Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

14905230 .. 14907035

Gene Structure 1806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G42800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTTTTCCTCAGAGAAAACGAACACCTTCTTTCTCTTCTTCTGTTCTTGACTCTGTTTACCGTTCTATCGACGAATCTGACGGTCTCCAAAGTGACCTAAAAGGATCCATCAACGAAAATGTATCTTCATCATCATCCTCACCATCACCAAACAAGAAAGACGACAAGCTTACAACTCTAAGGCGAGCAATCATGGACGAAGAACACTGGCTTTACGCCCGAAGCAGCACCACTACCACTAACTCCTCTGATTCCTCTTCTTTTTCCTCTTCCGAGGCAGAGTCATATCGAACAAAGAGAAGGTTGAGAAAGCTTGCGGAACAAGGTAAAAGATCAGGTGATGAGAGACAGAGAACAAAGAGAACGGTAATGGACAACGATAGTAGATTGTTTTCCAAGTCCGATGATGATAAGAAGCCTAAAGCCGTGAAGATAATTGAGGAGCTAAAGAGATCGAAGCAGCCAGTGTCTCCTGGAGCGCGTCTCACTAGCTTCCTCAACTCGATCTTCCAATCTAACGCCAAGAAAGTGAAGCTTTGTTCTGTCGGTAAGACAACAGACGTTAAGTCCTCATCCTCAAAGTCTTGCTTCAGTCGAACAAGAAATAAAACCGACAACAACAACAACAACTGCAAGAAGTTGGAAAGGTCTATAAGATTCTATCCGGTTAGAGTAACCATTGATGGAGACTGCAGAGACTATGCTCAAAAACACATTACTCGCGTGAGGAAACCAATTCCAGAATTTACCGCTAAGAAGAGTGTCAAAGAGGAGATTAAGACCAACGATCATCACACTGAGTTTACTTGCATCACAAGAAATATAGGTTTGAAGGATTTTGTGAGAAGTAACAAATATGAAGGTAAAGAAGAGGAGGAGGATGCTTGGAGTCACTCAAGTTCGGATCTGTTTGAGCTTGATAGTTACCGGATCGGTATGGGGCGGTACTTAAAAGAACTTCCAGTCTATGAAACTACTGATTTCAAGACTAATCAAGCCATTGCTAGAAGCTTGCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.96

Weight (kDa)

9.6

Isoelectric Point (pI)

