FvH4_2g31260

Protein BIG GRAIN 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
24011144 .. 24012433
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31260.t1

Sequence Viewer

Length: 1290 bp
ATGTCAAAGTGGGATAGCCCTTCTTTCTCTTCTAGTCTTTTGGATAAAATTTACCACTCAATTGACGACGGCGAGAGGCGAGGTGAGGACGTGAAGTTTTACGGCGAGACGAAGACGACGGCATTGCCGAAGAGAAACAGCAAAAGCGGGAGAAATATTGCTGTGGAGGAGGAGATGGCGGCGATTCGCAGAGCTTGTTTGATTGAGAAATGGATTGAGAAGAAGGCAAAGGAGAAGGCCGAGGCAGAACGGAGGAGCAGGAAATTGGAGAGGGATCATGATGACAGTGTGTTTTTCAGTTCAAATTCATGCTCTTCCGAGTCGAGTTCCGGCGGATTCTCCTCGTCGGACGCTGAGTCCATGTATGGCTCTCGCCCGCAGAGGGCGTCTTGTTTTGTTCCTTCTCTGTGGCCGAAGCCGATTCGGACTCGACCGGTGAAAACAGAGGAGAAGAAAACAGAGAAGAAACAGAGTGCTCTGTCTCGTCAACAGAGAGATTTTTGCTTGCTTGATGATTATACTCAGAGTCGGATCACAGATCGTACTATGAAGTTGGAAGAAGCTACGATCAAGTCCAAATCAAGGGCATTGAAGCTCTACGACAATCTAAAGAAGGTGAAGCAGCCAATCTCTCCTGGCGGTCGCGTTGCGAGTTTTCTCAATTCTCTCTTCACAACAGGGCAAGTCAAGAAGAGCAAGGGCTCATCATCAGTTTCAGGGTATGAAGAAACAGAGAGGAGAATATATTCACTGCAGGGCCCAACGTGTTCTTCTGCTTCATCATTTTCAAGGTCATGTCTAAGCAAAAACTCACCCAGCACAAGAGAAAAGTTGCGCAATGGGGTTAAGAAATCGGTCCAATTCTACCCGGTAAGTGTTGTAGTTGGCGAGGATCGTCAACCGCATAGCCAAAAGTGCGTGTACGAAGAACAAGACGCACATCTTATGCCTGTAACTGTGCCGACGGCATGGAAAATCGGTCGATCTCGGTCGAGAAGAACAGAGGAAGAGATCGTCAAGCTTCGAGTATTGGAGAAAAGCAGGCAAGCAGAAGAAGCAGCCCGGGAGTTTCTGAAAGACCACCGTCGCAACCAAGCTAAGAATGAGTCTTTATTCAGTAGAGACTATAACAACCATGATGATGATATGGATGATGATGATGCTAGTTGTTCGAGTTCGGATCTTTTCGAGCTCGATCACCTTGCGGTGGCCGGAAAAGAAAGGTATCTGGAAGAGCTTCCGGTGTACGAAACCACTCGTGTCAAATGTACGAATCGTGCTATTTTCTAG

Protein Analysis

430

Amino Acids

48.9

Weight (kDa)

9.16

Isoelectric Point (pI)

