Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Reverse (-)

53384314 .. 53387646

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0389600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3210 bp

ATGGAGGATTCTTATTCTCTAGGGCGTTGTGAAACTGAAACCCTATTCAGGCTTTACGATGTGCGTGTCGAGATCGGAACCCTAGTTCGCCAAGACCAAGATGAGTTCTTGGTTGCTTGGGAAGGACCCCCTAAAGGAGTTTCCTTTACTGTGGACCCTTCTACTAGGACTTGCAGGTTTTGCTTGACACAAAACACTGCCTTTTCGTATGGTGGTAGGAGAAACAAGCGTGTGAGGACGTACTGTGATTATAAAGTGGAGTTTTTGGTTAGGGACATCAGTGAGTTCAAGCATTACGAAACCTTGGAGATGGATTTTGTGATTCTGTTGAGGCTGGCTTGGTCGCCATGTGTTTCGTGCAGGTCTCCTCATGATGAGAGTTGGATCAGGACTACTGATTTCACTGCAAATGGCGCCATTGGAAGGAGTAATTTCTACAAGTTTTCGGTCCCTCGGTACTATGGGGCCGAGTGGAACAAGGCCATTGATTATCTTAGACAGCTGAGGGTGCTGGAGTTAGATATAAAATGGCCACTTGGGATTCAGAAGGAGCCCTTTTTCGGGATGCCTAGTTCCGATCCTTTCTACTCTATTGGTCACAAACATGCAATTTGCTTCGAGATTATCTTCTTGGTTAATGCGGTAATGCACAAGGGAATTCTCAATCAGCATCAGTTGTCAGACAGCTTCTTCAATTTACTGAGAAGCCAATCAAAGGATGTCAATGTGGCTGCATTGAACTACTTATATTCGTGCAGCCGGCGCCCGGTGTTAGATGCCTGTCAGAGGCTGAGAGCTGTGCAAGACTGGTTTGTGGCAAATCCCGAGCTTTTCGAGAGTCCTAAAAGGTTGGATGATATTGCTCATGTCAGGAGGTTGGTCATTACCCCAACTAAAGCCTATTGTATTCCACCAGAGGCTCAACTGTCAAATAGGGTTCTTAGAAAATACAAACAAATAGGTGATCGGTTTCTAAGGGTTACTTTTATGGATGAAGGAATGCAGACTATTTATTCCAATGCTATGAATTCTTATGGGGAAAAATCCTGCCCTCAGAGAACAAAAGTATTTGGAAGGGTTGAGGCCATTCTGAAAAATGGATTTGACTTATGCGGCCGAAAGTACTCTTTCTTGGCCTTCTCATCCAATCAATTGAGGGAGCGCTCGGCCTGGTTTTTTGCTGAATGCAAGAGCATTACGATCCACGATATCCAAACTTGGATGGGGAAGTTCACCAACAGAAATGTTGCAAAATATTCTGCTAGAATGGGTCAATGCTTTTCGTCTACATATGCAACGGTAGAAGTTCCATCAAGCAAGGTTAATCCTAAGCTTCGCGATATTGAGAGGAATGGATACAATTTTTCAGATGGGATTGGTAAGATTTCCCCTGCTCTTGTGATGGAAGTTGCAAAGAAACTGAAATTGGACTGCAGTGATCCTCCTTGTGCATACCAAATTAGATATGCTGGCTTTAAAGGGGTTATTGCTTGTTGGCCAAGCGAAGGGGATAGATTCCAGCTCTCTTTAAGGCCTAGCATGAACAAGTTCGAGTCGCACCATACTACATTGGAAATTTGTTCTTGGACTAGGCTGCAGCCGGGGTTTTTAAACAGGCAGATTATAACATTGCTTTCAACACTGCATGTTCCAGATATGGTATTCTGGAGAATGCAGCAGCAAATGGTTTCCAACTTAAAACTGATGCTCACAGACATGGATGCCGCATTTGATGTTGTCACTGCCTCATGCGGTGAACAAGGAAATGCGGCAGCTATAATGCTGAGTGCAGGTTTTAATCCACAGACTGAACCTCATTTGCGCGGCATGTTAACATGTATACAAGCCGCGCAGCTTTGGGGCCTCCGAGAAAAGTCTAGGATTTTTGTTCCCTCGGGAAGATGGCTTATGGGATGTCTAGATGAGCTAGGGGTACTTGAGCAAGGTCAGTGCTTTATCCAAGTGTCTAACCCATCACTTGAAAACTGTTTTGCAAAGCATGGCTCTAGGTTTTGTCCGATAGAGAAAAACCTACAAGTAATAAAAGGATTAGTTGTGGTAGCAAAGAATCCATGTCTTCATCCAGGTGATATAAGGATTCTTGAAGCAGTTGATGCCCCAGGTTTACACCACTTACATGATTGCCTTGTTTTCCCTCAGAAGGGTTATAGGCCACACTCGAACGAAGCTTCTGGAAGTGACCTGGATGGGGACCTGTACTTTGTCACATGGGATGAAAATCTTATTCCCCCTAGTAAGAAGAGCGAGAAACCTATGGAGTATGATGCTGCAGAAGCCAAAACTTTGGACCGTCCTGTCACTAACCAGGATATTATAGAGTTTTTTGTGAGAAACATGGCGAATGAGAACCTGGGGGCGATATGCAATGCACATGTAGTTCATGCTGACATCAGTGAACATGGGGCTTCGGATGACAACTGCATCAAACTAGCGAAGCTAGCAGCAATAGCAGTTGATCTACCAAAAACTGGGAAGATTGTTCCAATGCCATCGTACCTAAAACCAGAGTTGTACCCAGATTTCATGGGGAAAGAGGGCTTCAAGTCTTACATGTCAAGTAAAATCTTGGGGGTACTCTATCGCCAGATCACAGATGCCTATGATGAAGATCTGGCAACCTCTTTTAACCTAGGTTATGGTCCAACTGACATCCCATATGATATTGATTTGGAGGTTCCAGGAGCGCACAATATCATAGTAGAAGCATTGGAGAGAAAGCGCTCTTATGATTTTCAGCTGAAGGGTCTAATGGGACAATATAATGTTGTGAGGGAAGAAGAGATTGTCACTGGGTATGTTTGGTCAATGCCGAAGAGCAGGAAGCGAGGGGAGCTCCAGGAGCAGCTGAAACAGTCTTACAGTGCTCTGAAGAAAGAGTTCAGGCAATGTTTTGAGAGAATTGATGGAGATTTCAAGTCGCTGAGTAATGATCAGAAGAATTTTTTGTATGAGCAGAAGGCATCAGCTTGGTACATGGTAACTTATCATCCTAAGTTGGTGAAAGAATCACTCTATTTGCAAGGGCCAGATGGTCCTGGAGATGTGCCGATGTTGAGCTTTGCCTGGATTGCAACTGACTACCTTGCTCGGATCAAGATCAAACGTTGTGGAGTGGGAATGATCGACTCTAGAAAGCCAATCAACTCTTTGAGAAGGTACCTTGCGGATAGGATACGGACCGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007623 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0040008 GO:0042221 GO:0044464 GO:0048511 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1069

Amino Acids

122.03

Weight (kDa)

8.43

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RDR6_2nd	PF24577	17 - 170	8.4e-50	RNA-dependent RNA polymerase 6 second domain
RdRP_helical	PF26252	196 - 277	1.2e-15	RNA dependent RNA polymerase, helical domain
RdRP	PF05183	295 - 870	1.3e-189	RNA dependent RNA polymerase
RdRP_head	PF26253	892 - 1042	2.9e-37	RdRP, head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	252, 1625
AasI	GACNNNNNNGTC	1 cut(s)	2315
Acc36I	ACCTGC	3 cut(s)	165, 351, 1781
Acc65I	GGTACC	1 cut(s)	3177
AccB1I	GGYRCC	3 cut(s)	413, 762, 3177
AccB7I	CCANNNNNTGG	1 cut(s)	2489
AccI	GTMKAC	2 cut(s)	1286, 1840
AccII	CGCG	3 cut(s)	1338, 1824, 1850
AciI	CCGC	9 cut(s)	641, 1113, 1725, 1752, 1769, 1824, 1848, 3185, 3201
AclI	AACGTT	1 cut(s)	3124
AclWI	GGATC	5 cut(s)	392, 572, 1195, 1433, 3119
AcoI	YGGCCR	3 cut(s)	530, 1114, 1496
AcsI	RAATTY	4 cut(s)	657, 1027, 1575, 2959