65.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	484, 726
AciI	CCGC	3 cut(s)	320, 753, 946
AclWI	GGATC	4 cut(s)	102, 115, 915, 941
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	1 cut(s)	577
AfaI	GTAC	1 cut(s)	950
AgsI	TTSAA	2 cut(s)	835, 988
AhdI	GACNNNNNGTC	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	7 cut(s)	172, 316, 448, 495, 538, 919, 1014
AluI	AGCT	7 cut(s)	172, 316, 448, 495, 538, 919, 1014
Alw26I	GTCTC	6 cut(s)	92, 343, 477, 491, 684, 693
AlwI	GGATC	4 cut(s)	102, 115, 915, 941
ApeKI	GCWGC	2 cut(s)	228, 463
ApoI	RAATTY	1 cut(s)	746
Asp700I	GAANNNNTTC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	484
AsuHPI	GGTGA	3 cut(s)	135, 141, 353
BamHI	GGATCC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	240, 475
BccI	CCATC	3 cut(s)	119, 154, 680
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	477
BcoDI	GTCTC	6 cut(s)	92, 343, 477, 491, 684, 693
BfaI	CTAG	2 cut(s)	492, 1008
BfmI	CTRYAG	1 cut(s)	694
BisI	GCNGC	2 cut(s)	229, 464
BlsI	GCNGC	2 cut(s)	230, 465
Bme1390I	CCNGG	1 cut(s)	477
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	822, 874
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpmI	CTGGAG	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	883
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	667, 930
Bse1I	ACTGG	3 cut(s)	215, 467, 965
Bse3DI	GCAATG	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	137, 575, 889
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	2 cut(s)	26, 792
BseNI	ACTGG	3 cut(s)	215, 467, 965
BseRI	GAGGAG	5 cut(s)	238, 458, 788, 890, 893
BseXI	GCAGC	2 cut(s)	240, 475
Bsh1236I	CGCG	2 cut(s)	484, 726
BsiSI	CCGG	2 cut(s)	668, 931
BsmAI	GTCTC	6 cut(s)	92, 343, 477, 491, 684, 693
BsmBI	CGTCTC	1 cut(s)	491
Bso31I	GGTCTC	1 cut(s)	92
Bsp143I	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
BspACI	CCGC	3 cut(s)	320, 753, 946
BspCNI	CTCAG	2 cut(s)	25, 793
BspFNI	CGCG	2 cut(s)	484, 726
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	698
BspPI	GGATC	4 cut(s)	102, 115, 915, 941
BspTNI	GGTCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	1002
BsrI	ACTGG	3 cut(s)	215, 467, 965
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	3 cut(s)	65, 86, 370
Bst6I	CTCTTC	5 cut(s)	43, 265, 277, 755, 867
BstC8I	GCNNGC	3 cut(s)	189, 318, 1016
BstDEI	CTNAG	4 cut(s)	12, 182, 756, 801
BstF5I	GGATG	3 cut(s)	137, 575, 889
BstFNI	CGCG	2 cut(s)	484, 726
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	7 cut(s)	110, 338, 458, 510, 793, 910, 936
BstMAI	GTCTC	6 cut(s)	92, 343, 477, 491, 684, 693
BstMBI	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	694
BstUI	CGCG	2 cut(s)	484, 726
BstV1I	GCAGC	2 cut(s)	240, 475
BstX2I	RGATCY	2 cut(s)	107, 907
BstYI	RGATCY	2 cut(s)	107, 907
BtsCI	GGATG	3 cut(s)	137, 575, 889
BtsIMutI	CAGTG	3 cut(s)	208, 474, 798
Cac8I	GCNNGC	3 cut(s)	189, 318, 1016
CfoI	GCGC	1 cut(s)	484
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	949
CviAII	CATG	1 cut(s)	196
CviQI	GTAC	1 cut(s)	949
DdeI	CTNAG	4 cut(s)	12, 182, 756, 801
DpnI	GATC	7 cut(s)	109, 337, 457, 509, 792, 909, 935
DpnII	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
DriI	GACNNNNNGTC	1 cut(s)	568
Eam1104I	CTCTTC	5 cut(s)	43, 265, 277, 755, 867
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	5 cut(s)	43, 265, 277, 755, 867
Eco31I	GGTCTC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	475
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	1 cut(s)	199
FaiI	YATR	8 cut(s)	197, 289, 656, 705, 827, 861, 941, 972
FalI	AAGNNNNNCTT	4 cut(s)	522, 554, 575, 607
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	229, 464
FokI	GGATG	3 cut(s)	124, 562, 896
Fsp4HI	GCNGC	2 cut(s)	229, 464
FspBI	CTAG	2 cut(s)	492, 1008
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	2 cut(s)	229, 464
GsuI	CTGGAG	1 cut(s)	498
HapII	CCGG	2 cut(s)	668, 931
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	4 cut(s)	170, 314, 536, 1012
HinfI	GANTC	6 cut(s)	53, 77, 254, 284, 660, 892
HpaII	CCGG	2 cut(s)	668, 931
HphI	GGTGA	3 cut(s)	135, 141, 353
Hpy166II	GTNNAC	2 cut(s)	61, 807
Hpy188I	TCNGA	6 cut(s)	15, 82, 253, 277, 406, 907
Hpy188III	TCNNGA	3 cut(s)	50, 743, 988
Hpy8I	GTNNAC	2 cut(s)	61, 807
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	4 cut(s)	39, 297, 829, 857
HpyCH4III	ACNGT	3 cut(s)	65, 86, 370
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	636, 696, 813
HpyF3I	CTNAG	4 cut(s)	12, 182, 756, 801
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
LmnI	GCTCC	2 cut(s)	445, 479
LpnPI	CCDG	9 cut(s)	196, 324, 462, 480, 489, 681, 756, 944, 978
Lsp1109I	GCAGC	2 cut(s)	240, 475
LweI	GCATC	2 cut(s)	822, 874
MaeI	CTAG	2 cut(s)	492, 1008
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	5 cut(s)	95, 676, 851, 893, 926
MalI	GATC	7 cut(s)	109, 337, 457, 509, 792, 909, 935
MboI	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
MflI	RGATCY	2 cut(s)	107, 907
MluCI	AATT	3 cut(s)	438, 738, 746
MlyI	GAGTC	3 cut(s)	47, 293, 901
MmeI	TCCRAC	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	3 cut(s)	567, 780, 953
MspI	CCGG	2 cut(s)	668, 931
MspR9I	CCNGG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	2 cut(s)	484, 726
NdeII	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	95, 893
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	77, 254, 660
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	230, 465
PleI	GAGTC	3 cut(s)	47, 292, 900
PpsI	GAGTC	3 cut(s)	47, 292, 900
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	698
PsuI	RGATCY	2 cut(s)	107, 907
RsaI	GTAC	1 cut(s)	950
RsaNI	GTAC	1 cut(s)	949
SaqAI	TTAA	3 cut(s)	567, 780, 953
SatI	GCNGC	2 cut(s)	229, 464
Sau3AI	GATC	7 cut(s)	107, 335, 455, 507, 790, 907, 933
SchI	GAGTC	3 cut(s)	47, 293, 901
ScrFI	CCNGG	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	822, 874
SfcI	CTRYAG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
Sse9I	AATT	3 cut(s)	438, 738, 746
SsiI	CCGC	3 cut(s)	320, 753, 946
SspMI	CTAG	2 cut(s)	492, 1008
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	3 cut(s)	65, 86, 370
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	5 cut(s)	72, 292, 458, 506, 598
TasI	AATT	3 cut(s)	438, 738, 746
TfiI	GAWTC	3 cut(s)	77, 254, 660
Tru1I	TTAA	3 cut(s)	567, 780, 953
Tru9I	TTAA	3 cut(s)	567, 780, 953
TscAI	CASTG	3 cut(s)	215, 474, 805
TseFI	GTSAC	2 cut(s)	95, 893
TseI	GCWGC	2 cut(s)	228, 463
Tsp45I	GTSAC	2 cut(s)	95, 893
TspDTI	ATGAA	3 cut(s)	120, 876, 987
TspRI	CASTG	3 cut(s)	215, 474, 805
XapI	RAATTY	1 cut(s)	746
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	2 cut(s)	492, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.