Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003046

Physical Location & Seq

Genomic Coordinates Forward (+)

82695991 .. 82699590

Gene Structure 3600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G047700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCCACAGCAGCTATCAACTTATTCCTCGTAAAGCCGTCGCCTTTCTCTGTTCCCAAGCCTCAAAACCCTTCAAAGCTTAGGGTTTTCACTCTCCGATGCTCCTCCGCCACCGCCAACGCCGTCTCAGACTTGTCCGAAAGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATATGGAGAGCAAAGTCATTTGGTGCTTCAGGAACTCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTATTACAGACCCGATTTATGCTGACCAATTTGTCCTGATGACAAACCCCCAAATTGGAAATACTGTTGTAAATTTTGATGATGAAGAATCAAGGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATTATAGATGTGCAGAAACTCTTGGTGATTATTTAGCAAACAGGAATATCATGGGAATTTATGATGTTGACACACAGGCTATCTCCCGCAGATCAAGGCAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAGAGACCAAAACAGATGAGGAACTATTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGCGTGTCATGCAAGACCCCTCATGAGTGGGTTGATAAAACCAATTCTGAGTGGGAATTTATGTCCAAAAGAAAAGATGGAGAGGCTTTTCGTATAATCCAAGAGAAGAAGATTATTAGTGAAATCAGTGACTGTCATATTCTTGGAAATGTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_sm_chain GATase

Protein Analysis

261

Amino Acids

28.99

Weight (kDa)

