FvH4_5g29030

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
20143638 .. 20148112
4475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29030.t1

Sequence Viewer

Length: 1284 bp
ATGGCCACAGCAGCTTTCAACTTGGCCCTCCTAAAGCCTTCGGCTTTCTCTGTTCCCAAGCCTCAAAACCCTTCAAAGATTCGGATTTTCACTCTCAGATGCTCATCCGCTCCCACTAATGCCGTCTCAGACCTGTCCAAAAGACCTTGGAAAACTTCAGATGCTAGACTCGTGCTTGAAGATGGTTCAATCTGGAGAGCAAAATCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTATTACAGACCCCAGTTATGCTGGCCAATTTGTCCTGATGACAAACCCTCAAATTGGAAACACTGGTGTAAATTTTGATGATGAAGAATCTATGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACGTCCAATTATAGATCTGCAGAAACTCTTGGTGATTATCTAGCAAAAAGGAATATCATGGGAATTTATGATGTTGACACACGGGCTATCACCCGCAGATTAAGGCAAGATGGAAGCCTTATTGGTGTTTTAAGCACAGAAGAGACAAAAACAGATGAGGAACTATTGGAGATGTCTCGGTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGCGTGTCATGCAAGGCCCCTCATGAGTGGGTTGATAAAACCGATCCTGAGTGGGAATTCAAGCTCAATAGAAAAGATGAAGGGGCTTTTCGTGTTGTTGCATATGATTTTGGTATCAAGAGCAACATACTCAGACGATTGGCTTCCTATGGCTGCAAAATTACTGTGGTGCCTTCAACATGGCCAGCATCGGAGACTCTTAAGATGAAACCAGATGGGGTCCTTTTCAGCAATGGCCCTGGAGACCCATCTGCTGTTCCATATGCTGTTGAAACGGTCAAGGAGATTCTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGCCATCAGTTGCTTGGCTTGGCATTAGGTGGTACAACTTTTAAAATGAAGTTTGGTCACCATGGAGGAAATCATCCGGTCCGTAATCTTCGTACTGGAGAAGTTGAGATAAGCGCTCAGAATCACAACTATGCGGTTGACCCCAAATCACTTCCAGATGGTGTAGAAGTAACTCATGTCAATCTCAACGATGGAAGCTGTGCTGGCATTGCTTATCCTGCACGAAACATTATGTCTATTCAGTACCACCCTGAAGCATCCCCCGGACCTCATGACTCAGATTACGCTTTTAGAGAGTTCATTGAGCTGATGAAGAGAGTGAAAGTAATTGCATGA

Protein Analysis

428

Amino Acids

46.77

Weight (kDa)

