Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009445.1

Orthogroup ID

OG0003046

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2385

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009445.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggccacagcagctatcaacgttaagccgtcgcctttctgtgttcccaagcctcaaaacccttcaaagcttagggttttcactctccgatgctcctccgccaccgctaatgccgtctcaggcttggtcgaaagaccttggaagacttcagatgctagacttgtgcttgaagatggttcaatatggagagcaaagtcatttggtgcttcaggaacccaagttggtgaagttgtattcaatacatccttgaccgggtatcaagaaattattacagacccgagttatgctggccaatttgtcctgatgacaaacccccaaattggaaatactggtgtaaattttgacgatgaagaatcaaggcagtgcttccttggtggtctagtgatcagaagtttaagtatcagtacttcaaattatagatgttcagaaactcttggtgattatttagcaaaaagaaatatcatgggaatttatgatgttgacacgcgggctatcacccgtagattaaggcaagatggaagccttattggtgttttgagcacagaagagaccaaaacagatgaggaactattggaaatgtctcgttcatgggacattgttggggttgatttaataagtggtgtgtcatgcaagacccctcatgagtgggttgataaaaccaattctgagtgggaatttatgtccaatagaaaagataaagaggcttttcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_sm_chain GATase

Protein Analysis

237

Amino Acids

26.28

Weight (kDa)

5.36

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27740
fragaria_vesca	FvH4_3g43670 FvH4_3g43670 FvH4_5g29030 FvH4_5g29030 FvH4_5g29030
malus_domestica	MD03G1020600.v1.1 MD11G1021800.v1.1 MD15G1342500.v1.1
prunus_persica	Prupe.6G016000_v2.0.a1 Prupe.6G016000_v2.0.a1 Prupe.6G163300_v2.0.a1
pyrus_communis	pycom03g01750 pycom11g01770
rosa_chinensis	RchiOBHm_Chr2g0150151 RchiOBHm_Chr5g0078331
rosa_laevigata	RLG00000020471 RLG00000036765 RLG00000036767
rosa_multiflora	Rmu_sc0000631.1_g000032 Rmu_sc0009445.1_g000001 Rmu_ssc0000020.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003910 Rroxscaffold_1G00003930 Rroxscaffold_2G00097400
rosa_rugosa	Rorug02G0419400 Rorug05G0460000
rosa_samantha	Rh2AG478200 Rh2CG464400 Rh2DG499600 Rh5AG513900 Rh5AG514000 Rh5BG536900 Rh5DG548500
rosa_wichuraiana	Rw2G039040 Rw5G047700 Rw5G047720 Rw5G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	487
AciI	CCGC	3 cut(s)	99, 105, 487
AclI	AACGTT	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	3, 289
AcsI	RAATTY	3 cut(s)	337, 468, 674
AcuI	CTGAAG	2 cut(s)	132, 192
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	252, 320
AgsI	TTSAA	5 cut(s)	66, 170, 180, 238, 411
AluBI	AGCT	2 cut(s)	14, 70
AluI	AGCT	2 cut(s)	14, 70
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	3 cut(s)	121, 542, 585
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	3, 289
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	3 cut(s)	337, 468, 674
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	236, 449, 487
AvaI	CYCGRG	1 cut(s)	277
BalI	TGGCCA	2 cut(s)	5, 291
BarI	GAAGNNNNNNTAC	2 cut(s)	391, 423
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	167, 509
BceAI	ACGGC	2 cut(s)	13, 98
BclI	TGATCA	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	3 cut(s)	121, 542, 585
BfaI	CTAG	2 cut(s)	156, 380
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	253
BmsI	GCATC	2 cut(s)	80, 142
BpiI	GAAGAC	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	137, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 320
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	137, 370
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	2 cut(s)	252, 320
BseMII	CTCAG	2 cut(s)	132, 657
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	2 cut(s)	5, 291
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	2 cut(s)	252, 320
BsmAI	GTCTC	3 cut(s)	121, 542, 585
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	2 cut(s)	5, 291
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	1 cut(s)	384
BspACI	CCGC	3 cut(s)	99, 105, 487
BspANI	GGCC	2 cut(s)	5, 291
BspCNI	CTCAG	2 cut(s)	131, 658
BspFNI	CGCG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	214
BspTNI	GGTCTC	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	137, 370
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	137, 370
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	289, 489
BstDEI	CTNAG	3 cut(s)	71, 118, 666
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	487
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	3 cut(s)	121, 542, 585
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	251
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	5, 291
BtsCI	GGATG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	368
Cac8I	GCNNGC	2 cut(s)	289, 489
CciI	TCATGA	1 cut(s)	640
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	4 cut(s)	463, 588, 627, 641
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	3 cut(s)	71, 118, 666
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
EaeI	YGGCCR	2 cut(s)	3, 289
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	137, 370
Eco31I	GGTCTC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	132, 192
Eco88I	CYCGRG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	137, 370
ErhI	CCWWGG	2 cut(s)	137, 370
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	466, 591, 630, 644
FaiI	YATR	9 cut(s)	184, 285, 417, 464, 474, 589, 628, 642, 680
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	4 cut(s)	462, 587, 626, 640
FauI	CCCGC	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	156, 380
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	5, 291
HapII	CCGG	1 cut(s)	252
Hin1II	CATG	4 cut(s)	466, 591, 630, 644
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	3 cut(s)	236, 449, 487
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	5 cut(s)	89, 151, 389, 427, 667
Hpy188III	TCNNGA	4 cut(s)	210, 260, 301, 641
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	71, 118, 666
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	466, 591, 630, 644
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	105, 195, 265, 273, 314, 315
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	2 cut(s)	80, 142
MaeI	CTAG	2 cut(s)	156, 380
MaeII	ACGT	1 cut(s)	21
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	4 cut(s)	154, 182, 362, 557
MhlI	GDGCHC	1 cut(s)	542
MlsI	TGGCCA	2 cut(s)	5, 291
MluCI	AATT	8 cut(s)	264, 293, 318, 337, 412, 468, 661, 674
MluNI	TGGCCA	2 cut(s)	5, 291
MnlI	CCTC	5 cut(s)	63, 106, 556, 648, 694
Mox20I	TGGCCA	2 cut(s)	5, 291
MscI	TGGCCA	2 cut(s)	5, 291
MseI	TTAA	4 cut(s)	24, 395, 506, 611
Msp20I	TGGCCA	2 cut(s)	5, 291
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	4 cut(s)	466, 591, 630, 644
NlaIV	GGNNCC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SaqAI	TTAA	4 cut(s)	24, 395, 506, 611
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	4 cut(s)	16, 24, 72, 139
SfaNI	GCATC	2 cut(s)	80, 142
Sse9I	AATT	8 cut(s)	264, 293, 318, 337, 412, 468, 661, 674
SsiI	CCGC	3 cut(s)	99, 105, 487
SspMI	CTAG	2 cut(s)	156, 380
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	137, 370
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	129
TasI	AATT	8 cut(s)	264, 293, 318, 337, 412, 468, 661, 674
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	4 cut(s)	24, 395, 506, 611
Tru9I	TTAA	4 cut(s)	24, 395, 506, 611
TscAI	CASTG	1 cut(s)	368
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	3 cut(s)	363, 576, 698
TspRI	CASTG	1 cut(s)	368
XapI	RAATTY	3 cut(s)	337, 468, 674
XspI	CTAG	2 cut(s)	156, 380
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.