4.96

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_sm_chain	PF00988	57 - 181	3.8e-41	Carbamoyl-phosphate synthase small chain, CPSase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27740
fragaria_vesca	FvH4_3g43670 FvH4_3g43670 FvH4_5g29030 FvH4_5g29030 FvH4_5g29030
malus_domestica	MD03G1020600.v1.1 MD11G1021800.v1.1 MD15G1342500.v1.1
prunus_persica	Prupe.6G016000_v2.0.a1 Prupe.6G016000_v2.0.a1 Prupe.6G163300_v2.0.a1
pyrus_communis	pycom03g01750 pycom11g01770
rosa_chinensis	RchiOBHm_Chr2g0150151 RchiOBHm_Chr5g0078331
rosa_laevigata	RLG00000020471 RLG00000036765 RLG00000036767
rosa_multiflora	Rmu_sc0000631.1_g000032 Rmu_sc0009445.1_g000001 Rmu_ssc0000020.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003910 Rroxscaffold_1G00003930 Rroxscaffold_2G00097400
rosa_rugosa	Rorug02G0419400 Rorug05G0460000
rosa_samantha	Rh2AG478200 Rh2CG464400 Rh2DG499600 Rh5AG513900 Rh5AG514000 Rh5BG536900 Rh5DG548500
rosa_wichuraiana	Rw2G039040 Rw5G047700 Rw5G047720 Rw5G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AciI	CCGC	3 cut(s)	108, 114, 508
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	346, 477, 683
AcuI	CTGAAG	2 cut(s)	141, 201
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	261, 329
AgsI	TTSAA	5 cut(s)	75, 179, 189, 247, 420
AluBI	AGCT	2 cut(s)	14, 79
AluI	AGCT	2 cut(s)	14, 79
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	3 cut(s)	130, 551, 594
AlwNI	CAGNNNCTG	1 cut(s)	759
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	3 cut(s)	346, 477, 683
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	245, 458
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BauI	CACGAG	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	3 cut(s)	176, 518, 698
BceAI	ACGGC	2 cut(s)	22, 107
BclI	TGATCA	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	3 cut(s)	130, 551, 594
BfaI	CTAG	2 cut(s)	165, 389
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	89, 151
BpiI	GAAGAC	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	146, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 329
BseDI	CCNNGG	2 cut(s)	146, 379
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	261, 329
BseMII	CTCAG	2 cut(s)	141, 666
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	2 cut(s)	261, 329
BsmAI	GTCTC	3 cut(s)	130, 551, 594
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	2 cut(s)	393, 512
BspACI	CCGC	3 cut(s)	108, 114, 508
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	140, 667
BspHI	TCATGA	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	146, 379
BssMI	GATC	2 cut(s)	393, 512
BssSI	CACGAG	1 cut(s)	781
BssT1I	CCWWGG	2 cut(s)	146, 379
Bst2BI	CACGAG	1 cut(s)	781
Bst4CI	ACNGT	2 cut(s)	340, 761
Bst6I	CTCTTC	1 cut(s)	549
BstDEI	CTNAG	3 cut(s)	80, 127, 675
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	396, 515
BstMAI	GTCTC	3 cut(s)	130, 551, 594
BstMBI	GATC	2 cut(s)	393, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 636
BstSCI	CCNGG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	377, 760
CaiI	CAGNNNCTG	1 cut(s)	759
CciI	TCATGA	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	4 cut(s)	472, 597, 636, 650
CviJI	RGCY	8 cut(s)	5, 14, 37, 61, 79, 500, 531, 713
CviKI_1	RGCY	8 cut(s)	5, 14, 37, 61, 79, 500, 531, 713
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	80, 127, 675
DpnI	GATC	2 cut(s)	395, 514
DpnII	GATC	2 cut(s)	393, 512
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	146, 379
Eco31I	GGTCTC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	141, 201
EcoT14I	CCWWGG	2 cut(s)	146, 379
ErhI	CCWWGG	2 cut(s)	146, 379
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	4 cut(s)	475, 600, 639, 653
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	4 cut(s)	471, 596, 635, 649
FauI	CCCGC	1 cut(s)	515
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	165, 389
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	4 cut(s)	475, 600, 639, 653
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	245, 458
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	6 cut(s)	98, 130, 139, 160, 398, 676
Hpy188III	TCNNGA	5 cut(s)	219, 269, 310, 650, 783
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	2 cut(s)	340, 761
HpyCH4V	TGCA	2 cut(s)	434, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 636
HpyF3I	CTNAG	3 cut(s)	80, 127, 675
Hsp92II	CATG	4 cut(s)	475, 600, 639, 653
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	393, 512
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	5 cut(s)	204, 274, 323, 448, 482
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	2 cut(s)	89, 151
MaeI	CTAG	2 cut(s)	165, 389
MaeIII	GTNAC	1 cut(s)	755
MalI	GATC	2 cut(s)	395, 514
MboI	GATC	2 cut(s)	393, 512
MboII	GAAGA	6 cut(s)	163, 191, 371, 566, 745, 748
MhlI	GDGCHC	1 cut(s)	551
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	273, 302, 327, 346, 421, 477, 670, 683
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	38, 72, 115, 565, 657, 703
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	404, 620
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	11, 636
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	2 cut(s)	393, 512
NlaIII	CATG	4 cut(s)	475, 600, 639, 653
NmuCI	GTSAC	1 cut(s)	755
PagI	TCATGA	1 cut(s)	649
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	759
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	404, 620
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	393, 512
ScaI	AGTACT	1 cut(s)	415
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	551
SetI	ASST	3 cut(s)	16, 81, 148
SfaNI	GCATC	2 cut(s)	89, 151
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	8 cut(s)	273, 302, 327, 346, 421, 477, 670, 683
SsiI	CCGC	3 cut(s)	108, 114, 508
SspMI	CTAG	2 cut(s)	165, 389
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	2 cut(s)	146, 379
TaaI	ACNGT	2 cut(s)	340, 761
TasI	AATT	8 cut(s)	273, 302, 327, 346, 421, 477, 670, 683
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	404, 620
Tru9I	TTAA	2 cut(s)	404, 620
TscAI	CASTG	2 cut(s)	377, 760
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	2 cut(s)	372, 585
TspRI	CASTG	2 cut(s)	377, 760
XapI	RAATTY	3 cut(s)	346, 477, 683
XspI	CTAG	2 cut(s)	165, 389
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.