Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

4831058 .. 4832329

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTTCACAGCTCTATGTTCTCGAACTCCGCTTCGAGTTCCTCGGAGTCGAGCTCGGGAGCTGCATTTTCGTCTTCCGAAACAGATTCTCAGAGCTGACAGATCAAGAATAAAGCCGAAGGCGGTCGAGGGGAGGTTCGTGCGGTTCGAGGAGAAGGAAAAGAGTGAGAGTAGCGGAGGAGGCGGGTTTTCAAAGACAAAGCTCCGAGCTTTGAAAATCTATGGAGAACTGAAGAAAGTGAAGCAACCTATTTCCCCCGGCGGGCGTATTGCGAGCTTCATCAATTCAATTTTTAATTCCGGGAACGTCAAAAAGGCAAAACTGTGTCATGTTGGAGCTGTGGAAGATGTGAGCATCACAGAGCATGTGTCGAATTCGAAATCATCTTGTTCTTCTTCTTCTGCGCCGGCTTCTACTTTCTCAAGGTCTTGCTTGAGCAAACCGTCTTCAAGAGCGAAAAAATCGAGCAATGGCATGAAAAGGACGGTTAGATTTTACCCGATGAGAATGATTCTCGGTGAGGATTCTCAGCTTTCAAGCGACCACAAATGTGTGTTTGAAGAAGACCCAAGCTTGATGCCAAAACCCTCTTTTCAAAAATATGCAAGGTCTTGTCCTGCTAATTATGATACGCTGATCCAATCGGGCGAGAGTCGAACGCAAGACCTGGTTACATTCAATTGTACCACAAAATCAACGAGTTACAGGAAGACTTGTGCGGTTAGTCCAACAAGTTATAGGACGACGGGCGCGGTTGGTCCAACTTTTGTGAGAAGTTTTTGTGACAATGCAGATGATGAAGGAAGTGATCATGATGCCGCGAGTTGTTCAAGTTCTTTTCAGGTGTATGAGACTACTAATTTCAGAACCAATCAAGCTATTGCCCAAGGGTTCTTCAAATTAATTAAAGTTTTACGGTTTAGATTCATACTTCGAACGACCTTTCTGCCAGAAAATGTGTTTAGGTTTACAATTTTACAACATAAACATTATCGTGATAAAATAAAATTTGATGAGAAAACAATACTCAAGCTACATATAAGCGCTTTCTTGCCGATGTACATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

40.1

Weight (kDa)

