FvH4_3g43670

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
36381812 .. 36385732
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43670.t1

Sequence Viewer

Length: 1284 bp
ATGGCCACAGCAGCTATCAACTTGGGCCTTGTAAAGCCTTCACCTTTCACTGTTCCCAAGTCTCAAAACCCTTCAAAGCTTAGGGTTTTCACTCTACGGTGCTCCTCCGCCACCGCTAATGCCGTCTCCGACTTGTCGGAAAGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATCTGGAAAGCAAAGTCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTATTACAGACCCAAGTTATGCTGGCCAATTTGTGCTGATGACGAACCCCCAAATTGGAAATACTGGAGTGAATTTTGATGATGAAGAATCAAGGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATTATAGATGTGCAGAAACTCTTGGTGATTATTTAGCAGCAAGGAACATCATGGGAATTTATGATGTTGACACACGAGCTATCACCCGCAGATTAAGACAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAGAGACAAAAACAGATGAGGAACTATTGGAAATGTCTCGATCATGGGACATTGTTGGGGTTGACTTAATAAGTGGTGTTTCATGCAAGACCCCTTATGAATGGGTTGATAAAACCGATTCTGAATGGGAATTTAAGTCCAATAGAAATGATGGAGAGGCTTTTCGTGTTGTTGCATATGATTTTGGAATCAAGAGCAACATACTTAGGCGATTGGCTTCCTATGGTTGCAAAATTACTGTGGTGCCTTCAACATGGCCAGCATCAGAGACTCTTAAGATGAAACCAGATGGGGTCCTTTTCAGCAATGGCCCTGGAGACCCATCCGCTGTTCCATATGCTGTTGAAACGGTCAAGGAGATTCTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGCCATCAGTTGATTGGCTTGGCGTTAGGCGGTACAACTTTTAAAATGAAGTTTGGTCACCACGGAGGAAATCATCCGGTCTGTAATCTTCGTACTGGACATGTTGAGATAAGCGCTCAGAATCACAACTATGCAGTTGACCCCAAATCACTTCCAGATGGTGTAGAAGTAACTCATGTCAATCTGAACGATAAAAGCTGTGCTGGCCTTGCTTACCCTGCACGAAAAATAATGTCTATTCAGTACCACCCTGAAGCATCCCCAGGACCTCATGACTCGGATTATGCTTTTAGAGAATTCATTGAGCTGATGAAGAGAGTGAAGGTAAATGCATGA

Protein Analysis

428

Amino Acids

46.7

Weight (kDa)

