_vesca	FvH4_3g43670 FvH4_3g43670 FvH4_5g29030 FvH4_5g29030 FvH4_5g29030
malus_domestica	MD03G1020600.v1.1 MD11G1021800.v1.1 MD15G1342500.v1.1
prunus_persica	Prupe.6G016000_v2.0.a1 Prupe.6G016000_v2.0.a1 Prupe.6G163300_v2.0.a1
pyrus_communis	pycom03g01750 pycom11g01770
rosa_chinensis	RchiOBHm_Chr2g0150151 RchiOBHm_Chr5g0078331
rosa_laevigata	RLG00000020471 RLG00000036765 RLG00000036767
rosa_multiflora	Rmu_sc0000631.1_g000032 Rmu_sc0009445.1_g000001 Rmu_ssc0000020.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003910 Rroxscaffold_1G00003930 Rroxscaffold_2G00097400
rosa_rugosa	Rorug02G0419400 Rorug05G0460000
rosa_samantha	Rh2AG478200 Rh2CG464400 Rh2DG499600 Rh5AG513900 Rh5AG514000 Rh5BG536900 Rh5DG548500
rosa_wichuraiana	Rw2G039040 Rw5G047700 Rw5G047720 Rw5G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	515
AccII	CGCG	1 cut(s)	263
AciI	CCGC	5 cut(s)	108, 114, 261, 905, 1060
AcoI	YGGCCR	3 cut(s)	3, 298, 809
AcsI	RAATTY	4 cut(s)	346, 477, 683, 992
AcuI	CTGAAG	2 cut(s)	141, 201
AdeI	CACNNNGTG	1 cut(s)	1057
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	329
AflII	CTTAAG	1 cut(s)	827
AgsI	TTSAA	6 cut(s)	75, 179, 189, 247, 420, 804
AjnI	CCWGG	1 cut(s)	27
AleI	CACNNNNGTG	1 cut(s)	1042
AluBI	AGCT	3 cut(s)	14, 1089, 1118
AluI	AGCT	3 cut(s)	14, 1089, 1118
Alw26I	GTCTC	5 cut(s)	130, 551, 594, 815, 1068
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	3 cut(s)	3, 298, 809
ApeKI	GCWGC	2 cut(s)	11, 780
ApoI	RAATTY	4 cut(s)	346, 477, 683, 992
AsuHPI	GGTGA	4 cut(s)	245, 458, 496, 1031
AvaI	CYCGRG	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	551
BalI	TGGCCA	3 cut(s)	5, 300, 811
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	23, 767
BccI	CCATC	4 cut(s)	176, 518, 698, 836
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	5 cut(s)	130, 551, 594, 815, 1068
BfaI	CTAG	2 cut(s)	165, 389
BfmI	CTRYAG	2 cut(s)	508, 874
BfrI	CTTAAG	1 cut(s)	827
BfuAI	ACCTGC	1 cut(s)	515
BisI	GCNGC	2 cut(s)	12, 781
BlsI	GCNGC	2 cut(s)	13, 782
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	29
BmeT110I	CYCGRG	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	223, 798
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	89, 151, 824
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	916
BsaI	GGTCTC	2 cut(s)	551, 1068
BsaJI	CCNNGG	3 cut(s)	27, 146, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	27, 146, 379
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMII	CTCAG	2 cut(s)	141, 666
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	23, 767
BsgI	GTGCAG	2 cut(s)	453, 1001
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	3 cut(s)	5, 300, 811
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	5 cut(s)	130, 551, 594, 815, 1068
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	5, 300, 811
Bso31I	GGTCTC	2 cut(s)	551, 1068
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	393, 943
BspACI	CCGC	5 cut(s)	108, 114, 261, 905, 1060
BspANI	GGCC	3 cut(s)	5, 300, 811
BspCNI	CTCAG	2 cut(s)	140, 667
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	2 cut(s)	223, 798
BspMAI	CTGCAG	1 cut(s)	512
BspMI	ACCTGC	1 cut(s)	515
BspTI	CTTAAG	1 cut(s)	827
BspTNI	GGTCTC	2 cut(s)	551, 1068
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	3 cut(s)	27, 146, 379
BssMI	GATC	2 cut(s)	393, 943
BssT1I	CCWWGG	2 cut(s)	146, 379
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	607, 793, 1112
Bst6I	CTCTTC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	827
BstAPI	GCANNNNNTGC	1 cut(s)	1057
BstC8I	GCNNGC	2 cut(s)	298, 813
BstDEI	CTNAG	5 cut(s)	80, 127, 675, 758, 988
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	2 cut(s)	396, 946
BstMAI	GTCTC	5 cut(s)	130, 551, 594, 815, 1068
BstMBI	GATC	2 cut(s)	393, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 636, 979, 1057
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	1027
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	2 cut(s)	508, 874
BstSLI	GKGCMC	1 cut(s)	551
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	23, 767
BstV2I	GAAGAC	1 cut(s)	158
BstXI	CCANNNNNNTGG	2 cut(s)	1044, 1047
BsuRI	GGCC	3 cut(s)	5, 300, 811
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	377, 603
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	298, 813
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	6 cut(s)	597, 636, 650, 807, 919, 1024
