Rw2G039040

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
64010230 .. 64013637
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039040.1

Sequence Viewer

Length: 1275 bp
ATGGCCATAGCAGCTATCAACGTTAAGCCGTCGCCTTTCTGTGTTCCCAAGCCTCAAAACCCTTCAAAGCTTAGGGTTTTCACTCTCCGATGCTCCTCGGCCACCGCTAATGCCGTCTCAGGCTTGGTCGAAAGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATATGGAGAGCAAAGTCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTATTACAGACCCGAGTTATGCTGGCCAATTTGTCCTGATGACAAACCCCCAAATTGGAAATACTGGTGTAAATTTTGACGATGAAGAATCAAGGCATTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATTATAGATGTTCAGAAACTCTTGGTGATTATTTAGCAAAAAGAAATATCATGGGAATTTATGATGTTGACACGCGGGCTATCACCCGTAGATTAAGGCAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAGAGACCAAAACAGATGAGGAACTATTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGTGTGTCATGCAAGACCCCTCATGAGTGGGTTGATAAAACCAATTCTGAGTGGGAATTTATGTCCAATAGAAAAGATAAAGAGGCTTTTCATGTTGTTGCATATGATTTTGGAATCAAGAGCAACATACTTAGGCGATTGGCTTCCTATGGCTGCAAAATTACTGTGGTACCTTCAACGTGGCCAGCATCAGAGACTCTTAAGATGAAACCAGATGGGGTTCTTTTCAGCAATGGCCCCGGAGACCCATCTGCGGTTCCCTATGCTGTTGAAACGGTCAAGGAGATTCTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGCCATCAGTTGCTTGGCTTGGCATTAGGCGGTGCAACTTTTAAAATGAAGTTTGGTCACCACGGAGGAAATCATCCAGTCCGTAATCTTCGTACTGGAGATGTTGAGATAAGCGCTCAGAATCACAACTATGCGGTTGACCCCAAATCACTTCCAGATGGTGTAGAAGTAACTCATGTCAATCTCAACGATGGAAGCTGCGCTGGCCTTGCTTATCCTGCACGAAACATCATGTCTATTCAGTACCACCCTGAAGCATCCCCAGGACCTCATGACTCAGATTATGCTTTTAGAGAATTCATTGAGCTAATGAAGAGAGTGAAAGTAAATGCATGA

Protein Analysis

424

Amino Acids

46.46

Weight (kDa)

