Rh5BG536900

Carbamoyl-phosphate synthase small

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
84728101 .. 84731499
3399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG536900.1

Sequence Viewer

Length: 1284 bp
ATGGCCACAGCAGCTATCAACTTATTCCTCGTAAAGCCGTCGCCTTTCTCTGTTCCCAAGCCTCAAAACCCTTCAAAGCTTAGGGTTTTCACTCTCCGATGCTCCTCCGCCACCGCCAATGCCGTCTCAGACTTGTCCGAAAGACCTTGGAAGACTTCAGATGCTAGACTTGTGCTTGAAGATGGTTCAATATGGAGGGCAAAGTCATTTGGTGCTTCTGGAACCCAAGTTGGTGAAGTTGTATTCAATACATCCTTGACCGGGTATCAAGAAATTATTACAGACCCGAGTTATGCTGGCCAATTTGTCCTGATGACAAACCCCCAAATTGGAAATACTGGTGTAAATTTTGATGATGAAGAATCAAGGCAGTGCTTCCTTGGTGGTCTAGTGATCAGAAGTTTAAGTATCAGTACTTCAAATCATAGATGTGCAGAAACTCTTGGTGATTATTTAGCAAAAAGGAATATCATGGGAATTTATGATGTTGACACACGGGCTATCACCCGCAGATTAAGGCAAGATGGAAGCCTTATTGGTGTTTTGAGCACAGAAGAGACCAAAACAGATGAGGAACTATTGGAAATGTCTCGTTCATGGGACATTGTTGGGGTTGATTTAATAAGTGGCGTGTCATGCAAGACCCCTCATGAGTGGGTTGATAAAACCAATTCTGAGTGGGAATTTATGTCCAAAAGAAAAGATGGAGAGGCTTTTCGTGTTGTTGCATATGATTTTGGAATCAAGAGCAACATACTTAGGCGATTGGCTTCCTATGGCTGCAAAATTACTGTGGTACCTTCAACATGGCCAGCATCAGAGACTCTTAAGATGAAACCAGATGGGGTCCTTTTCAGCAATGGCCCCGGAGACCCATCTGCAGTTCCCTATGCTGTTGAAACGGTCAAGCAGATTCTTGGAAAGGTTCCTGTTTTTGGAATTTGCATGGGCCATCAGTTGCTTGGCTTGGCATTAGGCGGAACAACTTTTAAAATGAAGTTCGGTCACCACGGAGGAAATCATCCAGTCCGTAATCTTCGTACTGGAGATGTTGAGATAAGCGCCCAGAATCACAACTATGCGGTTGATCCCAAATCACTTCCAGATGGTGTAGAAGTAACTCATGTAAATCTCAACGATGGAAGCTGCGCTGGCCTTGCTTATCCTGCACGAAACATCATGTCTATTCAGTACCATCCTGAAGCATCCCCAGGACCTCATGATTCAGATTATGCTTTTAGAGAATTCATTGAGCTGATGAAGAGAGTGAAAGTAAATGCATGA

Protein Analysis

427

Amino Acids

46.8

Weight (kDa)