9.95

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	752, 821
AciI	CCGC	9 cut(s)	29, 122, 142, 174, 183, 261, 719, 752, 819
AclWI	GGATC	1 cut(s)	631
AcsI	RAATTY	2 cut(s)	373, 1007
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	2 cut(s)	685, 1061
AfeI	AGCGCT	1 cut(s)	1045
AfiI	CCNNNNNNNGG	1 cut(s)	261
AjnI	CCWGG	1 cut(s)	666
AleI	CACNNNNGTG	1 cut(s)	549
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	845
AlwI	GGATC	1 cut(s)	631
Ama87I	CYCGRG	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	1045
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	373, 1007
AseI	ATTAAT	1 cut(s)	902
AspLEI	GCGC	3 cut(s)	406, 752, 1046
AspS9I	GGNCC	1 cut(s)	758
AsuC2I	CCSGG	2 cut(s)	258, 301
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	2 cut(s)	377, 934
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	55
BbsI	GAAGAC	4 cut(s)	65, 438, 570, 716
Bbv12I	GWGCWC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	48
BcgI	CGANNNNNNTGC	2 cut(s)	928, 962
BciT130I	CCWGG	1 cut(s)	668
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	2 cut(s)	258, 301
BcoDI	GTCTC	1 cut(s)	845
BfoI	RGCGCY	1 cut(s)	1047
BisI	GCNGC	2 cut(s)	62, 819
BlsI	GCNGC	2 cut(s)	63, 820
Bme1390I	CCNGG	3 cut(s)	258, 301, 668
Bme18I	GGWCC	1 cut(s)	758
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	758
BmrFI	CCNGG	3 cut(s)	258, 301, 668
BmsI	GCATC	3 cut(s)	363, 567, 805
BpiI	GAAGAC	4 cut(s)	65, 438, 570, 716
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu14I	TTCGAA	2 cut(s)	377, 934
BpuEI	CTTGAG	3 cut(s)	406, 454, 1013
BpuMI	CCSGG	2 cut(s)	258, 301
BsaJI	CCNNGG	3 cut(s)	41, 256, 886
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	3 cut(s)	41, 256, 886
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	103, 542
BseRI	GAGGAG	2 cut(s)	164, 192
BseXI	GCAGC	1 cut(s)	48
Bsh1236I	CGCG	2 cut(s)	752, 821
Bsh1285I	CGRYCG	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	3 cut(s)	258, 300, 407
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	845
BsoBI	CYCGRG	1 cut(s)	54
Bsp119I	TTCGAA	2 cut(s)	377, 934
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp1407I	TGTACA	1 cut(s)	1059
Bsp143I	GATC	3 cut(s)	101, 636, 808
BspACI	CCGC	9 cut(s)	29, 122, 142, 174, 183, 261, 719, 752, 819
BspCNI	CTCAG	2 cut(s)	102, 541
BspFNI	CGCG	2 cut(s)	752, 821
BspHI	TCATGA	1 cut(s)	811
BspPI	GGATC	1 cut(s)	631
BspT104I	TTCGAA	2 cut(s)	377, 934
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	1059
BssAI	RCCGGY	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	41, 256, 886
BssMI	GATC	3 cut(s)	101, 636, 808
BssT1I	CCWWGG	1 cut(s)	886
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	4 cut(s)	324, 444, 487, 918
BstAUI	TGTACA	1 cut(s)	1059
BstBI	TTCGAA	2 cut(s)	377, 934
BstC8I	GCNNGC	3 cut(s)	263, 274, 408
BstDEI	CTNAG	2 cut(s)	89, 528
BstFNI	CGCG	2 cut(s)	752, 821
BstH2I	RGCGCY	1 cut(s)	1047
BstHHI	GCGC	3 cut(s)	406, 752, 1046
BstKTI	GATC	3 cut(s)	104, 639, 811
BstMAI	GTCTC	1 cut(s)	845
BstMBI	GATC	3 cut(s)	101, 636, 808
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	256, 299, 666
BstUI	CGCG	2 cut(s)	752, 821
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	4 cut(s)	65, 438, 570, 716
Cac8I	GCNNGC	3 cut(s)	263, 274, 408
CciI	TCATGA	1 cut(s)	811
CfoI	GCGC	3 cut(s)	406, 752, 1046
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	758
CsiI	ACCWGGT	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	684, 1060
CviAII	CATG	5 cut(s)	329, 365, 475, 812, 1063
CviQI	GTAC	2 cut(s)	684, 1060
DdeI	CTNAG	2 cut(s)	89, 528
DpnI	GATC	3 cut(s)	103, 638, 810
DpnII	GATC	3 cut(s)	101, 636, 808
Ecl136II	GAGCTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	886
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	758
Eco47III	AGCGCT	1 cut(s)	1045
Eco53kI	GAGCTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	886
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	886
FaeI	CATG	5 cut(s)	332, 368, 478, 815, 1066
FatI	CATG	5 cut(s)	328, 364, 474, 811, 1062