6.43

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_sm_chain PF00988 54 - 178 3.5e-47 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase PF00117 240 - 415 3.6e-55 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 787
AccII CGCG 1 cut(s) 487
AciI CCGC 5 cut(s) 105, 487, 872, 969, 1073
AclI AACGTT 1 cut(s) 21
AcoI YGGCCR 4 cut(s) 3, 99, 289, 800
AcsI RAATTY 5 cut(s) 337, 468, 674, 930, 1235
AcuI CTGAAG 3 cut(s) 132, 192, 1212
AfaI GTAC 4 cut(s) 406, 789, 1033, 1184
AfeI AGCGCT 1 cut(s) 1054
AfiI CCNNNNNNNGG 4 cut(s) 252, 320, 871, 926
AflII CTTAAG 1 cut(s) 818
AgsI TTSAA 7 cut(s) 66, 170, 180, 238, 411, 795, 890
AjnI CCWGG 1 cut(s) 1201
AluBI AGCT 4 cut(s) 14, 70, 1137, 1246
AluI AGCT 4 cut(s) 14, 70, 1137, 1246
Alw21I GWGCWC 1 cut(s) 542
Alw26I GTCTC 5 cut(s) 121, 542, 585, 806, 855
Ama87I CYCGRG 1 cut(s) 277
Aor51HI AGCGCT 1 cut(s) 1054
AoxI GGCC 7 cut(s) 3, 99, 289, 800, 853, 940, 1144
ApeKI GCWGC 3 cut(s) 11, 771, 1137
ApoI RAATTY 5 cut(s) 337, 468, 674, 930, 1235
Asp718I GGTACC 1 cut(s) 787
AspLEI GCGC 2 cut(s) 1055, 1142
AspS9I GGNCC 3 cut(s) 854, 940, 1205
AsuC2I CCSGG 2 cut(s) 253, 858
AsuHPI GGTGA 4 cut(s) 236, 449, 487, 989
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 1 cut(s) 1205
BaeI ACNNNNGTAYC 2 cut(s) 771, 804
BalI TGGCCA 3 cut(s) 5, 291, 802
BanI GGYRCC 1 cut(s) 787
BarI GAAGNNNNNNTAC 2 cut(s) 391, 423
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 3 cut(s) 23, 758, 1124
BccI CCATC 7 cut(s) 167, 509, 827, 874, 951, 1091, 1124
BceAI ACGGC 2 cut(s) 13, 98
BciT130I CCWGG 1 cut(s) 1203
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 2 cut(s) 253, 858
BcoDI GTCTC 5 cut(s) 121, 542, 585, 806, 855
BfaI CTAG 2 cut(s) 156, 380
BfoI RGCGCY 1 cut(s) 1056
BfrI CTTAAG 1 cut(s) 818
BisI GCNGC 3 cut(s) 12, 772, 1138
BlsI GCNGC 3 cut(s) 13, 773, 1139
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 3 cut(s) 253, 858, 1203
Bme18I GGWCC 1 cut(s) 1205
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 854, 940, 1205
BmiI GGNNCC 5 cut(s) 214, 789, 856, 876, 918
BmrFI CCNGG 3 cut(s) 253, 858, 1203
BmsI GCATC 4 cut(s) 80, 142, 815, 1205
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 1056
Bpu10I CCTNAGC 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 253, 858
BsaI GGTCTC 2 cut(s) 542, 855
BsaJI CCNNGG 6 cut(s) 96, 137, 370, 856, 1000, 1201
Bsc4I CCNNNNNNNGG 4 cut(s) 252, 320, 871, 926
Bse1I ACTGG 3 cut(s) 334, 1016, 1039
Bse3DI GCAATG 2 cut(s) 361, 856
BseBI CCWGG 1 cut(s) 1203
BseDI CCNNGG 6 cut(s) 96, 137, 370, 856, 1000, 1201
BseGI GGATG 3 cut(s) 242, 1012, 1196
BseLI CCNNNNNNNGG 4 cut(s) 252, 320, 871, 926
BseMI GCAATG 2 cut(s) 361, 856
BseMII CTCAG 4 cut(s) 132, 657, 1070, 1230
BseNI ACTGG 3 cut(s) 334, 1016, 1039
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 3 cut(s) 23, 758, 1124
BsgI GTGCAG 1 cut(s) 1143
Bsh1236I CGCG 1 cut(s) 487
BshFI GGCC 7 cut(s) 5, 101, 291, 802, 855, 942, 1146
BshNI GGYRCC 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 2 cut(s) 252, 858
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 4 cut(s) 252, 320, 871, 926
BsmAI GTCTC 5 cut(s) 121, 542, 585, 806, 855
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 7 cut(s) 5, 101, 291, 802, 855, 942, 1146
Bso31I GGTCTC 2 cut(s) 542, 855
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 5 cut(s) 105, 487, 872, 969, 1073