AcuI	CTGAAG	2 cut(s)	2780, 2909
AcyI	GRCGYC	2 cut(s)	414, 763
AfeI	AGCGCT	2 cut(s)	1163, 2741
AflIII	ACRYGT	3 cut(s)	1835, 2392, 2571
AgsI	TTSAA	8 cut(s)	289, 694, 739, 1638, 1982, 2105, 2563, 2935
AjuI	GAANNNNNNNTTGG	2 cut(s)	1409, 1441
AloI	GAACNNNNNNTCC	4 cut(s)	69, 101, 556, 588
Alw21I	GWGCWC	2 cut(s)	2856, 2887
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	5 cut(s)	392, 572, 1195, 1433, 3119
AlwNI	CAGNNNCTG	1 cut(s)	790
Ama87I	CYCGRG	2 cut(s)	824, 1894
Aor51HI	AGCGCT	2 cut(s)	1163, 2741
ApoI	RAATTY	4 cut(s)	657, 1027, 1575, 2959
ArsI	GACNNNNNNTTYG	2 cut(s)	2204, 2236
Asp700I	GAANNNNTTC	2 cut(s)	1547, 2897
Asp718I	GGTACC	1 cut(s)	3177
AspA2I	CCTAGG	1 cut(s)	2650
AspLEI	GCGC	7 cut(s)	416, 765, 1164, 1824, 1852, 2707, 2742
AsuC2I	CCSGG	2 cut(s)	767, 1602
AsuHPI	GGTGA	5 cut(s)	974, 1225, 1766, 2099, 3031
AsuNHI	GCTAGC	1 cut(s)	2458
AvaI	CYCGRG	2 cut(s)	824, 1894
AvaII	GGWCC	8 cut(s)	125, 154, 448, 2212, 2308, 2660, 3053, 3198
AvrII	CCTAGG	1 cut(s)	2650
BalI	TGGCCA	2 cut(s)	532, 1498
BanI	GGYRCC	3 cut(s)	413, 762, 3177
BanII	GRGCYC	2 cut(s)	555, 2856
BbsI	GAAGAC	1 cut(s)	2069
Bbv12I	GWGCWC	2 cut(s)	2856, 2887
BbvCI	CCTCAGC	1 cut(s)	503
BciVI	GTATCC	2 cut(s)	1349, 3186
BclI	TGATCA	1 cut(s)	2950
BcnI	CCSGG	2 cut(s)	767, 1602
BcoDI	GTCTC	1 cut(s)	369
BfmI	CTRYAG	3 cut(s)	1432, 1595, 2289
BfoI	RGCGCY	4 cut(s)	417, 766, 1165, 2743
BfuAI	ACCTGC	3 cut(s)	165, 351, 1781
BfuI	GTATCC	2 cut(s)	1349, 3186
BglII	AGATCT	1 cut(s)	2629
BlnI	CCTAGG	1 cut(s)	2650
BmcAI	AGTACT	1 cut(s)	1124
Bme18I	GGWCC	8 cut(s)	125, 154, 448, 2212, 2308, 2660, 3053, 3198
BmeT110I	CYCGRG	2 cut(s)	824, 1894
BmrI	ACTGGG	2 cut(s)	2499, 2820
BmtI	GCTAGC	1 cut(s)	2462
BmuI	ACTGGG	2 cut(s)	2499, 2820
BpiI	GAAGAC	1 cut(s)	2069
BplI	GAGNNNNNCTC	2 cut(s)	2838, 2870
BpmI	CTGGAG	4 cut(s)	533, 1687, 2840, 3078
Bpu10I	CCTNAGC	2 cut(s)	503, 1329
BpuEI	CTTGAG	1 cut(s)	1958
BpuMI	CCSGG	2 cut(s)	767, 1602
BsaBI	GATNNNNATC	3 cut(s)	2238, 2628, 3116
BsaHI	GRCGYC	2 cut(s)	414, 763
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	7 cut(s)	303, 452, 1601, 1893, 2119, 2371, 2650
Bse118I	RCCGGY	1 cut(s)	759
Bse1I	ACTGG	3 cut(s)	812, 2494, 2815
Bse3DI	GCAATG	3 cut(s)	1628, 2392, 2912
Bse8I	GATNNNNATC	3 cut(s)	2238, 2628, 3116
BseDI	CCNNGG	7 cut(s)	303, 452, 1601, 1893, 2119, 2371, 2650