6.33

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_sm_chain PF00988 57 - 181 3.3e-47 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase PF00117 243 - 418 7.8e-56 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 796
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 3 cut(s) 108, 508, 1082
AclWI GGATC 1 cut(s) 665
AcoI YGGCCR 3 cut(s) 3, 298, 809
AcsI RAATTY 4 cut(s) 346, 477, 683, 939
AcuI CTGAAG 3 cut(s) 141, 201, 1221
AfaI GTAC 4 cut(s) 415, 982, 1042, 1193
AfeI AGCGCT 1 cut(s) 1063
AfiI CCNNNNNNNGG 3 cut(s) 261, 329, 935
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 8 cut(s) 19, 75, 179, 189, 247, 688, 804, 899
AjnI CCWGG 1 cut(s) 865
AluBI AGCT 4 cut(s) 14, 691, 1146, 1255
AluI AGCT 4 cut(s) 14, 691, 1146, 1255
Alw26I GTCTC 5 cut(s) 130, 551, 594, 815, 864
AlwI GGATC 1 cut(s) 665
Aor51HI AGCGCT 1 cut(s) 1063
AoxI GGCC 7 cut(s) 3, 24, 298, 642, 809, 862, 949
ApeKI GCWGC 2 cut(s) 11, 780
ApoI RAATTY 4 cut(s) 346, 477, 683, 939
AspLEI GCGC 1 cut(s) 1064
AspS9I GGNCC 7 cut(s) 25, 643, 847, 863, 949, 1027, 1214
AsuC2I CCSGG 2 cut(s) 262, 1212
AsuHPI GGTGA 4 cut(s) 245, 458, 496, 998
AvaII GGWCC 3 cut(s) 847, 1027, 1214
BalI TGGCCA 3 cut(s) 5, 300, 811
BanI GGYRCC 1 cut(s) 796
BauI CACGAG 1 cut(s) 170
BbvI GCAGC 2 cut(s) 23, 767
BccI CCATC 7 cut(s) 176, 518, 836, 883, 960, 1100, 1133
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 867
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 262, 1212
BcoDI GTCTC 5 cut(s) 130, 551, 594, 815, 864
BfaI CTAG 3 cut(s) 165, 389, 455
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 1065
BfrI CTTAAG 1 cut(s) 827
BglII AGATCT 1 cut(s) 428
BisI GCNGC 2 cut(s) 12, 781
BlsI GCNGC 2 cut(s) 13, 782
Bme1390I CCNGG 3 cut(s) 262, 867, 1212
Bme18I GGWCC 3 cut(s) 847, 1027, 1214
BmgT120I GGNCC 7 cut(s) 25, 643, 847, 863, 949, 1027, 1214
BmiI GGNNCC 5 cut(s) 223, 645, 798, 848, 927
BmrFI CCNGG 3 cut(s) 262, 867, 1212
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 4 cut(s) 89, 151, 824, 1214
BmuI ACTGGG 1 cut(s) 282
BpmI CTGGAG 3 cut(s) 214, 888, 1065
BpuMI CCSGG 2 cut(s) 262, 1212
BsaBI GATNNNNATC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BsaWI WCCGGW 1 cut(s) 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 329, 935
Bse1I ACTGG 3 cut(s) 288, 343, 1048
Bse3DI GCAATG 2 cut(s) 865, 1155
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 1 cut(s) 867
BseDI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BseGI GGATG 4 cut(s) 104, 251, 1021, 1205
BseJI GATNNNNATC 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BseMI GCAATG 2 cut(s) 865, 1155
BseMII CTCAG 6 cut(s) 109, 141, 666, 772, 1079, 1239
BseNI ACTGG 3 cut(s) 288, 343, 1048
BseXI GCAGC 2 cut(s) 23, 767
BsgI GTGCAG 1 cut(s) 1152
BshFI GGCC 7 cut(s) 5, 26, 300, 644, 811, 864, 951
BshNI GGYRCC 1 cut(s) 796
BsiSI CCGG 3 cut(s) 261, 1025, 1212
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BsmAI GTCTC 5 cut(s) 130, 551, 594, 815, 864
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 7 cut(s) 5, 26, 300, 644, 811, 864, 951
Bso31I GGTCTC 1 cut(s) 864
Bsp143I GATC 3 cut(s) 393, 428, 670
Bsp19I CCATGG 1 cut(s) 1009
BspACI CCGC 3 cut(s) 108, 508, 1082
BspANI GGCC 7 cut(s) 5, 26, 300, 644, 811, 864, 951
BspCNI CTCAG 6 cut(s) 108, 140, 667, 771, 1078, 1238
BspHI TCATGA 2 cut(s) 649, 1219
BspLI GGNNCC 5 cut(s) 223, 645, 798, 848, 927
BspMAI CTGCAG 1 cut(s) 436