6.57

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPSase_sm_chain PF00988 57 - 181 4.7e-47 Carbamoyl-phosphate synthase small chain, CPSase domain
GATase PF00117 243 - 418 2.3e-55 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 796
AccB1I GGYRCC 1 cut(s) 796
AciI CCGC 5 cut(s) 108, 114, 508, 978, 1082
AclWI GGATC 1 cut(s) 1082
AcoI YGGCCR 3 cut(s) 3, 298, 809
AcsI RAATTY 5 cut(s) 346, 477, 683, 939, 1244
AcuI CTGAAG 2 cut(s) 141, 1221
AfaI GTAC 4 cut(s) 415, 798, 1042, 1193
AfiI CCNNNNNNNGG 3 cut(s) 261, 329, 935
AflII CTTAAG 1 cut(s) 827
AgsI TTSAA 7 cut(s) 75, 179, 189, 247, 420, 804, 899
AjnI CCWGG 1 cut(s) 1210
AluBI AGCT 4 cut(s) 14, 79, 1146, 1255
AluI AGCT 4 cut(s) 14, 79, 1146, 1255
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 5 cut(s) 130, 551, 594, 815, 864
AlwI GGATC 1 cut(s) 1082
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 6 cut(s) 3, 298, 809, 862, 949, 1153
ApeKI GCWGC 3 cut(s) 11, 780, 1146
ApoI RAATTY 5 cut(s) 346, 477, 683, 939, 1244
Asp718I GGTACC 1 cut(s) 796
AspLEI GCGC 2 cut(s) 1064, 1151
AspS9I GGNCC 4 cut(s) 847, 863, 949, 1214
AsuC2I CCSGG 2 cut(s) 262, 867
AsuHPI GGTGA 4 cut(s) 245, 458, 496, 998
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 2 cut(s) 847, 1214
BaeI ACNNNNGTAYC 2 cut(s) 780, 813
BalI TGGCCA 3 cut(s) 5, 300, 811
BanI GGYRCC 1 cut(s) 796
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 3 cut(s) 23, 767, 1133
BccI CCATC 9 cut(s) 176, 518, 698, 836, 883, 960, 1100, 1133, 1203
BceAI ACGGC 2 cut(s) 22, 107
BciT130I CCWGG 1 cut(s) 1212
BclI TGATCA 1 cut(s) 393
BcnI CCSGG 2 cut(s) 262, 867
BcoDI GTCTC 5 cut(s) 130, 551, 594, 815, 864
BfaI CTAG 2 cut(s) 165, 389
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 1065
BfrI CTTAAG 1 cut(s) 827
BisI GCNGC 3 cut(s) 12, 781, 1147
BlsI GCNGC 3 cut(s) 13, 782, 1148
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 3 cut(s) 262, 867, 1212
Bme18I GGWCC 2 cut(s) 847, 1214
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 4 cut(s) 847, 863, 949, 1214
BmiI GGNNCC 5 cut(s) 223, 798, 848, 865, 927
BmrFI CCNGG 3 cut(s) 262, 867, 1212
BmsI GCATC 4 cut(s) 89, 151, 824, 1214
BpiI GAAGAC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 1065
Bpu10I CCTNAGC 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 262, 867
BsaI GGTCTC 2 cut(s) 551, 864
BsaJI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 329, 935
Bse1I ACTGG 3 cut(s) 343, 1025, 1048
Bse3DI GCAATG 1 cut(s) 865
BseBI CCWGG 1 cut(s) 1212
BseDI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BseGI GGATG 4 cut(s) 251, 1021, 1195, 1205
BseLI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 2 cut(s) 141, 666
BseNI ACTGG 3 cut(s) 343, 1025, 1048
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 23, 767, 1133
BsgI GTGCAG 2 cut(s) 453, 1152
BshFI GGCC 6 cut(s) 5, 300, 811, 864, 951, 1155
BshNI GGYRCC 1 cut(s) 796
BsiHKAI GWGCWC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 2 cut(s) 261, 867
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 3 cut(s) 261, 329, 935
BsmAI GTCTC 5 cut(s) 130, 551, 594, 815, 864
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 6 cut(s) 5, 300, 811, 864, 951, 1155
Bso31I GGTCTC 2 cut(s) 551, 864
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 2 cut(s) 393, 1087
BspACI CCGC 5 cut(s) 108, 114, 508, 978, 1082
