Rh5AG514000

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
86883631 .. 86909689
26059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG514000.1

Sequence Viewer

Length: 1281 bp
ATGGCCACAGCAGCTGTCAACTTAGCCCTGGTAAAGTCGTCGCCTTTCTTTGTTCCCAAGCCTCAAAACCCTTCAAGGCTTAGGGTTTTCACTCTCCGATGCTCCTCCGCCACCGCCAATGCCGTCTCAGACTTGTCCGAAAGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATATGGAGAGCAAAGTCATTTGGTGCTTCTGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACGGGGTATCAAGAAATTATTACAGACCCGAGTTATGCTGGCCAATTTGTCCTGATGACAAACCCCCAAATTGGAAATACTGGTGTAAATTTTGATGATGAAGAATCAAGGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATTATAGATGTGCAGAAACTCTTGGTGATTATTTAGCCAAAAGGAATATCATGGGAATTTATGATGTTGACACACGGGCTATCACCCGCAGATTAAGGCAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAGAGACCAAAACTGATGAGGAACTATTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGTGTGTCATGCAAGACCCCTCATGAGTGGGTTGATAAAACCAATTCTGAGTGGGAATTTATGTCCAAAAGAGATGGAGAGGCTTTTCGTGTTGTTGCATATGATTTTGGAATCAAGAGCAACATACTTAGGCGATTGGCTTCCTATGGCTGCAAAATTACTGTGGTACCTTCAACATGGCCAGCATCAGAGACTCTTAAGATGAAACCAGATGGGGTCCTTTTCAGCAATGGCCCCGGAGACCCATCTGCAGTTCCGTATGCTGTTGAAACAGTCAAGCAGATTCTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGCCATCAGTTGCTTGGCTTGGCATTAGGTGGTACAACTTTTAAAATGAAGTTCGGTCACCACGGAGGAAATCATCCGGTCCGTAATCTTCGTACTGGAGATGTTGAGATAAGCGCCCAGAATCACAACTATGCGGTTGACCCCAAATCACTTCCAGATGGTGTAGAAGTAACTCATGTAAATCTCAACGATGGAAGCTGTGCTGGCCTTGCTTATCCTGCACGAAACATCATGTCTATTCAGTACCACCCTGAAGCATCCCCAGGACCTCATGATTCAGATTATGCTTTTAGAGAATTCATTGAGTTGATGAAGAGAGTAAAAGTAAATGCATGA

Protein Analysis

426

Amino Acids

46.68

Weight (kDa)