BseJI	GATNNNNATC	3 cut(s)	2238, 2628, 3116
BseMI	GCAATG	3 cut(s)	1628, 2392, 2912
BseMII	CTCAG	7 cut(s)	494, 692, 782, 1067, 1775, 2171, 2933
BseNI	ACTGG	3 cut(s)	812, 2494, 2815
BseRI	GAGGAG	1 cut(s)	357
BseX3I	CGGCCG	1 cut(s)	1114
BsgI	GTGCAG	3 cut(s)	379, 775, 1809
Bsh1236I	CGCG	3 cut(s)	1338, 1824, 1850
Bsh1285I	CGRYCG	1 cut(s)	1117
BshNI	GGYRCC	3 cut(s)	413, 762, 3177
BsiEI	CGRYCG	1 cut(s)	1117
BsiHKAI	GWGCWC	2 cut(s)	2856, 2887
BsiHKCI	CYCGRG	2 cut(s)	824, 1894
BsiSI	CCGG	3 cut(s)	760, 767, 1601
BslFI	GGGAC	4 cut(s)	287, 434, 2225, 2787
BsmAI	GTCTC	1 cut(s)	369
BsmFI	GGGAC	4 cut(s)	287, 434, 2225, 2787
BsmI	GAATGC	3 cut(s)	1005, 1190, 1677
Bso31I	GGTCTC	1 cut(s)	369
BsoBI	CYCGRG	2 cut(s)	824, 1894
Bsp1286I	GDGCHC	3 cut(s)	555, 2856, 2887
Bsp68I	TCGCGA	1 cut(s)	1338
BspACI	CCGC	9 cut(s)	641, 1113, 1725, 1752, 1769, 1824, 1848, 3185, 3201
BspCNI	CTCAG	7 cut(s)	495, 693, 783, 1066, 1776, 2170, 2934
BspFNI	CGCG	3 cut(s)	1338, 1824, 1850
BspHI	TCATGA	1 cut(s)	370
BspMAI	CTGCAG	3 cut(s)	1436, 1599, 2293
BspMI	ACCTGC	3 cut(s)	165, 351, 1781
BspOI	GCTAGC	1 cut(s)	2462
BspPI	GGATC	5 cut(s)	392, 572, 1195, 1433, 3119
BspQI	GCTCTTC	2 cut(s)	2255, 2828
BspT107I	GGYRCC	3 cut(s)	413, 762, 3177
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	3 cut(s)	1628, 2392, 2912
BsrFI	RCCGGY	1 cut(s)	759
BsrI	ACTGG	3 cut(s)	812, 2494, 2815
BssAI	RCCGGY	1 cut(s)	759
BssECI	CCNNGG	7 cut(s)	303, 452, 1601, 1893, 2119, 2371, 2650
BssNAI	GTATAC	1 cut(s)	1841
BssNI	GRCGYC	2 cut(s)	414, 763
BssT1I	CCWWGG	2 cut(s)	303, 2650
Bst1107I	GTATAC	1 cut(s)	1841
Bst4CI	ACNGT	8 cut(s)	151, 245, 927, 1300, 1988, 2312, 2874, 2882
Bst6I	CTCTTC	3 cut(s)	2255, 2793, 2828
BstACI	GRCGYC	2 cut(s)	414, 763
BstAPI	GCANNNNNTGC	2 cut(s)	180, 2114
BstC8I	GCNNGC	4 cut(s)	336, 761, 1471, 2460
BstENI	CCTNNNNNAGG	1 cut(s)	784
BstFNI	CGCG	3 cut(s)	1338, 1824, 1850
BstH2I	RGCGCY	4 cut(s)	417, 766, 1165, 2743
BstHHI	GCGC	7 cut(s)	416, 765, 1164, 1824, 1852, 2707, 2742
BstMAI	GTCTC	1 cut(s)	369
BstMCI	CGRYCG	1 cut(s)	1117
BstNSI	RCATGY	6 cut(s)	608, 1649, 1831, 1839, 2396, 2575
BstSFI	CTRYAG	3 cut(s)	1432, 1595, 2289
BstUI	CGCG	3 cut(s)	1338, 1824, 1850
BstV2I	GAAGAC	1 cut(s)	2069
BstX2I	RGATCY	1 cut(s)	2629
BstXI	CCANNNNNNTGG	1 cut(s)	2305
BstYI	RGATCY	1 cut(s)	2629
BstZ17I	GTATAC	1 cut(s)	1841
