Rw6G043930

Protein BIG GRAIN 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
67056011 .. 67057649
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043930.1

Sequence Viewer

Length: 1332 bp
ATGTCTAGGTGGGAGAATCCATCGTCTTTCTCGTCCAGTCTGCTGGATGAAATCTACCGCTCAATTGACGAGGGCGAGAGGAGTCGTGGAGATGTGAAGTTTTACGGGGAGACGAAGACGGCGGCATTGGCGAAGAGACACAGCAAAAGCGGGAGGGATACGGCGGAGGAAGAGGAGATGGCGGCGCTTCGCAGAGCTTGTTTGATAGAGAAATGGATCGAGAAGAAGGCGAGCGAGAAGGCGGAGGCAGAAAGGAGGCAGAGTCGAGCTGAGTTGGGGAGGAACAGGAAACTGGACCGGGATCATGATGATGGTGTGTTTTTCAGTTCCAATTCATGCTCTTCGGAATCGAGTTCCGGTGGGTTCTCGTCGTCCGACGCTGAATCCATGTTTGGTTCTCGGCCGCAGCAGAGGTCGTCGTGTTTTGTTCCTTCCCTGTGGCCGAAGCCGATTCGGACCAGCGTCCAAACTCGGTCGGTGAAAACAGAGGAGAGGAAAAATGAGAAGAAACAGAGTGCTAGGTTTCAACCACAGAGAGACTATCACATGCTTGATGACTATCGTCACAGTCGTGTGTCAGATCAGACGACGAAGGTGGAGGAAAGTAGGATCAAGTCCAAATCAAGGGCATTGAAGCTTTACGACAATCTAAAGAAGGTGAAACAGCCAATTTCACCGGGCGGTCGCGTCGCAAATTTCCTCAATTCTCTGTTCACAACAGAGAAAATCAAGAAGACAAAGGGTACATCATCAGTTTCGGGGCATGAAGAAACAGAGAAGAAAATATATTCATTGCAGGGCCCAACGTGTTCTTCAGCCTCTTCTTTTTCACGGTCATGTCTAAGCAAAACCTCACCCAACACAAGAGAAAAATTGCGCAATGGGGTTAAGAAATCGGTCCAATTCTACCCGGTAAGTGTTGTCGTCGGTGAAGATTGTCGACCATGTGGGCAAAAATGCGTGTACGAAGAACAAGATGCACATCTTATGCCTGTAACTGTGCCAACAGCATGGAAAATCGGTCGATCTCAGTTCAGAAAAACAGAGGAGGAGATCGTCAAGCTTCGAGTGTTGGGGAAAAGCAGGCAAGCAGAAGAAGCAGCCAGGGAGTTTTTGAAAGACCACCGCCGGAACCAAGTTAAGACGGAGTCATTATTCAATAGAGATTATGACAATCATGATGATGATATGGATGACGATGCTGCTAGTTGTTCGAGTTCTGATCTTTTCGAGCTCGATCACCTAGCGGTGGTCGGAAAAGAAAGGTATCTGGAAGAGCTTCCGGTGTACGAAACCACACGTGTCAATCGTACGAATCGTGCCATTTTCTAA

Protein Analysis

443

Amino Acids

50.57

Weight (kDa)

9.12

Isoelectric Point (pI)