BspANI GGCC 6 cut(s) 5, 300, 811, 864, 951, 1155
BspCNI CTCAG 2 cut(s) 140, 667
BspHI TCATGA 2 cut(s) 649, 1219
BspLI GGNNCC 5 cut(s) 223, 798, 848, 865, 927
BspMAI CTGCAG 1 cut(s) 883
BspPI GGATC 1 cut(s) 1082
BspT107I GGYRCC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 2 cut(s) 551, 864
BsrDI GCAATG 1 cut(s) 865
BsrI ACTGG 3 cut(s) 343, 1025, 1048
BssECI CCNNGG 5 cut(s) 146, 379, 865, 1009, 1210
BssMI GATC 2 cut(s) 393, 1087
BssT1I CCWWGG 2 cut(s) 146, 379
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 2 cut(s) 793, 904
Bst6I CTCTTC 2 cut(s) 549, 1256
BstAFI CTTAAG 1 cut(s) 827
BstC8I GCNNGC 3 cut(s) 298, 813, 1153
BstDEI CTNAG 4 cut(s) 80, 127, 675, 758
BstDSI CCRYGG 1 cut(s) 1009
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 4 cut(s) 251, 1021, 1195, 1205
BstH2I RGCGCY 1 cut(s) 1065
BstHHI GCGC 2 cut(s) 1064, 1151
BstKTI GATC 2 cut(s) 396, 1090
BstMAI GTCTC 5 cut(s) 130, 551, 594, 815, 864
BstMBI GATC 2 cut(s) 393, 1087
BstMWI GCNNNNNNNGC 5 cut(s) 11, 636, 1152, 1157, 1166
BstNI CCWGG 1 cut(s) 1212
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 3 cut(s) 260, 865, 1210
BstSFI CTRYAG 1 cut(s) 879
BstV1I GCAGC 3 cut(s) 23, 767, 1133
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 6 cut(s) 5, 300, 811, 864, 951, 1155
BtgI CCRYGG 1 cut(s) 1009
BtsCI GGATG 4 cut(s) 251, 1021, 1195, 1205
BtsI GCAGTG 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 298, 813, 1153
CciI TCATGA 2 cut(s) 649, 1219
CfoI GCGC 2 cut(s) 1064, 1151
Cfr13I GGNCC 4 cut(s) 847, 863, 949, 1214
Csp6I GTAC 4 cut(s) 414, 797, 1041, 1192
CviQI GTAC 4 cut(s) 414, 797, 1041, 1192
DdeI CTNAG 4 cut(s) 80, 127, 675, 758
DpnI GATC 2 cut(s) 395, 1089
DpnII GATC 2 cut(s) 393, 1087
DraI TTTAAA 1 cut(s) 991
EaeI YGGCCR 3 cut(s) 3, 298, 809
Eam1104I CTCTTC 2 cut(s) 549, 1256
EarI CTCTTC 2 cut(s) 549, 1256
EciI GGCGGA 2 cut(s) 97, 993
Eco130I CCWWGG 2 cut(s) 146, 379
Eco31I GGTCTC 2 cut(s) 551, 864
Eco47I GGWCC 2 cut(s) 847, 1214
Eco57I CTGAAG 2 cut(s) 141, 1221
Eco88I CYCGRG 1 cut(s) 286
Eco91I GGTNACC 1 cut(s) 1004
EcoO109I RGGNCCY 2 cut(s) 847, 1214
EcoO65I GGTNACC 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 1244
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 2 cut(s) 146, 379
EcoT22I ATGCAT 1 cut(s) 1282
ErhI CCWWGG 2 cut(s) 146, 379
Esp3I CGTCTC 1 cut(s) 130
FaqI GGGAC 1 cut(s) 614
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 1 cut(s) 730
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 12, 781, 1147
FokI GGATG 4 cut(s) 238, 1008, 1182, 1192
Fsp4HI GCNGC 3 cut(s) 12, 781, 1147
FspBI CTAG 2 cut(s) 165, 389
GlaI GCGC 2 cut(s) 1063, 1150
GluI GCNGC 3 cut(s) 12, 781, 1147
GsuI CTGGAG 1 cut(s) 1065
HaeII RGCGCY 1 cut(s) 1065
HaeIII GGCC 6 cut(s) 5, 300, 811, 864, 951, 1155
HapII CCGG 2 cut(s) 261, 867
HhaI GCGC 2 cut(s) 1064, 1151
Hin6I GCGC 2 cut(s) 1062, 1149
HinP1I GCGC 2 cut(s) 1062, 1149
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 6 cut(s) 362, 741, 823, 913, 1069, 1223
HpaII CCGG 2 cut(s) 261, 867
HphI GGTGA 4 cut(s) 245, 458, 496, 998
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 8 cut(s) 98, 130, 139, 160, 398, 676, 820, 1228
Hpy188III TCNNGA 8 cut(s) 219, 269, 310, 650, 745, 1103, 1199, 1220
Hpy8I GTNNAC 1 cut(s) 490
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 81, 810