6.17

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_sm_chain PF00988 57 - 181 4.6e-47 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase PF00117 243 - 418 2.6e-55 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 796
AciI CCGC 5 cut(s) 108, 114, 508, 879, 978
AcoI YGGCCR 3 cut(s) 3, 298, 809
AcsI RAATTY 5 cut(s) 346, 477, 683, 939, 1244
AcuI CTGAAG 3 cut(s) 141, 201, 1221
AfaI GTAC 4 cut(s) 415, 982, 1042, 1193
AfeI AGCGCT 1 cut(s) 1063
AfiI CCNNNNNNNGG 3 cut(s) 261, 329, 935
AflII CTTAAG 1 cut(s) 827
AflIII ACRYGT 1 cut(s) 1048
AgsI TTSAA 7 cut(s) 75, 179, 189, 247, 420, 804, 899
AjnI CCWGG 2 cut(s) 865, 1210
AluBI AGCT 5 cut(s) 14, 79, 500, 1146, 1255
AluI AGCT 5 cut(s) 14, 79, 500, 1146, 1255
Alw21I GWGCWC 2 cut(s) 104, 551
Alw26I GTCTC 6 cut(s) 66, 130, 551, 594, 815, 864
Aor51HI AGCGCT 1 cut(s) 1063
AoxI GGCC 7 cut(s) 3, 25, 298, 809, 862, 949, 1153
ApeKI GCWGC 2 cut(s) 11, 458
ApoI RAATTY 5 cut(s) 346, 477, 683, 939, 1244
AspLEI GCGC 1 cut(s) 1064
AspS9I GGNCC 5 cut(s) 25, 847, 863, 949, 1214
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 5 cut(s) 33, 245, 458, 496, 998
AvaII GGWCC 2 cut(s) 847, 1214
BalI TGGCCA 3 cut(s) 5, 300, 811
BanI GGYRCC 1 cut(s) 796
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 2 cut(s) 104, 551
BbvI GCAGC 2 cut(s) 23, 470
BccI CCATC 7 cut(s) 176, 518, 698, 836, 883, 960, 1100
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 867, 1212
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 6 cut(s) 66, 130, 551, 594, 815, 864
BfaI CTAG 2 cut(s) 165, 389
BfoI RGCGCY 1 cut(s) 1065
BfrI CTTAAG 1 cut(s) 827
BisI GCNGC 2 cut(s) 12, 459
BlsI GCNGC 2 cut(s) 13, 460
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 3 cut(s) 262, 867, 1212
Bme18I GGWCC 2 cut(s) 847, 1214
BmgT120I GGNCC 5 cut(s) 25, 847, 863, 949, 1214
BmiI GGNNCC 4 cut(s) 223, 798, 848, 927
BmrFI CCNGG 3 cut(s) 262, 867, 1212
BmsI GCATC 3 cut(s) 151, 824, 1214
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 2 cut(s) 360, 888
Bpu10I CCTNAGC 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BsaWI WCCGGW 1 cut(s) 1024
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 329, 935
Bse1I ACTGG 2 cut(s) 343, 1048
Bse3DI GCAATG 1 cut(s) 865
BseBI CCWGG 2 cut(s) 867, 1212
BseDI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BseGI GGATG 4 cut(s) 251, 875, 1021, 1205
BseLI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 1 cut(s) 1079
BseNI ACTGG 2 cut(s) 343, 1048
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 23, 470
BsgI GTGCAG 2 cut(s) 453, 1152
BshFI GGCC 7 cut(s) 5, 27, 300, 811, 864, 951, 1155
BshNI GGYRCC 1 cut(s) 796
BsiHKAI GWGCWC 2 cut(s) 104, 551
BsiSI CCGG 2 cut(s) 261, 1025
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BsmAI GTCTC 6 cut(s) 66, 130, 551, 594, 815, 864
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 7 cut(s) 5, 27, 300, 811, 864, 951, 1155
Bso31I GGTCTC 1 cut(s) 864
Bsp1286I GDGCHC 2 cut(s) 104, 551
Bsp143I GATC 2 cut(s) 393, 593
BspACI CCGC 5 cut(s) 108, 114, 508, 879, 978
BspANI GGCC 7 cut(s) 5, 27, 300, 811, 864, 951, 1155
BspCNI CTCAG 1 cut(s) 1078
BspHI TCATGA 1 cut(s) 1219
BspLI GGNNCC 4 cut(s) 223, 798, 848, 927
BspT107I GGYRCC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 864
BsrDI GCAATG 1 cut(s) 865
BsrI ACTGG 2 cut(s) 343, 1048
BssECI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BssMI GATC 2 cut(s) 393, 593