BspPI GGATC 1 cut(s) 665
BspT107I GGYRCC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 864
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 2 cut(s) 865, 1155
BsrI ACTGG 3 cut(s) 288, 343, 1048
BssECI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BssMI GATC 3 cut(s) 393, 428, 670
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 3 cut(s) 146, 379, 1009
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 867
Bst4CI ACNGT 2 cut(s) 793, 904
Bst6I CTCTTC 2 cut(s) 549, 1256
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 298, 813, 1153
BstDEI CTNAG 6 cut(s) 95, 127, 675, 758, 1065, 1225
BstDSI CCRYGG 1 cut(s) 1009
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 4 cut(s) 104, 251, 1021, 1205
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 1 cut(s) 1064
BstKTI GATC 3 cut(s) 396, 431, 673
BstMAI GTCTC 5 cut(s) 130, 551, 594, 815, 864
BstMBI GATC 3 cut(s) 393, 428, 670
BstMWI GCNNNNNNNGC 5 cut(s) 11, 636, 1152, 1157, 1166
BstNI CCWGG 1 cut(s) 867
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 3 cut(s) 260, 865, 1210
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 23, 767
BstX2I RGATCY 1 cut(s) 428
BstYI RGATCY 1 cut(s) 428
BsuRI GGCC 7 cut(s) 5, 26, 300, 644, 811, 864, 951
BtgI CCRYGG 1 cut(s) 1009
BtsCI GGATG 4 cut(s) 104, 251, 1021, 1205
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 336, 377
Cac8I GCNNGC 3 cut(s) 298, 813, 1153
CciI TCATGA 2 cut(s) 649, 1219
CfoI GCGC 1 cut(s) 1064
Cfr13I GGNCC 7 cut(s) 25, 643, 847, 863, 949, 1027, 1214
CpoI CGGWCCG 1 cut(s) 1027
Csp6I GTAC 4 cut(s) 414, 981, 1041, 1192
CspI CGGWCCG 1 cut(s) 1027
CviQI GTAC 4 cut(s) 414, 981, 1041, 1192
DdeI CTNAG 6 cut(s) 95, 127, 675, 758, 1065, 1225
DpnI GATC 3 cut(s) 395, 430, 672
DpnII GATC 3 cut(s) 393, 428, 670
DraI TTTAAA 1 cut(s) 991
EaeI YGGCCR 3 cut(s) 3, 298, 809
Eam1104I CTCTTC 2 cut(s) 549, 1256
EarI CTCTTC 2 cut(s) 549, 1256
Eco130I CCWWGG 3 cut(s) 146, 379, 1009
Eco31I GGTCTC 1 cut(s) 864
Eco47I GGWCC 3 cut(s) 847, 1027, 1214
Eco47III AGCGCT 1 cut(s) 1063
Eco57I CTGAAG 3 cut(s) 141, 201, 1221
Eco91I GGTNACC 1 cut(s) 1004
EcoO109I RGGNCCY 2 cut(s) 643, 847
EcoO65I GGTNACC 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 865
EcoT14I CCWWGG 3 cut(s) 146, 379, 1009
ErhI CCWWGG 3 cut(s) 146, 379, 1009
Esp3I CGTCTC 1 cut(s) 130
FaqI GGGAC 1 cut(s) 614
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 2 cut(s) 730, 889
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 12, 781
FokI GGATG 4 cut(s) 91, 238, 1008, 1192
Fsp4HI GCNGC 2 cut(s) 12, 781
FspBI CTAG 3 cut(s) 165, 389, 455
GlaI GCGC 1 cut(s) 1063
GluI GCNGC 2 cut(s) 12, 781
GsuI CTGGAG 3 cut(s) 214, 888, 1065
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 7 cut(s) 5, 26, 300, 644, 811, 864, 951
HapII CCGG 3 cut(s) 261, 1025, 1212
HhaI GCGC 1 cut(s) 1064
Hin6I GCGC 1 cut(s) 1062
HinP1I GCGC 1 cut(s) 1062
HincII GTYRAC 2 cut(s) 490, 1087
HindII GTYRAC 2 cut(s) 490, 1087
HinfI GANTC 7 cut(s) 79, 168, 362, 823, 913, 1069, 1223
HpaII CCGG 3 cut(s) 261, 1025, 1212
HphI GGTGA 4 cut(s) 245, 458, 496, 998
Hpy166II GTNNAC 2 cut(s) 490, 1087
Hpy188I TCNGA 9 cut(s) 84, 98, 130, 160, 398, 761, 820, 1068, 1228
Hpy188III TCNNGA 9 cut(s) 193, 219, 269, 310, 650, 674, 745, 1103, 1220
Hpy8I GTNNAC 2 cut(s) 490, 1087
HpyAV CCTTC 4 cut(s) 48, 81, 701, 810
HpyCH4III ACNGT 2 cut(s) 793, 904