HpyCH4III ACNGT 2 cut(s) 793, 904
HpyCH4V TGCA 8 cut(s) 434, 639, 728, 783, 881, 945, 1169, 1280
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 636, 1152, 1157, 1166
HpyF3I CTNAG 4 cut(s) 80, 127, 675, 758
HspAI GCGC 2 cut(s) 1062, 1149
KpnI GGTACC 1 cut(s) 800
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 393, 1087
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 3 cut(s) 23, 767, 1133
LweI GCATC 4 cut(s) 89, 151, 824, 1214
MaeI CTAG 2 cut(s) 165, 389
MaeIII GTNAC 2 cut(s) 1004, 1117
MalI GATC 2 cut(s) 395, 1089
MboI GATC 2 cut(s) 393, 1087
MboII GAAGA 6 cut(s) 163, 191, 371, 566, 1028, 1273
MhlI GDGCHC 1 cut(s) 551
MlsI TGGCCA 3 cut(s) 5, 300, 811
MluNI TGGCCA 3 cut(s) 5, 300, 811
MlyI GAGTC 1 cut(s) 817
MnlI CCTC 9 cut(s) 38, 72, 115, 189, 565, 657, 703, 1007, 1227
Mox20I TGGCCA 3 cut(s) 5, 300, 811
Mph1103I ATGCAT 1 cut(s) 1282
MscI TGGCCA 3 cut(s) 5, 300, 811
MseI TTAA 5 cut(s) 404, 515, 620, 828, 990
MslI CAYNNNNRTG 2 cut(s) 429, 1077
Msp20I TGGCCA 3 cut(s) 5, 300, 811
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 2 cut(s) 261, 867
MspR9I CCNGG 3 cut(s) 262, 867, 1212
MvaI CCWGG 1 cut(s) 1212
MwoI GCNNNNNNNGC 5 cut(s) 11, 636, 1152, 1157, 1166
NciI CCSGG 2 cut(s) 262, 867
NdeI CATATG 1 cut(s) 730
NdeII GATC 2 cut(s) 393, 1087
NlaIV GGNNCC 5 cut(s) 223, 798, 848, 865, 927
NmuCI GTSAC 1 cut(s) 1004
NsiI ATGCAT 1 cut(s) 1282
PagI TCATGA 2 cut(s) 649, 1219
PfeI GAWTC 5 cut(s) 362, 741, 913, 1069, 1223
PkrI GCNGC 3 cut(s) 13, 782, 1148
PleI GAGTC 1 cut(s) 817
PpsI GAGTC 1 cut(s) 817
PpuMI RGGWCCY 2 cut(s) 847, 1214
Psp5II RGGWCCY 2 cut(s) 847, 1214
Psp6I CCWGG 1 cut(s) 1210
PspEI GGTNACC 1 cut(s) 1004
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 5 cut(s) 223, 798, 848, 865, 927
PspPI GGNCC 4 cut(s) 847, 863, 949, 1214
PspPPI RGGWCCY 2 cut(s) 847, 1214
PstI CTGCAG 1 cut(s) 883
RsaI GTAC 4 cut(s) 415, 798, 1042, 1193
RsaNI GTAC 4 cut(s) 414, 797, 1041, 1192
RseI CAYNNNNRTG 2 cut(s) 429, 1077
SaqAI TTAA 5 cut(s) 404, 515, 620, 828, 990
SatI GCNGC 3 cut(s) 12, 781, 1147
Sau3AI GATC 2 cut(s) 393, 1087
Sau96I GGNCC 4 cut(s) 847, 863, 949, 1214
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 3 cut(s) 262, 867, 1212
SduI GDGCHC 1 cut(s) 551
SetI ASST 8 cut(s) 16, 81, 148, 802, 927, 1148, 1219, 1257
SfaNI GCATC 4 cut(s) 89, 151, 824, 1214
SfcI CTRYAG 1 cut(s) 879
SinI GGWCC 2 cut(s) 847, 1214
SmiMI CAYNNNNRTG 2 cut(s) 429, 1077
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SsiI CCGC 5 cut(s) 108, 114, 508, 978, 1082
SspMI CTAG 2 cut(s) 165, 389
StyD4I CCNGG 3 cut(s) 260, 865, 1210
StyI CCWWGG 2 cut(s) 146, 379
TaaI ACNGT 2 cut(s) 793, 904
TaqII GACCGA 1 cut(s) 992
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 5 cut(s) 362, 741, 913, 1069, 1223
Tru1I TTAA 5 cut(s) 404, 515, 620, 828, 990
Tru9I TTAA 5 cut(s) 404, 515, 620, 828, 990
TscAI CASTG 1 cut(s) 377
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 3 cut(s) 11, 780, 1146
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 6 cut(s) 372, 585, 848, 1010, 1237, 1274
TspGWI ACGGA 2 cut(s) 1019, 1026
TspRI CASTG 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 847, 1214
XapI RAATTY 5 cut(s) 346, 477, 683, 939, 1244
XcmI CCANNNNNNNNNTGG 1 cut(s) 959
XspI CTAG 2 cut(s) 165, 389
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.