Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

4361557 .. 4363086

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTACATGAGGGAGAGATCTTGGCTTGAAGATGAGAGGTTCGTTTCTGGAGGAGGAAGGAGGAGAAGGACTCCCTCTTTCTCTTCTTCTCTTCTTGATTCTATTTACCGTTCGATTGATGAATCCAACGGTGGAGGTGGGGATGATTCGAATAAGAAACAGAGCAAACAGAGCTGCTCTGTTTCAAAGCGTGAAGAGATTAAAGGAGGAGGCAGCGGGAAGACCAAGACCAATCTTCGCCGAGCCATGATGATCGAGAATTGGGTTGAGAGGCAAAGCGTGCATAGCTCTATGTTCACGAACTCGGCTTCGAGTTCTTCAGAGTCGAGCTCCGGAGCTGCATTTTCGTCTTCGGATCAAACAGAGTCGAGCTATAAACGACGTTCGAAACAGAGTCCGGTGAAGGCTATCTCTGTTGGCTCCGATAATATGGAGAAGACGAAAAGCGAGGGCGGAAGCGGAAGCGGAGGTGGGTTTACGAAGACGAAGCTGAGAGCTTTGAAAATCTACGGCGAGTTGAAGAAAGCCAAGCAACCCATTTCGCCGGGAGGGAAGATTGCGAGCTTCATAAACTCGATTTTCAATTCCGGGAACGTCAAGAAAGCCAAGATGTGTTATGTTGGAGCTGTGGAAGACGTGAGCACTTCAGAGCATGTAACCAAGTCCACTTACTCTTCTTCTACTACTCCGGCTTCAACTTTCTCAAGGTCATGTTTGAGCAAACCATCTTCAAGGTCCAAGAAATCCAGCAATGGCAACAAAAGGTCTGTTAGATTTTACCCTATAAGTGTGATTCTTGGTGAAGATGATTCTCAGATTTCAAGCCATAAATGTGTTTATGAACAAGATCCTAGCTTGATGCCAAAGCCCACATTTCAAAAATATGCAAGAACTTCTGGTCAAAATTTCCGGAGAAGCTTCTGTGAAGATGGTGATGATGATGAAAGTGATGCCGAGAGTTATTCAAGTTCAGATCTTTTCGAGCTTAATCTACCTGTTGGGATTGGTAGATATACAGAAGAGCTTCCAGTTTATGAAACCACTAACTTCAGAACCAATCAAGCCATTGCCAAAGGCTTGATACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

39.61

Weight (kDa)

9.44

Isoelectric Point (pI)