66.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 878
AccBSI CCGCTC 1 cut(s) 60
AccI GTMKAC 1 cut(s) 940
AccII CGCG 1 cut(s) 687
AclWI GGATC 3 cut(s) 224, 309, 617
AcoI YGGCCR 2 cut(s) 401, 440
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 798
AcvI CACGTG 1 cut(s) 1301
AfaI GTAC 4 cut(s) 745, 965, 1289, 1312
AfiI CCNNNNNNNGG 2 cut(s) 624, 1249
AflIII ACRYGT 3 cut(s) 806, 1298, 1300
AgsI TTSAA 4 cut(s) 527, 634, 1117, 1159
AjnI CCWGG 1 cut(s) 1103
AjuI GAANNNNNNNTTGG 4 cut(s) 375, 407, 796, 828
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 6 cut(s) 197, 269, 637, 1063, 1234, 1279
AluI AGCT 6 cut(s) 197, 269, 637, 1063, 1234, 1279
Alw21I GWGCWC 1 cut(s) 1236
Alw26I GTCTC 3 cut(s) 104, 130, 531
AlwI GGATC 3 cut(s) 224, 309, 617
AoxI GGCC 3 cut(s) 401, 440, 799
ApaI GGGCCC 1 cut(s) 803
ApeKI GCWGC 3 cut(s) 406, 1100, 1202
ApoI RAATTY 1 cut(s) 694
Asp700I GAANNNNTTC 1 cut(s) 1278
AspLEI GCGC 2 cut(s) 187, 879
AspS9I GGNCC 5 cut(s) 295, 456, 799, 800, 898
AsuC2I CCSGG 3 cut(s) 299, 678, 911
AsuHPI GGTGA 6 cut(s) 490, 666, 670, 846, 941, 1232
AvaII GGWCC 3 cut(s) 295, 456, 898
BaeGI GKGCMC 1 cut(s) 803
BanII GRGCYC 2 cut(s) 803, 1236
BbrPI CACGTG 1 cut(s) 1301
BbsI GAAGAC 2 cut(s) 122, 740
Bbv12I GWGCWC 1 cut(s) 1236
BbvI GCAGC 3 cut(s) 418, 1112, 1189
BccI CCATC 3 cut(s) 28, 172, 305
BceAI ACGGC 2 cut(s) 135, 177
BciT130I CCWGG 1 cut(s) 1105
BciVI GTATCC 1 cut(s) 151
BcnI CCSGG 3 cut(s) 299, 678, 911
BcoDI GTCTC 3 cut(s) 104, 130, 531
BfaI CTAG 4 cut(s) 6, 519, 1206, 1244
BfoI RGCGCY 1 cut(s) 188
BfuI GTATCC 1 cut(s) 151
BisI GCNGC 6 cut(s) 123, 183, 404, 407, 1101, 1203
BlsI GCNGC 6 cut(s) 124, 184, 405, 408, 1102, 1204
Bme1390I CCNGG 4 cut(s) 299, 678, 911, 1105
Bme18I GGWCC 3 cut(s) 295, 456, 898
BmgT120I GGNCC 5 cut(s) 295, 456, 799, 800, 898
BmiI GGNNCC 2 cut(s) 801, 1133
BmrFI CCNGG 4 cut(s) 299, 678, 911, 1105
BmsI GCATC 2 cut(s) 967, 1189
BoxI GACNNNNGTC 2 cut(s) 461, 561
BpiI GAAGAC 2 cut(s) 122, 740
BpuMI CCSGG 3 cut(s) 299, 678, 911
BsaAI YACGTR 1 cut(s) 1301
BsaBI GATNNNNATC 2 cut(s) 558, 981
BsaJI CCNNGG 1 cut(s) 1104
BsaWI WCCGGW 2 cut(s) 356, 1282
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 624, 1249
Bse1I ACTGG 2 cut(s) 36, 297
Bse3DI GCAATG 2 cut(s) 791, 886
Bse8I GATNNNNATC 2 cut(s) 558, 981
BseBI CCWGG 1 cut(s) 1105
BseDI CCNNGG 1 cut(s) 1104
BseGI GGATG 2 cut(s) 52, 1198
BseJI GATNNNNATC 2 cut(s) 558, 981
BseLI CCNNNNNNNGG 2 cut(s) 624, 1249
BseMI GCAATG 2 cut(s) 791, 886
BseMII CTCAG 2 cut(s) 261, 1043
BseNI ACTGG 2 cut(s) 36, 297
BseRI GAGGAG 5 cut(s) 94, 188, 503, 1061, 1064
BseSI GKGCMC 1 cut(s) 803
BseX3I CGGCCG 1 cut(s) 401
BseXI GCAGC 3 cut(s) 418, 1112, 1189
Bsh1236I CGCG 1 cut(s) 687
Bsh1285I CGRYCG 4 cut(s) 404, 476, 685, 1024