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 146, 379
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 867, 1212
Bst4CI ACNGT 4 cut(s) 52, 99, 793, 904
Bst6I CTCTTC 2 cut(s) 549, 1256
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 298, 813, 1153
BstDEI CTNAG 3 cut(s) 80, 758, 1065
BstDSI CCRYGG 1 cut(s) 1009
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 4 cut(s) 251, 875, 1021, 1205
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 1 cut(s) 1064
BstKTI GATC 2 cut(s) 396, 596
BstMAI GTCTC 6 cut(s) 66, 130, 551, 594, 815, 864
BstMBI GATC 2 cut(s) 393, 593
BstMWI GCNNNNNNNGC 4 cut(s) 11, 1152, 1157, 1166
BstNI CCWGG 2 cut(s) 867, 1212
BstNSI RCATGY 1 cut(s) 1052
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 3 cut(s) 260, 865, 1210
BstV1I GCAGC 2 cut(s) 23, 470
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 7 cut(s) 5, 27, 300, 811, 864, 951, 1155
BtgI CCRYGG 1 cut(s) 1009
BtsCI GGATG 4 cut(s) 251, 875, 1021, 1205
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 48, 377
Cac8I GCNNGC 3 cut(s) 298, 813, 1153
CciI TCATGA 1 cut(s) 1219
CfoI GCGC 1 cut(s) 1064
Cfr13I GGNCC 5 cut(s) 25, 847, 863, 949, 1214
Csp6I GTAC 4 cut(s) 414, 981, 1041, 1192
CviAII CATG 9 cut(s) 472, 597, 636, 807, 946, 1049, 1124, 1220, 1281
CviQI GTAC 4 cut(s) 414, 981, 1041, 1192
DdeI CTNAG 3 cut(s) 80, 758, 1065
DpnI GATC 2 cut(s) 395, 595
DpnII GATC 2 cut(s) 393, 593
DraI TTTAAA 1 cut(s) 991
EaeI YGGCCR 3 cut(s) 3, 298, 809
Eam1104I CTCTTC 2 cut(s) 549, 1256
EarI CTCTTC 2 cut(s) 549, 1256
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 146, 379
Eco31I GGTCTC 1 cut(s) 864
Eco47I GGWCC 2 cut(s) 847, 1214
Eco47III AGCGCT 1 cut(s) 1063
Eco57I CTGAAG 3 cut(s) 141, 201, 1221
Eco91I GGTNACC 1 cut(s) 1004
EcoO109I RGGNCCY 2 cut(s) 847, 1214
EcoO65I GGTNACC 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 1244
EcoRII CCWGG 2 cut(s) 865, 1210
EcoT14I CCWWGG 2 cut(s) 146, 379
EcoT22I ATGCAT 1 cut(s) 1282
ErhI CCWWGG 2 cut(s) 146, 379
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 9 cut(s) 475, 600, 639, 810, 949, 1052, 1127, 1223, 1284
FaqI GGGAC 1 cut(s) 614
FatI CATG 9 cut(s) 471, 596, 635, 806, 945, 1048, 1123, 1219, 1280
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 2 cut(s) 730, 889
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 12, 459
FokI GGATG 4 cut(s) 238, 862, 1008, 1192
Fsp4HI GCNGC 2 cut(s) 12, 459
FspBI CTAG 2 cut(s) 165, 389
GlaI GCGC 1 cut(s) 1063
GluI GCNGC 2 cut(s) 12, 459
GsuI CTGGAG 2 cut(s) 360, 888
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 7 cut(s) 5, 27, 300, 811, 864, 951, 1155
HapII CCGG 2 cut(s) 261, 1025
HhaI GCGC 1 cut(s) 1064
Hin1II CATG 9 cut(s) 475, 600, 639, 810, 949, 1052, 1127, 1223, 1284
Hin6I GCGC 1 cut(s) 1062
HinP1I GCGC 1 cut(s) 1062
HincII GTYRAC 3 cut(s) 490, 616, 1087
HindII GTYRAC 3 cut(s) 490, 616, 1087
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 7 cut(s) 362, 671, 741, 823, 913, 1069, 1223
HpaII CCGG 2 cut(s) 261, 1025
HphI GGTGA 5 cut(s) 33, 245, 458, 496, 998
Hpy166II GTNNAC 3 cut(s) 490, 616, 1087
Hpy188I TCNGA 9 cut(s) 130, 139, 160, 398, 676, 820, 1068, 1134, 1228
Hpy188III TCNNGA 7 cut(s) 193, 219, 269, 591, 745, 1103, 1220
Hpy8I GTNNAC 3 cut(s) 490, 616, 1087
HpyAV CCTTC 4 cut(s) 48, 81, 810, 1264
HpyCH4III ACNGT 4 cut(s) 52, 99, 793, 904
HpyCH4V TGCA 8 cut(s) 434, 639, 728, 783, 945, 1082, 1169, 1280