BstZI	CGGCCG	1 cut(s)	1114
BsuI	GTATCC	2 cut(s)	1349, 3186
BtsI	GCAGTG	5 cut(s)	195, 402, 1441, 1640, 1740
BtuMI	TCGCGA	1 cut(s)	1338
BveI	ACCTGC	3 cut(s)	165, 351, 1781
Cac8I	GCNNGC	4 cut(s)	336, 761, 1471, 2460
CaiI	CAGNNNCTG	1 cut(s)	790
CciI	TCATGA	1 cut(s)	370
CfoI	GCGC	7 cut(s)	416, 765, 1164, 1824, 1852, 2707, 2742
Cfr10I	RCCGGY	1 cut(s)	759
CpoI	CGGWCCG	1 cut(s)	3198
CspCI	CAANNNNNGTGG	2 cut(s)	3109, 3144
CspI	CGGWCCG	1 cut(s)	3198
DinI	GGCGCC	2 cut(s)	415, 764
DraI	TTTAAA	2 cut(s)	1477, 1611
DrdI	GACNNNNNNGTC	1 cut(s)	2315
DseDI	GACNNNNNNGTC	1 cut(s)	2315
EaeI	YGGCCR	3 cut(s)	530, 1114, 1496
EagI	CGGCCG	1 cut(s)	1114
Eam1104I	CTCTTC	3 cut(s)	2255, 2793, 2828
EarI	CTCTTC	3 cut(s)	2255, 2793, 2828
Ecl136II	GAGCTC	1 cut(s)	2854
EclXI	CGGCCG	1 cut(s)	1114
Eco130I	CCWWGG	2 cut(s)	303, 2650
Eco147I	AGGCCT	1 cut(s)	1534
Eco24I	GRGCYC	2 cut(s)	555, 2856
Eco31I	GGTCTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	1210
Eco47I	GGWCC	8 cut(s)	125, 154, 448, 2212, 2308, 2660, 3053, 3198
Eco47III	AGCGCT	2 cut(s)	1163, 2741
Eco52I	CGGCCG	1 cut(s)	1114
Eco53kI	GAGCTC	1 cut(s)	2854
Eco57I	CTGAAG	2 cut(s)	2780, 2909
Eco88I	CYCGRG	2 cut(s)	824, 1894
EcoICRI	GAGCTC	1 cut(s)	2854
EcoNI	CCTNNNNNAGG	1 cut(s)	784
EcoO109I	RGGNCCY	3 cut(s)	125, 1861, 2212
EcoRI	GAATTC	2 cut(s)	657, 1027
EcoRV	GATATC	1 cut(s)	1210
EcoT14I	CCWWGG	2 cut(s)	303, 2650
EcoT38I	GRGCYC	2 cut(s)	555, 2856
EgeI	GGCGCC	2 cut(s)	415, 764
EheI	GGCGCC	2 cut(s)	415, 764
ErhI	CCWWGG	2 cut(s)	303, 2650
FalI	AAGNNNNNCTT	4 cut(s)	539, 571, 967, 999
FaqI	GGGAC	4 cut(s)	287, 434, 2225, 2787
FauNDI	CATATG	2 cut(s)	1291, 2677
FbaI	TGATCA	1 cut(s)	2950
FblI	GTMKAC	2 cut(s)	1286, 1840
FriOI	GRGCYC	2 cut(s)	555, 2856
GlaI	GCGC	7 cut(s)	415, 764, 1163, 1823, 1851, 2706, 2741
GsuI	CTGGAG	4 cut(s)	533, 1687, 2840, 3078
HaeII	RGCGCY	4 cut(s)	417, 766, 1165, 2743
HapII	CCGG	3 cut(s)	760, 767, 1601
HhaI	GCGC	7 cut(s)	416, 765, 1164, 1824, 1852, 2707, 2742
Hin1I	GRCGYC	2 cut(s)	414, 763
Hin6I	GCGC	7 cut(s)	414, 763, 1162, 1822, 1850, 2705, 2740
HinP1I	GCGC	7 cut(s)	414, 763, 1162, 1822, 1850, 2705, 2740
HincII	GTYRAC	1 cut(s)	1833
HindII	GTYRAC	1 cut(s)	1833
HindIII	AAGCTT	2 cut(s)	1331, 2187
HpaI	GTTAAC	1 cut(s)	1833
HpaII	CCGG	3 cut(s)	760, 767, 1601