BspANI GGCC 7 cut(s) 5, 101, 291, 802, 855, 942, 1146
BspCNI CTCAG 4 cut(s) 131, 658, 1069, 1229
BspFNI CGCG 1 cut(s) 487
BspHI TCATGA 2 cut(s) 640, 1210
BspLI GGNNCC 5 cut(s) 214, 789, 856, 876, 918
BspT107I GGYRCC 1 cut(s) 787
BspTI CTTAAG 1 cut(s) 818
BspTNI GGTCTC 2 cut(s) 542, 855
BsrDI GCAATG 2 cut(s) 361, 856
BsrI ACTGG 3 cut(s) 334, 1016, 1039
BssECI CCNNGG 6 cut(s) 96, 137, 370, 856, 1000, 1201
BssMI GATC 1 cut(s) 384
BssT1I CCWWGG 2 cut(s) 137, 370
Bst2UI CCWGG 1 cut(s) 1203
Bst4CI ACNGT 2 cut(s) 784, 895
Bst6I CTCTTC 2 cut(s) 540, 1247
BstAFI CTTAAG 1 cut(s) 818
BstC8I GCNNGC 4 cut(s) 289, 489, 804, 1144
BstDEI CTNAG 6 cut(s) 71, 118, 666, 749, 1056, 1216
BstDSI CCRYGG 1 cut(s) 1000
BstEII GGTNACC 1 cut(s) 995
BstF5I GGATG 3 cut(s) 242, 1012, 1196
BstFNI CGCG 1 cut(s) 487
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 2 cut(s) 1055, 1142
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 5 cut(s) 121, 542, 585, 806, 855
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 4 cut(s) 11, 1143, 1148, 1157
BstNI CCWGG 1 cut(s) 1203
BstPI GGTNACC 1 cut(s) 995
BstSCI CCNGG 3 cut(s) 251, 856, 1201
BstUI CGCG 1 cut(s) 487
BstV1I GCAGC 3 cut(s) 23, 758, 1124
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 7 cut(s) 5, 101, 291, 802, 855, 942, 1146
BtgI CCRYGG 1 cut(s) 1000
BtsCI GGATG 3 cut(s) 242, 1012, 1196
Cac8I GCNNGC 4 cut(s) 289, 489, 804, 1144
CciI TCATGA 2 cut(s) 640, 1210
CfoI GCGC 2 cut(s) 1055, 1142
Cfr13I GGNCC 3 cut(s) 854, 940, 1205
Csp6I GTAC 4 cut(s) 405, 788, 1032, 1183
CviQI GTAC 4 cut(s) 405, 788, 1032, 1183
DdeI CTNAG 6 cut(s) 71, 118, 666, 749, 1056, 1216
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
DraI TTTAAA 1 cut(s) 982
EaeI YGGCCR 4 cut(s) 3, 99, 289, 800
Eam1104I CTCTTC 2 cut(s) 540, 1247
EarI CTCTTC 2 cut(s) 540, 1247
Eco130I CCWWGG 2 cut(s) 137, 370
Eco31I GGTCTC 2 cut(s) 542, 855
Eco47I GGWCC 1 cut(s) 1205
Eco47III AGCGCT 1 cut(s) 1054
Eco57I CTGAAG 3 cut(s) 132, 192, 1212
Eco88I CYCGRG 1 cut(s) 277
Eco91I GGTNACC 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 1205
EcoO65I GGTNACC 1 cut(s) 995
EcoRI GAATTC 1 cut(s) 1235
EcoRII CCWGG 1 cut(s) 1201
EcoT14I CCWWGG 2 cut(s) 137, 370
EcoT22I ATGCAT 1 cut(s) 1273
ErhI CCWWGG 2 cut(s) 137, 370
Esp3I CGTCTC 1 cut(s) 121
FaqI GGGAC 1 cut(s) 605
FauI CCCGC 1 cut(s) 480
FauNDI CATATG 1 cut(s) 721
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 3 cut(s) 12, 772, 1138
FokI GGATG 3 cut(s) 229, 999, 1183
Fsp4HI GCNGC 3 cut(s) 12, 772, 1138
FspBI CTAG 2 cut(s) 156, 380
GlaI GCGC 2 cut(s) 1054, 1141
GluI GCNGC 3 cut(s) 12, 772, 1138
GsuI CTGGAG 1 cut(s) 1056
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 7 cut(s) 5, 101, 291, 802, 855, 942, 1146
HapII CCGG 2 cut(s) 252, 858
HhaI GCGC 2 cut(s) 1055, 1142
Hin6I GCGC 2 cut(s) 1053, 1140
HinP1I GCGC 2 cut(s) 1053, 1140
HincII GTYRAC 2 cut(s) 481, 1078
HindII GTYRAC 2 cut(s) 481, 1078
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 6 cut(s) 353, 732, 814, 904, 1060, 1214
HpaII CCGG 2 cut(s) 252, 858
HphI GGTGA 4 cut(s) 236, 449, 487, 989
Hpy166II GTNNAC 2 cut(s) 481, 1078
Hpy188I TCNGA 8 cut(s) 89, 151, 389, 427, 667, 811, 1059, 1219
Hpy188III TCNNGA 7 cut(s) 210, 260, 301, 641, 736, 1094, 1211
Hpy8I GTNNAC 2 cut(s) 481, 1078
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 72, 801