BshFI GGCC 3 cut(s) 403, 442, 801
BsiEI CGRYCG 4 cut(s) 404, 476, 685, 1024
BsiHKAI GWGCWC 1 cut(s) 1236
BsiSI CCGG 6 cut(s) 298, 357, 677, 911, 1129, 1283
BsiWI CGTACG 1 cut(s) 1310
BslI CCNNNNNNNGG 2 cut(s) 624, 1249
BsmAI GTCTC 3 cut(s) 104, 130, 531
BsmBI CGTCTC 1 cut(s) 104
BsnI GGCC 3 cut(s) 403, 442, 801
Bsp120I GGGCCC 1 cut(s) 799
Bsp1286I GDGCHC 2 cut(s) 803, 1236
Bsp143I GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
BspANI GGCC 3 cut(s) 403, 442, 801
BspCNI CTCAG 2 cut(s) 262, 1042
BspFNI CGCG 1 cut(s) 687
BspHI TCATGA 2 cut(s) 304, 1177
BspLI GGNNCC 2 cut(s) 801, 1133
BspPI GGATC 3 cut(s) 224, 309, 617
BspQI GCTCTTC 2 cut(s) 346, 1269
BsrBI CCGCTC 1 cut(s) 60
BsrDI GCAATG 2 cut(s) 791, 886
BsrI ACTGG 2 cut(s) 36, 297
BssECI CCNNGG 1 cut(s) 1104
BssMI GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
Bst2UI CCWGG 1 cut(s) 1105
Bst4CI ACNGT 3 cut(s) 569, 834, 1000
Bst6I CTCTTC 5 cut(s) 128, 165, 346, 826, 1269
BstBAI YACGTR 1 cut(s) 1301
BstC8I GCNNGC 3 cut(s) 232, 1085, 1089
BstDEI CTNAG 3 cut(s) 270, 842, 1029
BstF5I GGATG 2 cut(s) 52, 1198
BstFNI CGCG 1 cut(s) 687
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 2 cut(s) 187, 879
BstKTI GATC 8 cut(s) 219, 304, 583, 612, 1028, 1056, 1225, 1240
BstMAI GTCTC 3 cut(s) 104, 130, 531
BstMBI GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
BstMCI CGRYCG 4 cut(s) 404, 476, 685, 1024
BstMWI GCNNNNNNNGC 2 cut(s) 128, 1097
BstNI CCWGG 1 cut(s) 1105
BstNSI RCATGY 1 cut(s) 550
BstPAI GACNNNNGTC 2 cut(s) 461, 561
BstSCI CCNGG 4 cut(s) 297, 676, 909, 1103
BstSLI GKGCMC 1 cut(s) 803
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 3 cut(s) 418, 1112, 1189
BstV2I GAAGAC 2 cut(s) 122, 740
BstXI CCANNNNNNTGG 2 cut(s) 43, 1011
BstZI CGGCCG 1 cut(s) 401
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 3 cut(s) 403, 442, 801
BtsCI GGATG 2 cut(s) 52, 1198
Cac8I GCNNGC 3 cut(s) 232, 1085, 1089
CciI TCATGA 2 cut(s) 304, 1177
CfoI GCGC 2 cut(s) 187, 879
Cfr13I GGNCC 5 cut(s) 295, 456, 799, 800, 898
CseI GACGC 3 cut(s) 386, 451, 676
Csp6I GTAC 4 cut(s) 744, 964, 1288, 1311
CviAII CATG 9 cut(s) 305, 336, 388, 547, 764, 837, 945, 1011, 1178
CviQI GTAC 4 cut(s) 744, 964, 1288, 1311
DdeI CTNAG 3 cut(s) 270, 842, 1029
DpnI GATC 8 cut(s) 218, 303, 582, 611, 1027, 1055, 1224, 1239
DpnII GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
EaeI YGGCCR 2 cut(s) 401, 440
EagI CGGCCG 1 cut(s) 401
Eam1104I CTCTTC 5 cut(s) 128, 165, 346, 826, 1269
EarI CTCTTC 5 cut(s) 128, 165, 346, 826, 1269
EciI GGCGGA 2 cut(s) 179, 257
Ecl136II GAGCTC 1 cut(s) 1234
EclXI CGGCCG 1 cut(s) 401
Eco24I GRGCYC 2 cut(s) 803, 1236
Eco47I GGWCC 3 cut(s) 295, 456, 898
Eco52I CGGCCG 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 1234
Eco57I CTGAAG 1 cut(s) 798