72.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 836
AccII CGCG 1 cut(s) 645
AciI CCGC 7 cut(s) 147, 179, 333, 377, 639, 902, 1205
AclWI GGATC 4 cut(s) 282, 539, 900, 1188
AcoI YGGCCR 2 cut(s) 410, 1209
AcsI RAATTY 2 cut(s) 48, 304
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 4 cut(s) 544, 923, 1247, 1270
AfiI CCNNNNNNNGG 3 cut(s) 382, 582, 1207
AflIII ACRYGT 1 cut(s) 764
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 3 cut(s) 303, 592, 789
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 634
AjuI GAANNNNNNNTTGG 2 cut(s) 754, 786
AluBI AGCT 7 cut(s) 194, 563, 595, 1021, 1097, 1192, 1237
AluI AGCT 7 cut(s) 194, 563, 595, 1021, 1097, 1192, 1237
Alw21I GWGCWC 2 cut(s) 478, 1194
Alw26I GTCTC 3 cut(s) 101, 486, 1116
AlwI GGATC 4 cut(s) 282, 539, 900, 1188
Ama87I CYCGRG 1 cut(s) 1062
AoxI GGCC 4 cut(s) 237, 410, 757, 1209
ApaI GGGCCC 1 cut(s) 761
ApeKI GCWGC 2 cut(s) 622, 1058
ApoI RAATTY 2 cut(s) 48, 304
AsiGI ACCGGT 1 cut(s) 433
Asp700I GAANNNNTTC 2 cut(s) 745, 1236
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 3 cut(s) 757, 758, 856
AsuC2I CCSGG 3 cut(s) 869, 1063, 1064
AsuHPI GGTGA 5 cut(s) 95, 448, 628, 804, 1190
AvaI CYCGRG 1 cut(s) 1062
AvaII GGWCC 1 cut(s) 856
BaeGI GKGCMC 1 cut(s) 761
BanII GRGCYC 3 cut(s) 704, 761, 1194
BauI CACGAG 1 cut(s) 1257
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 2 cut(s) 478, 1194
BbvI GCAGC 2 cut(s) 634, 1070
BccI CCATC 1 cut(s) 169
BceAI ACGGC 4 cut(s) 85, 118, 135, 981
BcgI CGANNNNNNTGC 4 cut(s) 106, 140, 1184, 1218
BciT130I CCWGG 1 cut(s) 636
BcnI CCSGG 3 cut(s) 869, 1063, 1064
BcoDI GTCTC 3 cut(s) 101, 486, 1116
BfaI CTAG 3 cut(s) 33, 1164, 1288
BfmI CTRYAG 1 cut(s) 752
BisI GCNGC 3 cut(s) 180, 623, 1059
BlsI GCNGC 3 cut(s) 181, 624, 1060
Bme1390I CCNGG 4 cut(s) 636, 869, 1063, 1064
Bme18I GGWCC 1 cut(s) 856
BmeRI GACNNNNNGTC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 1062
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 757, 758, 856
BmiI GGNNCC 1 cut(s) 759
BmrFI CCNGG 4 cut(s) 636, 869, 1063, 1064
BmsI GCATC 1 cut(s) 1150
BoxI GACNNNNGTC 1 cut(s) 1083
BpiI GAAGAC 1 cut(s) 119
BpuMI CCSGG 3 cut(s) 869, 1063, 1064
BsaHI GRCGYC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 240, 1062
BsaWI WCCGGW 2 cut(s) 433, 1240
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 582, 1207
Bse118I RCCGGY 1 cut(s) 433
Bse3DI GCAATG 2 cut(s) 122, 844
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 2 cut(s) 240, 1062
BseGI GGATG 1 cut(s) 1156
BseLI CCNNNNNNNGG 3 cut(s) 382, 582, 1207
BseMI GCAATG 2 cut(s) 122, 844
BseMII CTCAG 2 cut(s) 345, 536
BseRI GAGGAG 6 cut(s) 182, 185, 268, 331, 461, 751
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 2 cut(s) 634, 1070
BseYI CCCAGC 1 cut(s) 815
Bsh1236I CGCG 1 cut(s) 645
Bsh1285I CGRYCG 4 cut(s) 434, 643, 982, 992
BshFI GGCC 4 cut(s) 239, 412, 759, 1211
BshTI ACCGGT 1 cut(s) 433
BsiEI CGRYCG 4 cut(s) 434, 643, 982, 992
BsiHKAI GWGCWC 2 cut(s) 478, 1194
BsiHKCI CYCGRG 1 cut(s) 1062
BsiSI CCGG 6 cut(s) 330, 434, 869, 1063, 1212, 1241
BslI CCNNNNNNNGG 3 cut(s) 382, 582, 1207
BsmAI GTCTC 3 cut(s) 101, 486, 1116
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 4 cut(s) 239, 412, 759, 1211
BsoBI CYCGRG 1 cut(s) 1062
Bsp120I GGGCCC 1 cut(s) 757
Bsp1286I GDGCHC 4 cut(s) 478, 704, 761, 1194
Bsp143I GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
BspACI CCGC 7 cut(s) 147, 179, 333, 377, 639, 902, 1205
BspANI GGCC 4 cut(s) 239, 412, 759, 1211
BspCNI CTCAG 2 cut(s) 346, 535
BspFNI CGCG 1 cut(s) 645
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 759
BspMAI CTGCAG 1 cut(s) 756
BspPI GGATC 4 cut(s) 282, 539, 900, 1188