76.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	332, 909
AciI	CCGC	4 cut(s)	216, 453, 459, 465
AclWI	GGATC	2 cut(s)	363, 842
AcsI	RAATTY	1 cut(s)	904
AcuI	CTGAAG	3 cut(s)	303, 630, 1033
AfaI	GTAC	1 cut(s)	5
AjiI	CACGTC	1 cut(s)	637
Alw21I	GWGCWC	2 cut(s)	332, 644
AlwI	GGATC	2 cut(s)	363, 842
Aor13HI	TCCGGA	2 cut(s)	332, 909
ApeKI	GCWGC	3 cut(s)	174, 213, 338
ApoI	RAATTY	1 cut(s)	904
Asp700I	GAANNNNTTC	1 cut(s)	1023
AspS9I	GGNCC	1 cut(s)	735
AsuC2I	CCSGG	2 cut(s)	546, 589
AsuHPI	GGTGA	3 cut(s)	412, 812, 944
AsuII	TTCGAA	2 cut(s)	149, 386
AvaII	GGWCC	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	332
BbsI	GAAGAC	5 cut(s)	227, 342, 443, 488, 639
Bbv12I	GWGCWC	2 cut(s)	332, 644
BbvI	GCAGC	3 cut(s)	161, 225, 325
BccI	CCATC	2 cut(s)	733, 923
BceAI	ACGGC	1 cut(s)	526
BcnI	CCSGG	2 cut(s)	546, 589
BfaI	CTAG	1 cut(s)	852
BglII	AGATCT	2 cut(s)	17, 973
BisI	GCNGC	3 cut(s)	175, 214, 339
BlsI	GCNGC	3 cut(s)	176, 215, 340
Bme1390I	CCNGG	2 cut(s)	546, 589
Bme18I	GGWCC	1 cut(s)	735
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	735
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	2 cut(s)	546, 589
BmsI	GCATC	2 cut(s)	849, 940
BpiI	GAAGAC	5 cut(s)	227, 342, 443, 488, 639
BplI	GAGNNNNNCTC	4 cut(s)	55, 87, 314, 346
BpmI	CTGGAG	1 cut(s)	69
Bpu14I	TTCGAA	2 cut(s)	149, 386
BpuEI	CTTGAG	1 cut(s)	688
BpuMI	CCSGG	2 cut(s)	546, 589
BsaWI	WCCGGW	3 cut(s)	332, 397, 909
Bse1I	ACTGG	1 cut(s)	1028
Bse3DI	GCAATG	2 cut(s)	757, 1065
BseAI	TCCGGA	2 cut(s)	332, 909
BseGI	GGATG	1 cut(s)	148
BseMI	GCAATG	2 cut(s)	757, 1065
BseMII	CTCAG	2 cut(s)	482, 827
BseNI	ACTGG	1 cut(s)	1028
BseRI	GAGGAG	3 cut(s)	66, 76, 222
BseXI	GCAGC	3 cut(s)	161, 225, 325
BsiHKAI	GWGCWC	2 cut(s)	332, 644
BsiSI	CCGG	6 cut(s)	333, 398, 545, 588, 689, 910
Bsp119I	TTCGAA	2 cut(s)	149, 386
Bsp1286I	GDGCHC	2 cut(s)	332, 644
Bsp13I	TCCGGA	2 cut(s)	332, 909
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	17, 252, 355, 847, 973
BspACI	CCGC	4 cut(s)	216, 453, 459, 465
BspCNI	CTCAG	2 cut(s)	483, 826
BspEI	TCCGGA	2 cut(s)	332, 909
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	2 cut(s)	363, 842
BspQI	GCTCTTC	1 cut(s)	1014
BspT104I	TTCGAA	2 cut(s)	149, 386
BsrDI	GCAATG	2 cut(s)	757, 1065
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	1028
BssMI	GATC	5 cut(s)	17, 252, 355, 847, 973
Bst4CI	ACNGT	3 cut(s)	110, 131, 1086
Bst6I	CTCTTC	5 cut(s)	88, 96, 189, 679, 1014
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	2 cut(s)	149, 386
BstC8I	GCNNGC	2 cut(s)	281, 562
BstDEI	CTNAG	2 cut(s)	491, 813
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	5 cut(s)	20, 255, 358, 850, 976
BstMBI	GATC	5 cut(s)	17, 252, 355, 847, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 280, 285
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	2 cut(s)	544, 587
BstV1I	GCAGC	3 cut(s)	161, 225, 325
BstV2I	GAAGAC	5 cut(s)	227, 342, 443, 488, 639
BstX2I	RGATCY	3 cut(s)	17, 847, 973
BstYI	RGATCY	3 cut(s)	17, 847, 973
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	281, 562
Cfr13I	GGNCC	1 cut(s)	735
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	7, 247, 653, 711
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	491, 813
DpnI	GATC	5 cut(s)	19, 254, 357, 849, 975
DpnII	GATC	5 cut(s)	17, 252, 355, 847, 973
Eam1104I	CTCTTC	5 cut(s)	88, 96, 189, 679, 1014
EarI	CTCTTC	5 cut(s)	88, 96, 189, 679, 1014
EciI	GGCGGA	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	735
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	3 cut(s)	303, 630, 1033
EcoICRI	GAGCTC	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	4 cut(s)	10, 250, 656, 714
FatI	CATG	4 cut(s)	6, 246, 652, 710
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	175, 214, 339