HpyCH4III ACNGT 2 cut(s) 784, 895
HpyCH4IV ACGT 2 cut(s) 21, 797
HpyCH4V TGCA 7 cut(s) 630, 719, 774, 936, 974, 1160, 1271
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 1143, 1148, 1157
HpyF3I CTNAG 6 cut(s) 71, 118, 666, 749, 1056, 1216
HpySE526I ACGT 2 cut(s) 21, 797
HspAI GCGC 2 cut(s) 1053, 1140
KpnI GGTACC 1 cut(s) 791
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 3 cut(s) 23, 758, 1124
LweI GCATC 4 cut(s) 80, 142, 815, 1205
MaeI CTAG 2 cut(s) 156, 380
MaeII ACGT 2 cut(s) 21, 797
MaeIII GTNAC 2 cut(s) 995, 1108
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 6 cut(s) 154, 182, 362, 557, 1019, 1264
MhlI GDGCHC 1 cut(s) 542
MlsI TGGCCA 3 cut(s) 5, 291, 802
MluNI TGGCCA 3 cut(s) 5, 291, 802
MlyI GAGTC 2 cut(s) 808, 1208
MnlI CCTC 7 cut(s) 63, 106, 556, 648, 694, 998, 1218
Mox20I TGGCCA 3 cut(s) 5, 291, 802
Mph1103I ATGCAT 1 cut(s) 1273
MscI TGGCCA 3 cut(s) 5, 291, 802
MseI TTAA 6 cut(s) 24, 395, 506, 611, 819, 981
MslI CAYNNNNRTG 1 cut(s) 1068
Msp20I TGGCCA 3 cut(s) 5, 291, 802
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 2 cut(s) 252, 858
MspR9I CCNGG 3 cut(s) 253, 858, 1203
MvaI CCWGG 1 cut(s) 1203
MvnI CGCG 1 cut(s) 487
MwoI GCNNNNNNNGC 4 cut(s) 11, 1143, 1148, 1157
NciI CCSGG 2 cut(s) 253, 858
NdeI CATATG 1 cut(s) 721
NdeII GATC 1 cut(s) 384
NlaIV GGNNCC 5 cut(s) 214, 789, 856, 876, 918
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 995
NsiI ATGCAT 1 cut(s) 1273
PagI TCATGA 2 cut(s) 640, 1210
PfeI GAWTC 4 cut(s) 353, 732, 904, 1060
PkrI GCNGC 3 cut(s) 13, 773, 1139
PleI GAGTC 2 cut(s) 808, 1208
PpsI GAGTC 2 cut(s) 808, 1208
PpuMI RGGWCCY 1 cut(s) 1205
Psp1406I AACGTT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 1205
Psp6I CCWGG 1 cut(s) 1201
PspEI GGTNACC 1 cut(s) 995
PspGI CCWGG 1 cut(s) 1201
PspN4I GGNNCC 5 cut(s) 214, 789, 856, 876, 918
PspPI GGNCC 3 cut(s) 854, 940, 1205
PspPPI RGGWCCY 1 cut(s) 1205
RsaI GTAC 4 cut(s) 406, 789, 1033, 1184
RsaNI GTAC 4 cut(s) 405, 788, 1032, 1183
RseI CAYNNNNRTG 1 cut(s) 1068
SaqAI TTAA 6 cut(s) 24, 395, 506, 611, 819, 981
SatI GCNGC 3 cut(s) 12, 772, 1138
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 3 cut(s) 854, 940, 1205
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 2 cut(s) 808, 1208
ScrFI CCNGG 3 cut(s) 253, 858, 1203
SduI GDGCHC 1 cut(s) 542
SfaNI GCATC 4 cut(s) 80, 142, 815, 1205
SinI GGWCC 1 cut(s) 1205
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SsiI CCGC 5 cut(s) 105, 487, 872, 969, 1073
SspMI CTAG 2 cut(s) 156, 380
StyD4I CCNGG 3 cut(s) 251, 856, 1201
StyI CCWWGG 2 cut(s) 137, 370
TaaI ACNGT 2 cut(s) 784, 895
TaiI ACGT 2 cut(s) 24, 800
TaqI TCGA 1 cut(s) 129
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 4 cut(s) 353, 732, 904, 1060
Tru1I TTAA 6 cut(s) 24, 395, 506, 611, 819, 981
Tru9I TTAA 6 cut(s) 24, 395, 506, 611, 819, 981
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 3 cut(s) 11, 771, 1137
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 7 cut(s) 363, 576, 698, 839, 1001, 1228, 1265
TspGWI ACGGA 2 cut(s) 1010, 1017
Vha464I CTTAAG 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 1205
XapI RAATTY 5 cut(s) 337, 468, 674, 930, 1235
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XspI CTAG 2 cut(s) 156, 380
ZrmI AGTACT 1 cut(s) 406
Zsp2I ATGCAT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.