HphI	GGTGA	5 cut(s)	974, 1225, 1766, 2099, 3031
Hpy166II	GTNNAC	8 cut(s)	154, 1233, 1287, 1757, 1833, 1841, 2126, 2417
Hpy8I	GTNNAC	8 cut(s)	154, 1233, 1287, 1757, 1833, 1841, 2126, 2417
HpyCH4III	ACNGT	8 cut(s)	151, 245, 927, 1300, 1988, 2312, 2874, 2882
HpyCH4IV	ACGT	2 cut(s)	239, 3124
HpySE526I	ACGT	2 cut(s)	239, 3124
Hsp92I	GRCGYC	2 cut(s)	414, 763
HspAI	GCGC	7 cut(s)	414, 763, 1162, 1822, 1850, 2705, 2740
KasI	GGCGCC	2 cut(s)	413, 762
KpnI	GGTACC	1 cut(s)	3181
KroI	GCCGGC	1 cut(s)	759
KroNI	GCCGGC	1 cut(s)	761
Ksp22I	TGATCA	1 cut(s)	2950
KspAI	GTTAAC	1 cut(s)	1833
LguI	GCTCTTC	2 cut(s)	2255, 2828
LmnI	GCTCC	6 cut(s)	550, 1159, 2702, 2851, 2859, 2860
MaeII	ACGT	2 cut(s)	239, 3124
MaeIII	GTNAC	8 cut(s)	596, 979, 1738, 2198, 2224, 2317, 2806, 2998
MfeI	CAATTG	1 cut(s)	1151
MflI	RGATCY	1 cut(s)	2629
MhlI	GDGCHC	3 cut(s)	555, 2856, 2887
MlsI	TGGCCA	2 cut(s)	532, 1498
MluNI	TGGCCA	2 cut(s)	532, 1498
Mly113I	GGCGCC	2 cut(s)	414, 763
MlyI	GAGTC	3 cut(s)	847, 1562, 3140
MmeI	TCCRAC	4 cut(s)	362, 831, 1716, 2687
Mox20I	TGGCCA	2 cut(s)	532, 1498
MroNI	GCCGGC	1 cut(s)	759
MroXI	GAANNNNTTC	2 cut(s)	1547, 2897
MscI	TGGCCA	2 cut(s)	532, 1498
MseI	TTAA	9 cut(s)	636, 1323, 1476, 1529, 1610, 1697, 1797, 1832, 2646
MslI	CAYNNNNRTG	4 cut(s)	603, 1715, 2085, 2136
Msp20I	TGGCCA	2 cut(s)	532, 1498
MspA1I	CMGCKG	3 cut(s)	502, 2758, 2866
MspI	CCGG	3 cut(s)	760, 767, 1601
MunI	CAATTG	1 cut(s)	1151
Mva1269I	GAATGC	3 cut(s)	1005, 1190, 1677
MvnI	CGCG	3 cut(s)	1338, 1824, 1850
NaeI	GCCGGC	1 cut(s)	761
NarI	GGCGCC	2 cut(s)	414, 763
NciI	CCSGG	2 cut(s)	767, 1602
NdeI	CATATG	2 cut(s)	1291, 2677
NgoMIV	GCCGGC	1 cut(s)	759
NheI	GCTAGC	1 cut(s)	2458
NmeAIII	GCCGAG	2 cut(s)	493, 1145
NmuCI	GTSAC	6 cut(s)	596, 1738, 2198, 2224, 2317, 2806
NruI	TCGCGA	1 cut(s)	1338
NspI	RCATGY	6 cut(s)	608, 1649, 1831, 1839, 2396, 2575
PagI	TCATGA	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	1534
PciI	ACATGT	3 cut(s)	1835, 2392, 2571
PciSI	GCTCTTC	2 cut(s)	2255, 2828
PctI	GAATGC	3 cut(s)	1005, 1190, 1677
PdiI	GCCGGC	1 cut(s)	761
PdmI	GAANNNNTTC	2 cut(s)	1547, 2897
PfeI	GAWTC	7 cut(s)	8, 322, 541, 1515, 2068, 2098, 3026
PflMI	CCANNNNNTGG	1 cut(s)	2489
PfoI	TCCNGGA	3 cut(s)	2698, 2856, 3055
PleI	GAGTC	3 cut(s)	846, 1561, 3140
PluTI	GGCGCC	2 cut(s)	417, 766
PpsI	GAGTC	3 cut(s)	846, 1561, 3140