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	3 cut(s)	175, 214, 339
FspBI	CTAG	1 cut(s)	852
GluI	GCNGC	3 cut(s)	175, 214, 339
GsuI	CTGGAG	1 cut(s)	69
HapII	CCGG	6 cut(s)	333, 398, 545, 588, 689, 910
Hin1II	CATG	4 cut(s)	10, 250, 656, 714
HindIII	AAGCTT	1 cut(s)	916
HinfI	GANTC	9 cut(s)	70, 98, 122, 146, 323, 365, 394, 793, 809
HpaII	CCGG	6 cut(s)	333, 398, 545, 588, 689, 910
HphI	GGTGA	3 cut(s)	412, 812, 944
Hpy166II	GTNNAC	3 cut(s)	297, 477, 666
Hpy188I	TCNGA	7 cut(s)	322, 355, 424, 649, 816, 973, 1052
Hpy188III	TCNNGA	7 cut(s)	48, 95, 256, 298, 333, 598, 910
Hpy8I	GTNNAC	3 cut(s)	297, 477, 666
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	3 cut(s)	51, 60, 397
HpyCH4III	ACNGT	3 cut(s)	110, 131, 1086
HpyCH4IV	ACGT	3 cut(s)	382, 594, 636
HpyCH4V	TGCA	3 cut(s)	283, 341, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 280, 285
HpyF3I	CTNAG	2 cut(s)	491, 813
HpySE526I	ACGT	3 cut(s)	382, 594, 636
Hsp92II	CATG	4 cut(s)	10, 250, 656, 714
Kpn2I	TCCGGA	2 cut(s)	332, 909
Kzo9I	GATC	5 cut(s)	17, 252, 355, 847, 973
LguI	GCTCTTC	1 cut(s)	1014
LmnI	GCTCC	4 cut(s)	335, 335, 425, 623
Lsp1109I	GCAGC	3 cut(s)	161, 225, 325
LweI	GCATC	2 cut(s)	849, 940
MaeI	CTAG	1 cut(s)	852
MaeII	ACGT	3 cut(s)	382, 594, 636
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	5 cut(s)	19, 254, 357, 849, 975
MboI	GATC	5 cut(s)	17, 252, 355, 847, 973
MflI	RGATCY	3 cut(s)	17, 847, 973
MhlI	GDGCHC	2 cut(s)	332, 644
MluCI	AATT	3 cut(s)	259, 583, 904
MlyI	GAGTC	4 cut(s)	64, 332, 374, 403
MmeI	TCCRAC	2 cut(s)	150, 601
MroI	TCCGGA	2 cut(s)	332, 909
MroXI	GAANNNNTTC	1 cut(s)	1023
MseI	TTAA	2 cut(s)	201, 987
MslI	CAYNNNNRTG	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	6 cut(s)	333, 398, 545, 588, 689, 910
MspR9I	CCNGG	2 cut(s)	546, 589
MwoI	GCNNNNNNNGC	3 cut(s)	171, 280, 285
NciI	CCSGG	2 cut(s)	546, 589
NdeII	GATC	5 cut(s)	17, 252, 355, 847, 973
NlaIII	CATG	4 cut(s)	10, 250, 656, 714
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	3 cut(s)	266, 284, 979
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	2 cut(s)	149, 386
PciSI	GCTCTTC	1 cut(s)	1014
PdmI	GAANNNNTTC	1 cut(s)	1023
PfeI	GAWTC	5 cut(s)	98, 122, 146, 793, 809
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	3 cut(s)	176, 215, 340
PleI	GAGTC	4 cut(s)	64, 331, 373, 402
PpsI	GAGTC	4 cut(s)	64, 331, 373, 402
Psp124BI	GAGCTC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	735
PsuI	RGATCY	3 cut(s)	17, 847, 973
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	831
SacI	GAGCTC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	1014
SaqAI	TTAA	2 cut(s)	201, 987
SatI	GCNGC	3 cut(s)	175, 214, 339
Sau3AI	GATC	5 cut(s)	17, 252, 355, 847, 973
Sau96I	GGNCC	1 cut(s)	735
SchI	GAGTC	4 cut(s)	64, 332, 374, 403
ScrFI	CCNGG	2 cut(s)	546, 589
SduI	GDGCHC	2 cut(s)	332, 644
SfaNI	GCATC	2 cut(s)	849, 940
SfuI	TTCGAA	2 cut(s)	149, 386
SinI	GGWCC	1 cut(s)	735
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
Sse9I	AATT	3 cut(s)	259, 583, 904
SsiI	CCGC	4 cut(s)	216, 453, 459, 465
SspMI	CTAG	1 cut(s)	852
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	544, 587
TaaI	ACNGT	3 cut(s)	110, 131, 1086
TaiI	ACGT	3 cut(s)	385, 597, 639
TaqI	TCGA	9 cut(s)	113, 149, 255, 311, 326, 368, 386, 575, 981
TasI	AATT	3 cut(s)	259, 583, 904
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	5 cut(s)	98, 122, 146, 793, 809
Tru1I	TTAA	2 cut(s)	201, 987
Tru9I	TTAA	2 cut(s)	201, 987
TseI	GCWGC	3 cut(s)	174, 213, 338
TspDTI	ATGAA	5 cut(s)	135, 556, 855, 957, 1050
VpaK11BI	GGWCC	1 cut(s)	735
XapI	RAATTY	1 cut(s)	904
XceI	RCATGY	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	1023
XspI	CTAG	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.