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	5 cut(s)	80, 127, 675, 758, 988
DpnI	GATC	2 cut(s)	395, 945
DpnII	GATC	2 cut(s)	393, 943
DraIII	CACNNNGTG	1 cut(s)	1057
EaeI	YGGCCR	3 cut(s)	3, 298, 809
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	146, 379
Eco31I	GGTCTC	2 cut(s)	551, 1068
Eco57I	CTGAAG	2 cut(s)	141, 201
Eco88I	CYCGRG	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	2 cut(s)	146, 379
ErhI	CCWWGG	2 cut(s)	146, 379
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	6 cut(s)	600, 639, 653, 810, 922, 1027
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	6 cut(s)	596, 635, 649, 806, 918, 1023
FauNDI	CATATG	1 cut(s)	730
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	12, 781
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	12, 781
FspBI	CTAG	2 cut(s)	165, 389
GluI	GCNGC	2 cut(s)	12, 781
HaeIII	GGCC	3 cut(s)	5, 300, 811
HapII	CCGG	1 cut(s)	974
Hin1II	CATG	6 cut(s)	600, 639, 653, 810, 922, 1027
HincII	GTYRAC	2 cut(s)	19, 490
HindII	GTYRAC	2 cut(s)	19, 490
HinfI	GANTC	3 cut(s)	362, 741, 823
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	4 cut(s)	245, 458, 496, 1031
Hpy166II	GTNNAC	2 cut(s)	19, 490
Hpy188I	TCNGA	9 cut(s)	98, 130, 139, 160, 398, 676, 820, 892, 1068
Hpy188III	TCNNGA	7 cut(s)	219, 269, 650, 745, 947, 998, 1125
Hpy8I	GTNNAC	2 cut(s)	19, 490
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	81, 810, 1010
HpyCH4III	ACNGT	3 cut(s)	607, 793, 1112
HpyCH4IV	ACGT	1 cut(s)	1121
HpyCH4V	TGCA	8 cut(s)	434, 510, 639, 728, 783, 927, 982, 1005
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 636, 979, 1057
HpyF3I	CTNAG	5 cut(s)	80, 127, 675, 758, 988
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	6 cut(s)	600, 639, 653, 810, 922, 1027
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	393, 943
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	2 cut(s)	23, 767
LweI	GCATC	3 cut(s)	89, 151, 824
MaeI	CTAG	2 cut(s)	165, 389
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	1 cut(s)	1019
MalI	GATC	2 cut(s)	395, 945
MboI	GATC	2 cut(s)	393, 943
MboII	GAAGA	4 cut(s)	163, 191, 371, 566
MhlI	GDGCHC	1 cut(s)	551
MlsI	TGGCCA	3 cut(s)	5, 300, 811
MluNI	TGGCCA	3 cut(s)	5, 300, 811
MlyI	GAGTC	1 cut(s)	817
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	8 cut(s)	72, 115, 565, 657, 703, 886, 970, 1006
Mox20I	TGGCCA	3 cut(s)	5, 300, 811
MscI	TGGCCA	3 cut(s)	5, 300, 811
MseI	TTAA	3 cut(s)	404, 515, 828
MslI	CAYNNNNRTG	1 cut(s)	1042
Msp20I	TGGCCA	3 cut(s)	5, 300, 811
MspA1I	CMGCKG	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	4 cut(s)	11, 636, 979, 1057
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	2 cut(s)	393, 943
NlaIII	CATG	6 cut(s)	600, 639, 653, 810, 922, 1027
NlaIV	GGNNCC	2 cut(s)	223, 798
NmuCI	GTSAC	1 cut(s)	1019
NspI	RCATGY	1 cut(s)	1027
OliI	CACNNNNGTG	1 cut(s)	1042
PagI	TCATGA	1 cut(s)	649
PaqCI	CACCTGC	1 cut(s)	515
PfeI	GAWTC	2 cut(s)	362, 741
PkrI	GCNGC	2 cut(s)	13, 782
PleI	GAGTC	1 cut(s)	817
PpsI	GAGTC	1 cut(s)	817
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	223, 798
PstI	CTGCAG	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	1042
SaqAI	TTAA	3 cut(s)	404, 515, 828
SatI	GCNGC	2 cut(s)	12, 781
Sau3AI	GATC	2 cut(s)	393, 943
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	817
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	8 cut(s)	16, 509, 942, 981, 1021, 1091, 1120, 1124
SfaNI	GCATC	3 cut(s)	89, 151, 824
SfcI	CTRYAG	2 cut(s)	508, 874
SmiMI	CAYNNNNRTG	1 cut(s)	1042
SmlI	CTYRAG	2 cut(s)	827, 931
SmoI	CTYRAG	2 cut(s)	827, 931
SsiI	CCGC	5 cut(s)	108, 114, 261, 905, 1060
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	2 cut(s)	165, 389
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	2 cut(s)	146, 379
TaaI	ACNGT	3 cut(s)	607, 793, 1112
TaiI	ACGT	1 cut(s)	1124
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	362, 741
Tru1I	TTAA	3 cut(s)	404, 515, 828
Tru9I	TTAA	3 cut(s)	404, 515, 828
TscAI	CASTG	2 cut(s)	377, 610
TseFI	GTSAC	1 cut(s)	1019
TseI	GCWGC	2 cut(s)	11, 780
Tsp45I	GTSAC	1 cut(s)	1019
TspDTI	ATGAA	4 cut(s)	372, 585, 848, 873
TspRI	CASTG	2 cut(s)	377, 610
Vha464I	CTTAAG	1 cut(s)	827
XapI	RAATTY	4 cut(s)	346, 477, 683, 992
XceI	RCATGY	1 cut(s)	1027
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1044
XspI	CTAG	2 cut(s)	165, 389
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.