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 1152, 1157, 1166
HpyF3I CTNAG 3 cut(s) 80, 758, 1065
Hsp92II CATG 9 cut(s) 475, 600, 639, 810, 949, 1052, 1127, 1223, 1284
HspAI GCGC 1 cut(s) 1062
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 393, 593
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 2 cut(s) 23, 470
LweI GCATC 3 cut(s) 151, 824, 1214
MaeI CTAG 2 cut(s) 165, 389
MaeIII GTNAC 2 cut(s) 1004, 1117
MalI GATC 2 cut(s) 395, 595
MboI GATC 2 cut(s) 393, 593
MboII GAAGA 6 cut(s) 163, 191, 371, 566, 1028, 1273
MhlI GDGCHC 2 cut(s) 104, 551
MlsI TGGCCA 3 cut(s) 5, 300, 811
MluNI TGGCCA 3 cut(s) 5, 300, 811
MlyI GAGTC 2 cut(s) 817, 1217
MmeI TCCRAC 2 cut(s) 117, 153
MnlI CCTC 5 cut(s) 115, 565, 703, 1007, 1227
Mox20I TGGCCA 3 cut(s) 5, 300, 811
Mph1103I ATGCAT 1 cut(s) 1282
MscI TGGCCA 3 cut(s) 5, 300, 811
MseI TTAA 6 cut(s) 404, 515, 620, 687, 828, 990
MslI CAYNNNNRTG 1 cut(s) 1077
Msp20I TGGCCA 3 cut(s) 5, 300, 811
MspA1I CMGCKG 1 cut(s) 881
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 2 cut(s) 261, 1025
MspR9I CCNGG 3 cut(s) 262, 867, 1212
MvaI CCWGG 2 cut(s) 867, 1212
MwoI GCNNNNNNNGC 4 cut(s) 11, 1152, 1157, 1166
NciI CCSGG 1 cut(s) 262
NdeI CATATG 2 cut(s) 730, 889
NdeII GATC 2 cut(s) 393, 593
NlaIII CATG 9 cut(s) 475, 600, 639, 810, 949, 1052, 1127, 1223, 1284
NlaIV GGNNCC 4 cut(s) 223, 798, 848, 927
NmuCI GTSAC 1 cut(s) 1004
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 1 cut(s) 1052
PagI TCATGA 1 cut(s) 1219
PciI ACATGT 1 cut(s) 1048
PfeI GAWTC 5 cut(s) 362, 671, 741, 913, 1069
PkrI GCNGC 2 cut(s) 13, 460
PleI GAGTC 2 cut(s) 817, 1217
PpsI GAGTC 2 cut(s) 817, 1217
PpuMI RGGWCCY 2 cut(s) 847, 1214
PscI ACATGT 1 cut(s) 1048
Psp5II RGGWCCY 2 cut(s) 847, 1214
Psp6I CCWGG 2 cut(s) 865, 1210
PspEI GGTNACC 1 cut(s) 1004
PspGI CCWGG 2 cut(s) 865, 1210
PspN4I GGNNCC 4 cut(s) 223, 798, 848, 927
PspPI GGNCC 5 cut(s) 25, 847, 863, 949, 1214
PspPPI RGGWCCY 2 cut(s) 847, 1214
RsaI GTAC 4 cut(s) 415, 982, 1042, 1193
RsaNI GTAC 4 cut(s) 414, 981, 1041, 1192
RseI CAYNNNNRTG 1 cut(s) 1077
SaqAI TTAA 6 cut(s) 404, 515, 620, 687, 828, 990
SatI GCNGC 2 cut(s) 12, 459
Sau3AI GATC 2 cut(s) 393, 593
Sau96I GGNCC 5 cut(s) 25, 847, 863, 949, 1214
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 2 cut(s) 817, 1217
ScrFI CCNGG 3 cut(s) 262, 867, 1212
SduI GDGCHC 2 cut(s) 104, 551
SfaNI GCATC 3 cut(s) 151, 824, 1214
SinI GGWCC 2 cut(s) 847, 1214
SmiMI CAYNNNNRTG 1 cut(s) 1077
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SsiI CCGC 5 cut(s) 108, 114, 508, 879, 978
SspMI CTAG 2 cut(s) 165, 389
StyD4I CCNGG 3 cut(s) 260, 865, 1210
StyI CCWWGG 2 cut(s) 146, 379
TaaI ACNGT 4 cut(s) 52, 99, 793, 904
TaqI TCGA 1 cut(s) 592
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 5 cut(s) 362, 671, 741, 913, 1069
Tru1I TTAA 6 cut(s) 404, 515, 620, 687, 828, 990
Tru9I TTAA 6 cut(s) 404, 515, 620, 687, 828, 990
TscAI CASTG 2 cut(s) 55, 377
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 2 cut(s) 11, 458
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 7 cut(s) 372, 624, 666, 848, 1010, 1237, 1274
TspGWI ACGGA 1 cut(s) 1026
TspRI CASTG 2 cut(s) 55, 377
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 847, 1214
XapI RAATTY 5 cut(s) 346, 477, 683, 939, 1244
XceI RCATGY 1 cut(s) 1052
XcmI CCANNNNNNNNNTGG 1 cut(s) 959
XspI CTAG 2 cut(s) 165, 389
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.