Eco72I CACGTG 1 cut(s) 1301
EcoICRI GAGCTC 1 cut(s) 1234
EcoO109I RGGNCCY 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 1103
EcoT38I GRGCYC 2 cut(s) 803, 1236
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 9 cut(s) 308, 339, 391, 550, 767, 840, 948, 1014, 1181
FatI CATG 9 cut(s) 304, 335, 387, 546, 763, 836, 944, 1010, 1177
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 940
Fnu4HI GCNGC 6 cut(s) 123, 183, 404, 407, 1101, 1203
FokI GGATG 2 cut(s) 59, 1205
FriOI GRGCYC 2 cut(s) 803, 1236
Fsp4HI GCNGC 6 cut(s) 123, 183, 404, 407, 1101, 1203
FspBI CTAG 4 cut(s) 6, 519, 1206, 1244
FspI TGCGCA 1 cut(s) 878
GlaI GCGC 2 cut(s) 186, 878
GluI GCNGC 6 cut(s) 123, 183, 404, 407, 1101, 1203
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 3 cut(s) 403, 442, 801
HapII CCGG 6 cut(s) 298, 357, 677, 911, 1129, 1283
HgaI GACGC 3 cut(s) 386, 451, 676
HhaI GCGC 2 cut(s) 187, 879
Hin1II CATG 9 cut(s) 308, 339, 391, 550, 767, 840, 948, 1014, 1181
Hin6I GCGC 2 cut(s) 185, 877
HinP1I GCGC 2 cut(s) 185, 877
HincII GTYRAC 1 cut(s) 941
HindII GTYRAC 1 cut(s) 941
HindIII AAGCTT 2 cut(s) 635, 1061
HinfI GANTC 8 cut(s) 16, 82, 262, 347, 383, 451, 1148, 1315
HpaII CCGG 6 cut(s) 298, 357, 677, 911, 1129, 1283
HphI GGTGA 6 cut(s) 490, 666, 670, 846, 941, 1232
Hpy166II GTNNAC 4 cut(s) 714, 941, 964, 1288
Hpy188I TCNGA 8 cut(s) 346, 376, 456, 580, 585, 1037, 1222, 1256
Hpy188III TCNNGA 5 cut(s) 220, 305, 730, 1178, 1271
Hpy8I GTNNAC 4 cut(s) 714, 941, 964, 1288
Hpy99I CGWCG 6 cut(s) 373, 380, 421, 592, 692, 929
HpyAV CCTTC 5 cut(s) 220, 232, 441, 586, 649
HpyCH4III ACNGT 3 cut(s) 569, 834, 1000
HpyCH4IV ACGT 2 cut(s) 806, 1300
HpyCH4V TGCA 2 cut(s) 796, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 1097
HpyF3I CTNAG 3 cut(s) 270, 842, 1029
HpySE526I ACGT 2 cut(s) 806, 1300
Hsp92II CATG 9 cut(s) 308, 339, 391, 550, 767, 840, 948, 1014, 1181
HspAI GCGC 2 cut(s) 185, 877
Kzo9I GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
LguI GCTCTTC 2 cut(s) 346, 1269
Lsp1109I GCAGC 3 cut(s) 418, 1112, 1189
LweI GCATC 2 cut(s) 967, 1189
MaeI CTAG 4 cut(s) 6, 519, 1206, 1244
MaeII ACGT 2 cut(s) 806, 1300
MaeIII GTNAC 2 cut(s) 563, 994
MalI GATC 8 cut(s) 218, 303, 582, 611, 1027, 1055, 1224, 1239
MbiI CCGCTC 1 cut(s) 60
MboI GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
MfeI CAATTG 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 803, 1236
MluCI AATT 7 cut(s) 63, 331, 669, 694, 703, 872, 902
MlyI GAGTC 3 cut(s) 91, 271, 1157
MmeI TCCRAC 2 cut(s) 399, 1234
MroXI GAANNNNTTC 1 cut(s) 1278
MseI TTAA 2 cut(s) 888, 1140
MslI CAYNNNNRTG 4 cut(s) 309, 570, 835, 1182
MspI CCGG 6 cut(s) 298, 357, 677, 911, 1129, 1283
MspR9I CCNGG 4 cut(s) 299, 678, 911, 1105
MunI CAATTG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 1105