6.33

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_sm_chain PF00988 57 - 181 3.1e-47 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase PF00117 242 - 417 2.3e-55 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 793
AccB1I GGYRCC 1 cut(s) 793
AciI CCGC 4 cut(s) 108, 114, 508, 1079
AcoI YGGCCR 3 cut(s) 3, 298, 806
AcsI RAATTY 5 cut(s) 346, 477, 683, 936, 1241
AcuI CTGAAG 2 cut(s) 141, 1218
AfaI GTAC 5 cut(s) 415, 795, 979, 1039, 1190
AfiI CCNNNNNNNGG 3 cut(s) 261, 329, 932
AflII CTTAAG 1 cut(s) 824
AgsI TTSAA 7 cut(s) 75, 179, 189, 247, 420, 801, 896
AjnI CCWGG 2 cut(s) 27, 1207
AluBI AGCT 2 cut(s) 14, 1143
AluI AGCT 2 cut(s) 14, 1143
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 5 cut(s) 130, 551, 594, 812, 861
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 6 cut(s) 3, 298, 806, 859, 946, 1150
ApeKI GCWGC 2 cut(s) 11, 777
ApoI RAATTY 5 cut(s) 346, 477, 683, 936, 1241
Asp718I GGTACC 1 cut(s) 793
AspLEI GCGC 1 cut(s) 1061
AspS9I GGNCC 5 cut(s) 844, 860, 946, 1024, 1211
AsuC2I CCSGG 1 cut(s) 864
AsuHPI GGTGA 4 cut(s) 245, 458, 496, 995
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 3 cut(s) 844, 1024, 1211
BaeI ACNNNNGTAYC 2 cut(s) 777, 810
BalI TGGCCA 3 cut(s) 5, 300, 808
BanI GGYRCC 1 cut(s) 793
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 2 cut(s) 23, 764
BccI CCATC 8 cut(s) 176, 518, 695, 833, 880, 957, 1097, 1130
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 29, 1209
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 1 cut(s) 864
BcoDI GTCTC 5 cut(s) 130, 551, 594, 812, 861
BfaI CTAG 2 cut(s) 165, 389
BfmI CTRYAG 1 cut(s) 876
BfoI RGCGCY 1 cut(s) 1062
BfrI CTTAAG 1 cut(s) 824
BisI GCNGC 2 cut(s) 12, 778
BlsI GCNGC 2 cut(s) 13, 779
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 3 cut(s) 29, 864, 1209
Bme18I GGWCC 3 cut(s) 844, 1024, 1211
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 5 cut(s) 844, 860, 946, 1024, 1211
BmiI GGNNCC 5 cut(s) 223, 795, 845, 862, 924
BmrFI CCNGG 3 cut(s) 29, 864, 1209
BmsI GCATC 4 cut(s) 89, 151, 821, 1211
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 1062
Bpu10I CCTNAGC 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 864
BsaI GGTCTC 2 cut(s) 551, 861
BsaJI CCNNGG 6 cut(s) 27, 146, 379, 862, 1006, 1207
BsaWI WCCGGW 1 cut(s) 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 329, 932
Bse1I ACTGG 2 cut(s) 343, 1045
Bse3DI GCAATG 1 cut(s) 862
BseBI CCWGG 2 cut(s) 29, 1209
BseDI CCNNGG 6 cut(s) 27, 146, 379, 862, 1006, 1207
BseGI GGATG 3 cut(s) 251, 1018, 1202
BseLI CCNNNNNNNGG 3 cut(s) 261, 329, 932
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 2 cut(s) 141, 666
BseNI ACTGG 2 cut(s) 343, 1045
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 23, 764
BsgI GTGCAG 2 cut(s) 453, 1149
BshFI GGCC 6 cut(s) 5, 300, 808, 861, 948, 1152
BshNI GGYRCC 1 cut(s) 793
BsiHKAI GWGCWC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 2 cut(s) 864, 1022
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 3 cut(s) 261, 329, 932
BsmAI GTCTC 5 cut(s) 130, 551, 594, 812, 861
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 6 cut(s) 5, 300, 808, 861, 948, 1152
Bso31I GGTCTC 2 cut(s) 551, 861
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 1 cut(s) 393
BspACI CCGC 4 cut(s) 108, 114, 508, 1079
BspANI GGCC 6 cut(s) 5, 300, 808, 861, 948, 1152