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 8 cut(s) 370, 434, 639, 728, 783, 945, 1169, 1280
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 636, 1152, 1157, 1166
HpyF3I CTNAG 6 cut(s) 95, 127, 675, 758, 1065, 1225
HpySE526I ACGT 1 cut(s) 416
HspAI GCGC 1 cut(s) 1062
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 3 cut(s) 393, 428, 670
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 2 cut(s) 23, 767
LweI GCATC 4 cut(s) 89, 151, 824, 1214
MaeI CTAG 3 cut(s) 165, 389, 455
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 1004, 1117
MalI GATC 3 cut(s) 395, 430, 672
MbiI CCGCTC 1 cut(s) 110
MboI GATC 3 cut(s) 393, 428, 670
MboII GAAGA 5 cut(s) 191, 371, 566, 1028, 1273
MflI RGATCY 1 cut(s) 428
MlsI TGGCCA 3 cut(s) 5, 300, 811
MluNI TGGCCA 3 cut(s) 5, 300, 811
MlyI GAGTC 3 cut(s) 162, 817, 1217
MnlI CCTC 7 cut(s) 38, 72, 333, 565, 657, 1007, 1227
Mox20I TGGCCA 3 cut(s) 5, 300, 811
MscI TGGCCA 3 cut(s) 5, 300, 811
MseI TTAA 6 cut(s) 404, 515, 545, 620, 828, 990
MslI CAYNNNNRTG 1 cut(s) 1077
Msp20I TGGCCA 3 cut(s) 5, 300, 811
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 3 cut(s) 261, 1025, 1212
MspR9I CCNGG 3 cut(s) 262, 867, 1212
MvaI CCWGG 1 cut(s) 867
MwoI GCNNNNNNNGC 5 cut(s) 11, 636, 1152, 1157, 1166
NciI CCSGG 2 cut(s) 262, 1212
NcoI CCATGG 1 cut(s) 1009
NdeI CATATG 2 cut(s) 730, 889
NdeII GATC 3 cut(s) 393, 428, 670
NlaIV GGNNCC 5 cut(s) 223, 645, 798, 848, 927
NmuCI GTSAC 1 cut(s) 1004
PagI TCATGA 2 cut(s) 649, 1219
PfeI GAWTC 4 cut(s) 79, 362, 913, 1069
PkrI GCNGC 2 cut(s) 13, 782
PleI GAGTC 3 cut(s) 162, 817, 1217
PpsI GAGTC 3 cut(s) 162, 817, 1217
PpuMI RGGWCCY 1 cut(s) 847
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 1 cut(s) 865
PspEI GGTNACC 1 cut(s) 1004
PspGI CCWGG 1 cut(s) 865
PspN4I GGNNCC 5 cut(s) 223, 645, 798, 848, 927
PspPI GGNCC 7 cut(s) 25, 643, 847, 863, 949, 1027, 1214
PspPPI RGGWCCY 1 cut(s) 847
PstI CTGCAG 1 cut(s) 436
PsuI RGATCY 1 cut(s) 428
RsaI GTAC 4 cut(s) 415, 982, 1042, 1193
RsaNI GTAC 4 cut(s) 414, 981, 1041, 1192
RseI CAYNNNNRTG 1 cut(s) 1077
Rsr2I CGGWCCG 1 cut(s) 1027
RsrII CGGWCCG 1 cut(s) 1027
SaqAI TTAA 6 cut(s) 404, 515, 545, 620, 828, 990
SatI GCNGC 2 cut(s) 12, 781
Sau3AI GATC 3 cut(s) 393, 428, 670
Sau96I GGNCC 7 cut(s) 25, 643, 847, 863, 949, 1027, 1214
SchI GAGTC 3 cut(s) 162, 817, 1217
ScrFI CCNGG 3 cut(s) 262, 867, 1212
SfaNI GCATC 4 cut(s) 89, 151, 824, 1214
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 3 cut(s) 847, 1027, 1214
SmiMI CAYNNNNRTG 1 cut(s) 1077
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SsiI CCGC 3 cut(s) 108, 508, 1082
SspMI CTAG 3 cut(s) 165, 389, 455
StyD4I CCNGG 3 cut(s) 260, 865, 1210
StyI CCWWGG 3 cut(s) 146, 379, 1009
TaaI ACNGT 2 cut(s) 793, 904
TaiI ACGT 1 cut(s) 419
TaqII GACCGA 1 cut(s) 582
TfiI GAWTC 4 cut(s) 79, 362, 913, 1069
Tru1I TTAA 6 cut(s) 404, 515, 545, 620, 828, 990
Tru9I TTAA 6 cut(s) 404, 515, 545, 620, 828, 990
TscAI CASTG 2 cut(s) 343, 377
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 2 cut(s) 11, 780
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 6 cut(s) 372, 720, 848, 1010, 1237, 1274
TspGWI ACGGA 1 cut(s) 1019
TspRI CASTG 2 cut(s) 343, 377
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 3 cut(s) 847, 1027, 1214
XapI RAATTY 4 cut(s) 346, 477, 683, 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 959
XspI CTAG 3 cut(s) 165, 389, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.