FauI	CCCGC	2 cut(s)	176, 254
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	2 cut(s)	62, 819
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	62, 819
GlaI	GCGC	3 cut(s)	405, 751, 1045
GluI	GCNGC	2 cut(s)	62, 819
HaeII	RGCGCY	1 cut(s)	1047
HapII	CCGG	3 cut(s)	258, 300, 407
HhaI	GCGC	3 cut(s)	406, 752, 1046
Hin1II	CATG	5 cut(s)	332, 368, 478, 815, 1066
Hin6I	GCGC	3 cut(s)	404, 750, 1044
HinP1I	GCGC	3 cut(s)	404, 750, 1044
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	6 cut(s)	46, 85, 511, 524, 652, 924
HpaII	CCGG	3 cut(s)	258, 300, 407
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	6, 969
Hpy188I	TCNGA	5 cut(s)	45, 78, 92, 206, 866
Hpy188III	TCNNGA	6 cut(s)	21, 56, 105, 450, 812, 995
Hpy8I	GTNNAC	2 cut(s)	6, 969
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	3 cut(s)	112, 148, 794
HpyCH4III	ACNGT	4 cut(s)	324, 444, 487, 918
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	64, 605, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	2 cut(s)	89, 528
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	5 cut(s)	332, 368, 478, 815, 1066
HspAI	GCGC	3 cut(s)	404, 750, 1044
KroI	GCCGGC	1 cut(s)	406
KroNI	GCCGGC	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	101, 636, 808
LmnI	GCTCC	3 cut(s)	58, 207, 335
LpnPI	CCDG	9 cut(s)	271, 313, 420, 630, 653, 680, 691, 827, 963
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	3 cut(s)	363, 567, 805
MabI	ACCWGGT	1 cut(s)	666
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	3 cut(s)	670, 701, 782
MalI	GATC	3 cut(s)	103, 638, 810
MboI	GATC	3 cut(s)	101, 636, 808
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	55, 661
MmeI	TCCRAC	3 cut(s)	313, 752, 785
MnlI	CCTC	8 cut(s)	51, 121, 126, 142, 170, 173, 514, 598
MroNI	GCCGGC	1 cut(s)	406
MseI	TTAA	3 cut(s)	294, 902, 906
MslI	CAYNNNNRTG	2 cut(s)	549, 993
MspI	CCGG	3 cut(s)	258, 300, 407
MspR9I	CCNGG	3 cut(s)	258, 301, 668
MunI	CAATTG	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	2 cut(s)	752, 821
MwoI	GCNNNNNNNGC	1 cut(s)	180
NaeI	GCCGGC	1 cut(s)	408
NciI	CCSGG	2 cut(s)	258, 301
NdeII	GATC	3 cut(s)	101, 636, 808
NgoMIV	GCCGGC	1 cut(s)	406
NlaIII	CATG	5 cut(s)	332, 368, 478, 815, 1066
NmuCI	GTSAC	1 cut(s)	782
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	2 cut(s)	377, 934
OliI	CACNNNNGTG	1 cut(s)	549
PacI	TTAATTAA	1 cut(s)	906
PagI	TCATGA	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdiI	GCCGGC	1 cut(s)	408
PfeI	GAWTC	4 cut(s)	85, 511, 524, 924
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	63, 820
PleI	GAGTC	2 cut(s)	54, 660
PpsI	GAGTC	2 cut(s)	54, 660
PshBI	ATTAAT	1 cut(s)	902
Psp124BI	GAGCTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	758
RsaI	GTAC	2 cut(s)	685, 1061
RsaNI	GTAC	2 cut(s)	684, 1060
RseI	CAYNNNNRTG	2 cut(s)	549, 993
SacI	GAGCTC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	294, 902, 906
SatI	GCNGC	2 cut(s)	62, 819
Sau3AI	GATC	3 cut(s)	101, 636, 808
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	2 cut(s)	55, 661
ScrFI	CCNGG	3 cut(s)	258, 301, 668
SduI	GDGCHC	1 cut(s)	55
SexAI	ACCWGGT	1 cut(s)	666
SfaNI	GCATC	3 cut(s)	363, 567, 805
SfuI	TTCGAA	2 cut(s)	377, 934
SinI	GGWCC	1 cut(s)	758
SmiMI	CAYNNNNRTG	2 cut(s)	549, 993
SmlI	CTYRAG	3 cut(s)	421, 433, 1028
SmoI	CTYRAG	3 cut(s)	421, 433, 1028
SsiI	CCGC	9 cut(s)	29, 122, 142, 174, 183, 261, 719, 752, 819
SstI	GAGCTC	1 cut(s)	55
StyD4I	CCNGG	3 cut(s)	256, 299, 666
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	4 cut(s)	324, 444, 487, 918
TaiI	ACGT	1 cut(s)	309
TatI	WGTACW	1 cut(s)	1059
TauI	GCSGC	1 cut(s)	821
TfiI	GAWTC	4 cut(s)	85, 511, 524, 924
Tru1I	TTAA	3 cut(s)	294, 902, 906
Tru9I	TTAA	3 cut(s)	294, 902, 906
TseFI	GTSAC	1 cut(s)	782
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	782
TspDTI	ATGAA	4 cut(s)	268, 491, 813, 916
VpaK11BI	GGWCC	1 cut(s)	758
VspI	ATTAAT	1 cut(s)	902
XapI	RAATTY	2 cut(s)	373, 1007
XceI	RCATGY	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.