BspCNI CTCAG 2 cut(s) 140, 667
BspHI TCATGA 2 cut(s) 649, 1216
BspLI GGNNCC 5 cut(s) 223, 795, 845, 862, 924
BspMAI CTGCAG 1 cut(s) 880
BspT107I GGYRCC 1 cut(s) 793
BspTI CTTAAG 1 cut(s) 824
BspTNI GGTCTC 2 cut(s) 551, 861
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 2 cut(s) 343, 1045
BssECI CCNNGG 6 cut(s) 27, 146, 379, 862, 1006, 1207
BssMI GATC 1 cut(s) 393
BssT1I CCWWGG 2 cut(s) 146, 379
Bst2UI CCWGG 2 cut(s) 29, 1209
Bst4CI ACNGT 2 cut(s) 790, 901
Bst6I CTCTTC 2 cut(s) 549, 1253
BstAFI CTTAAG 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 298, 810, 1150
BstDEI CTNAG 5 cut(s) 22, 80, 127, 675, 755
BstDSI CCRYGG 1 cut(s) 1006
BstEII GGTNACC 1 cut(s) 1001
BstF5I GGATG 3 cut(s) 251, 1018, 1202
BstH2I RGCGCY 1 cut(s) 1062
BstHHI GCGC 1 cut(s) 1061
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 5 cut(s) 130, 551, 594, 812, 861
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 4 cut(s) 11, 1149, 1154, 1163
BstNI CCWGG 2 cut(s) 29, 1209
BstPI GGTNACC 1 cut(s) 1001
BstSCI CCNGG 3 cut(s) 27, 862, 1207
BstSFI CTRYAG 1 cut(s) 876
BstV1I GCAGC 2 cut(s) 23, 764
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 6 cut(s) 5, 300, 808, 861, 948, 1152
BtgI CCRYGG 1 cut(s) 1006
BtsCI GGATG 3 cut(s) 251, 1018, 1202
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 298, 810, 1150
CaiI CAGNNNCTG 1 cut(s) 14
CciI TCATGA 2 cut(s) 649, 1216
CfoI GCGC 1 cut(s) 1061
Cfr13I GGNCC 5 cut(s) 844, 860, 946, 1024, 1211
CpoI CGGWCCG 1 cut(s) 1024
Csp6I GTAC 5 cut(s) 414, 794, 978, 1038, 1189
CspI CGGWCCG 1 cut(s) 1024
CviQI GTAC 5 cut(s) 414, 794, 978, 1038, 1189
DdeI CTNAG 5 cut(s) 22, 80, 127, 675, 755
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
DraI TTTAAA 1 cut(s) 988
EaeI YGGCCR 3 cut(s) 3, 298, 806
Eam1104I CTCTTC 2 cut(s) 549, 1253
EarI CTCTTC 2 cut(s) 549, 1253
EciI GGCGGA 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 146, 379
Eco31I GGTCTC 2 cut(s) 551, 861
Eco47I GGWCC 3 cut(s) 844, 1024, 1211
Eco57I CTGAAG 2 cut(s) 141, 1218
Eco88I CYCGRG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 1001
EcoO109I RGGNCCY 2 cut(s) 844, 1211
EcoO65I GGTNACC 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 2 cut(s) 27, 1207
EcoT14I CCWWGG 2 cut(s) 146, 379
EcoT22I ATGCAT 1 cut(s) 1279
ErhI CCWWGG 2 cut(s) 146, 379
Esp3I CGTCTC 1 cut(s) 130
FaqI GGGAC 1 cut(s) 614
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 1 cut(s) 727
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 12, 778
FokI GGATG 3 cut(s) 238, 1005, 1189
Fsp4HI GCNGC 2 cut(s) 12, 778
FspBI CTAG 2 cut(s) 165, 389
GlaI GCGC 1 cut(s) 1060
GluI GCNGC 2 cut(s) 12, 778
GsuI CTGGAG 1 cut(s) 1062
HaeII RGCGCY 1 cut(s) 1062
HaeIII GGCC 6 cut(s) 5, 300, 808, 861, 948, 1152
HapII CCGG 2 cut(s) 864, 1022
HhaI GCGC 1 cut(s) 1061
Hin6I GCGC 1 cut(s) 1059
HinP1I GCGC 1 cut(s) 1059
HincII GTYRAC 3 cut(s) 19, 490, 1084
HindII GTYRAC 3 cut(s) 19, 490, 1084
HinfI GANTC 6 cut(s) 362, 738, 820, 910, 1066, 1220
HpaII CCGG 2 cut(s) 864, 1022
HphI GGTGA 4 cut(s) 245, 458, 496, 995
Hpy166II GTNNAC 3 cut(s) 19, 490, 1084
Hpy188I TCNGA 8 cut(s) 98, 130, 139, 160, 398, 676, 817, 1225
Hpy188III TCNNGA 7 cut(s) 219, 269, 310, 650, 742, 1100, 1217
Hpy8I GTNNAC 3 cut(s) 19, 490, 1084
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 81, 807
HpyCH4III ACNGT 2 cut(s) 790, 901
HpyCH4V TGCA 8 cut(s) 434, 639, 725, 780, 878, 942, 1166, 1277