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 2 cut(s) 128, 1097
NciI CCSGG 3 cut(s) 299, 678, 911
NdeII GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
NlaIII CATG 9 cut(s) 308, 339, 391, 550, 767, 840, 948, 1014, 1181
NlaIV GGNNCC 2 cut(s) 801, 1133
NmeAIII GCCGAG 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 563
NsbI TGCGCA 1 cut(s) 878
NspI RCATGY 1 cut(s) 550
OliI CACNNNNGTG 1 cut(s) 570
PagI TCATGA 2 cut(s) 304, 1177
PciSI GCTCTTC 2 cut(s) 346, 1269
PcsI WCGNNNNNNNCGW 4 cut(s) 29, 568, 1306, 1315
PdmI GAANNNNTTC 1 cut(s) 1278
PfeI GAWTC 5 cut(s) 16, 347, 383, 451, 1315
Pfl23II CGTACG 1 cut(s) 1310
PflFI GACNNNGTC 1 cut(s) 1147
PkrI GCNGC 6 cut(s) 124, 184, 405, 408, 1102, 1204
PleI GAGTC 3 cut(s) 90, 270, 1156
PmaCI CACGTG 1 cut(s) 1301
PmlI CACGTG 1 cut(s) 1301
PpsI GAGTC 3 cut(s) 90, 270, 1156
Ppu21I YACGTR 1 cut(s) 1301
PshAI GACNNNNGTC 2 cut(s) 461, 561
Psp124BI GAGCTC 1 cut(s) 1236
Psp6I CCWGG 1 cut(s) 1103
PspCI CACGTG 1 cut(s) 1301
PspGI CCWGG 1 cut(s) 1103
PspLI CGTACG 1 cut(s) 1310
PspN4I GGNNCC 2 cut(s) 801, 1133
PspOMI GGGCCC 1 cut(s) 799
PspPI GGNCC 5 cut(s) 295, 456, 799, 800, 898
PsyI GACNNNGTC 1 cut(s) 1147
RsaI GTAC 4 cut(s) 745, 965, 1289, 1312
RsaNI GTAC 4 cut(s) 744, 964, 1288, 1311
RseI CAYNNNNRTG 4 cut(s) 309, 570, 835, 1182
SacI GAGCTC 1 cut(s) 1236
SalI GTCGAC 1 cut(s) 939
SapI GCTCTTC 2 cut(s) 346, 1269
SaqAI TTAA 2 cut(s) 888, 1140
SatI GCNGC 6 cut(s) 123, 183, 404, 407, 1101, 1203
Sau3AI GATC 8 cut(s) 216, 301, 580, 609, 1025, 1053, 1222, 1237
Sau96I GGNCC 5 cut(s) 295, 456, 799, 800, 898
SchI GAGTC 3 cut(s) 91, 271, 1157
ScrFI CCNGG 4 cut(s) 299, 678, 911, 1105
SduI GDGCHC 2 cut(s) 803, 1236
SfaNI GCATC 2 cut(s) 967, 1189
SinI GGWCC 3 cut(s) 295, 456, 898
SmiMI CAYNNNNRTG 4 cut(s) 309, 570, 835, 1182
Sse9I AATT 7 cut(s) 63, 331, 669, 694, 703, 872, 902
SspMI CTAG 4 cut(s) 6, 519, 1206, 1244
SstI GAGCTC 1 cut(s) 1236
StyD4I CCNGG 4 cut(s) 297, 676, 909, 1103
TaaI ACNGT 3 cut(s) 569, 834, 1000
TaiI ACGT 2 cut(s) 809, 1303
TaqI TCGA 9 cut(s) 219, 265, 350, 940, 1024, 1066, 1214, 1230, 1236
TaqII GACCGA 3 cut(s) 462, 886, 1010
TasI AATT 7 cut(s) 63, 331, 669, 694, 703, 872, 902
TauI GCSGC 3 cut(s) 125, 185, 406
TfiI GAWTC 5 cut(s) 16, 347, 383, 451, 1315
Tru1I TTAA 2 cut(s) 888, 1140
Tru9I TTAA 2 cut(s) 888, 1140
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 3 cut(s) 406, 1100, 1202
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 4 cut(s) 63, 324, 780, 780
TspGWI ACGGA 1 cut(s) 1160
Tth111I GACNNNGTC 1 cut(s) 1147
VpaK11BI GGWCC 3 cut(s) 295, 456, 898
XapI RAATTY 1 cut(s) 694
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 1278
XspI CTAG 4 cut(s) 6, 519, 1206, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.