PpuMI	RGGWCCY	2 cut(s)	125, 2212
PscI	ACATGT	3 cut(s)	1835, 2392, 2571
PsiI	TTATAA	2 cut(s)	252, 1625
Psp124BI	GAGCTC	1 cut(s)	2856
Psp1406I	AACGTT	1 cut(s)	3124
Psp5II	RGGWCCY	2 cut(s)	125, 2212
PspPPI	RGGWCCY	2 cut(s)	125, 2212
PstI	CTGCAG	3 cut(s)	1436, 1599, 2293
PstNI	CAGNNNCTG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	2629
PvuII	CAGCTG	3 cut(s)	502, 2758, 2866
RruI	TCGCGA	1 cut(s)	1338
RseI	CAYNNNNRTG	4 cut(s)	603, 1715, 2085, 2136
Rsr2I	CGGWCCG	1 cut(s)	3198
RsrII	CGGWCCG	1 cut(s)	3198
SacI	GAGCTC	1 cut(s)	2856
SapI	GCTCTTC	2 cut(s)	2255, 2828
SaqAI	TTAA	9 cut(s)	636, 1323, 1476, 1529, 1610, 1697, 1797, 1832, 2646
ScaI	AGTACT	1 cut(s)	1124
SchI	GAGTC	3 cut(s)	847, 1562, 3140
SduI	GDGCHC	3 cut(s)	555, 2856, 2887
SfcI	CTRYAG	3 cut(s)	1432, 1595, 2289
SfoI	GGCGCC	2 cut(s)	415, 764
SinI	GGWCC	8 cut(s)	125, 154, 448, 2212, 2308, 2660, 3053, 3198
SmiMI	CAYNNNNRTG	4 cut(s)	603, 1715, 2085, 2136
SmlI	CTYRAG	1 cut(s)	1937
SmoI	CTYRAG	1 cut(s)	1937
SseBI	AGGCCT	1 cut(s)	1534
SsiI	CCGC	9 cut(s)	641, 1113, 1725, 1752, 1769, 1824, 1848, 3185, 3201
SspDI	GGCGCC	2 cut(s)	413, 762
SspI	AATATT	1 cut(s)	1256
SstI	GAGCTC	1 cut(s)	2856
StuI	AGGCCT	1 cut(s)	1534
StyI	CCWWGG	2 cut(s)	303, 2650
TaaI	ACNGT	8 cut(s)	151, 245, 927, 1300, 1988, 2312, 2874, 2882
TaiI	ACGT	2 cut(s)	242, 3127
TaqI	TCGA	6 cut(s)	69, 618, 834, 1551, 2180, 3144
TaqII	GACCGA	1 cut(s)	436
TatI	WGTACW	2 cut(s)	1122, 2217
TauI	GCSGC	5 cut(s)	1116, 1727, 1772, 1827, 1850
TfiI	GAWTC	7 cut(s)	8, 322, 541, 1515, 2068, 2098, 3026
Tru1I	TTAA	9 cut(s)	636, 1323, 1476, 1529, 1610, 1697, 1797, 1832, 2646
Tru9I	TTAA	9 cut(s)	636, 1323, 1476, 1529, 1610, 1697, 1797, 1832, 2646
TseFI	GTSAC	6 cut(s)	596, 1738, 2198, 2224, 2317, 2806
Tsp45I	GTSAC	6 cut(s)	596, 1738, 2198, 2224, 2317, 2806
TspDTI	ATGAA	8 cut(s)	1008, 1040, 1556, 2069, 2250, 2390, 2533, 2640
Van91I	CCANNNNNTGG	1 cut(s)	2489
VpaK11BI	GGWCC	8 cut(s)	125, 154, 448, 2212, 2308, 2660, 3053, 3198
XagI	CCTNNNNNAGG	1 cut(s)	784
XapI	RAATTY	4 cut(s)	657, 1027, 1575, 2959
XbaI	TCTAGA	2 cut(s)	1918, 3149
XceI	RCATGY	6 cut(s)	608, 1649, 1831, 1839, 2396, 2575
XmaJI	CCTAGG	1 cut(s)	2650
XmiI	GTMKAC	2 cut(s)	1286, 1840
XmnI	GAANNNNTTC	2 cut(s)	1547, 2897
ZrmI	AGTACT	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.