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 1149, 1154, 1163
HpyF3I CTNAG 5 cut(s) 22, 80, 127, 675, 755
HspAI GCGC 1 cut(s) 1059
KpnI GGTACC 1 cut(s) 797
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 1 cut(s) 393
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 2 cut(s) 23, 764
LweI GCATC 4 cut(s) 89, 151, 821, 1211
MaeI CTAG 2 cut(s) 165, 389
MaeIII GTNAC 2 cut(s) 1001, 1114
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 6 cut(s) 163, 191, 371, 566, 1025, 1270
MhlI GDGCHC 1 cut(s) 551
MlsI TGGCCA 3 cut(s) 5, 300, 808
MluNI TGGCCA 3 cut(s) 5, 300, 808
MlyI GAGTC 1 cut(s) 814
MnlI CCTC 7 cut(s) 72, 115, 565, 657, 700, 1004, 1224
Mox20I TGGCCA 3 cut(s) 5, 300, 808
Mph1103I ATGCAT 1 cut(s) 1279
MscI TGGCCA 3 cut(s) 5, 300, 808
MseI TTAA 5 cut(s) 404, 515, 620, 825, 987
MslI CAYNNNNRTG 1 cut(s) 1074
Msp20I TGGCCA 3 cut(s) 5, 300, 808
MspA1I CMGCKG 1 cut(s) 14
MspCI CTTAAG 1 cut(s) 824
MspI CCGG 2 cut(s) 864, 1022
MspR9I CCNGG 3 cut(s) 29, 864, 1209
MvaI CCWGG 2 cut(s) 29, 1209
MwoI GCNNNNNNNGC 4 cut(s) 11, 1149, 1154, 1163
NciI CCSGG 1 cut(s) 864
NdeI CATATG 1 cut(s) 727
NdeII GATC 1 cut(s) 393
NlaIV GGNNCC 5 cut(s) 223, 795, 845, 862, 924
NmuCI GTSAC 1 cut(s) 1001
NsiI ATGCAT 1 cut(s) 1279
PagI TCATGA 2 cut(s) 649, 1216
PfeI GAWTC 5 cut(s) 362, 738, 910, 1066, 1220
PkrI GCNGC 2 cut(s) 13, 779
PleI GAGTC 1 cut(s) 814
PpsI GAGTC 1 cut(s) 814
PpuMI RGGWCCY 2 cut(s) 844, 1211
Psp5II RGGWCCY 2 cut(s) 844, 1211
Psp6I CCWGG 2 cut(s) 27, 1207
PspEI GGTNACC 1 cut(s) 1001
PspGI CCWGG 2 cut(s) 27, 1207
PspN4I GGNNCC 5 cut(s) 223, 795, 845, 862, 924
PspPI GGNCC 5 cut(s) 844, 860, 946, 1024, 1211
PspPPI RGGWCCY 2 cut(s) 844, 1211
PstI CTGCAG 1 cut(s) 880
PstNI CAGNNNCTG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 5 cut(s) 415, 795, 979, 1039, 1190
RsaNI GTAC 5 cut(s) 414, 794, 978, 1038, 1189
RseI CAYNNNNRTG 1 cut(s) 1074
Rsr2I CGGWCCG 1 cut(s) 1024
RsrII CGGWCCG 1 cut(s) 1024
SaqAI TTAA 5 cut(s) 404, 515, 620, 825, 987
SatI GCNGC 2 cut(s) 12, 778
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 5 cut(s) 844, 860, 946, 1024, 1211
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 1 cut(s) 814
ScrFI CCNGG 3 cut(s) 29, 864, 1209
SduI GDGCHC 1 cut(s) 551
SetI ASST 7 cut(s) 16, 148, 799, 924, 976, 1145, 1216
SfaNI GCATC 4 cut(s) 89, 151, 821, 1211
SfcI CTRYAG 1 cut(s) 876
SinI GGWCC 3 cut(s) 844, 1024, 1211
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SsiI CCGC 4 cut(s) 108, 114, 508, 1079
SspMI CTAG 2 cut(s) 165, 389
StyD4I CCNGG 3 cut(s) 27, 862, 1207
StyI CCWWGG 2 cut(s) 146, 379
TaaI ACNGT 2 cut(s) 790, 901
TaqII GACCGA 1 cut(s) 989
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 5 cut(s) 362, 738, 910, 1066, 1220
Tru1I TTAA 5 cut(s) 404, 515, 620, 825, 987
Tru9I TTAA 5 cut(s) 404, 515, 620, 825, 987
TscAI CASTG 1 cut(s) 377
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 2 cut(s) 11, 777
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 6 cut(s) 372, 585, 845, 1007, 1234, 1271
TspGWI ACGGA 3 cut(s) 873, 1016, 1023
TspRI CASTG 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 824
VpaK11BI GGWCC 3 cut(s) 844, 1024, 1211
XapI RAATTY 5 cut(s) 346, 477, 683, 936, 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
XspI CTAG 2 cut(s) 165, 389
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.