BspQI GCTCTTC 3 cut(s) 319, 686, 1227
BsrDI GCAATG 2 cut(s) 122, 844
BsrFI RCCGGY 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 2 cut(s) 240, 1062
BssMI GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
BssNI GRCGYC 1 cut(s) 386
BssSI CACGAG 1 cut(s) 1257
Bst2BI CACGAG 1 cut(s) 1257
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 3 cut(s) 287, 958, 1085
Bst6I CTCTTC 7 cut(s) 34, 125, 319, 674, 686, 1002, 1227
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 377, 506, 1043, 1047
BstDEI CTNAG 4 cut(s) 354, 522, 800, 1098
BstF5I GGATG 1 cut(s) 1156
BstFNI CGCG 1 cut(s) 645
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 9 cut(s) 277, 534, 541, 570, 895, 986, 1014, 1183, 1198
BstMAI GTCTC 3 cut(s) 101, 486, 1116
BstMBI GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
BstMCI CGRYCG 4 cut(s) 434, 643, 982, 992
BstMWI GCNNNNNNNGC 2 cut(s) 915, 1055
BstNI CCWGG 1 cut(s) 636
BstPAI GACNNNNGTC 1 cut(s) 1083
BstSCI CCNGG 4 cut(s) 634, 867, 1061, 1062
BstSFI CTRYAG 1 cut(s) 752
BstSLI GKGCMC 1 cut(s) 761
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 634, 1070
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 1180
BstYI RGATCY 1 cut(s) 1180
BsuRI GGCC 4 cut(s) 239, 412, 759, 1211
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 1156
BtsI GCAGTG 1 cut(s) 749
BtsIMutI CAGTG 2 cut(s) 292, 749
Cac8I GCNNGC 4 cut(s) 377, 506, 1043, 1047
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 837
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 3 cut(s) 757, 758, 856
Cfr9I CCCGGG 1 cut(s) 1062
CseI GACGC 3 cut(s) 359, 375, 944
Csp6I GTAC 4 cut(s) 543, 922, 1246, 1269
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 6 cut(s) 278, 309, 361, 795, 969, 1136
CviQI GTAC 4 cut(s) 543, 922, 1246, 1269
DdeI CTNAG 4 cut(s) 354, 522, 800, 1098
DpnI GATC 9 cut(s) 276, 533, 540, 569, 894, 985, 1013, 1182, 1197
DpnII GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
DriI GACNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 2 cut(s) 410, 1209
Eam1104I CTCTTC 7 cut(s) 34, 125, 319, 674, 686, 1002, 1227
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 7 cut(s) 34, 125, 319, 674, 686, 1002, 1227
EciI GGCGGA 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 1192
Eco24I GRGCYC 3 cut(s) 704, 761, 1194
Eco47I GGWCC 1 cut(s) 856
Eco53kI GAGCTC 1 cut(s) 1192
Eco88I CYCGRG 1 cut(s) 1062
EcoICRI GAGCTC 1 cut(s) 1192
EcoO109I RGGNCCY 1 cut(s) 757
EcoRII CCWGG 1 cut(s) 634
EcoT38I GRGCYC 3 cut(s) 704, 761, 1194
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 6 cut(s) 281, 312, 364, 798, 972, 1139
FatI CATG 6 cut(s) 277, 308, 360, 794, 968, 1135
FauI CCCGC 2 cut(s) 140, 384
Fnu4HI GCNGC 3 cut(s) 180, 623, 1059
FokI GGATG 1 cut(s) 1163
FriOI GRGCYC 3 cut(s) 704, 761, 1194
Fsp4HI GCNGC 3 cut(s) 180, 623, 1059
FspBI CTAG 3 cut(s) 33, 1164, 1288
FspI TGCGCA 1 cut(s) 836
GlaI GCGC 1 cut(s) 836
GluI GCNGC 3 cut(s) 180, 623, 1059
GsaI CCCAGC 1 cut(s) 819
HaeIII GGCC 4 cut(s) 239, 412, 759, 1211
HapII CCGG 6 cut(s) 330, 434, 869, 1063, 1212, 1241
HgaI GACGC 3 cut(s) 359, 375, 944
HhaI GCGC 1 cut(s) 837
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 6 cut(s) 281, 312, 364, 798, 972, 1139
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HincII GTYRAC 2 cut(s) 488, 899
HindII GTYRAC 2 cut(s) 488, 899
HindIII AAGCTT 1 cut(s) 1019
HinfI GANTC 9 cut(s) 184, 320, 336, 356, 421, 427, 526, 1106, 1273
HpaII CCGG 6 cut(s) 330, 434, 869, 1063, 1212, 1241
HphI GGTGA 5 cut(s) 95, 448, 628, 804, 1190
Hpy166II GTNNAC 4 cut(s) 488, 899, 922, 1246
Hpy188I TCNGA 7 cut(s) 319, 349, 426, 525, 531, 1074, 1180
Hpy188III TCNNGA 4 cut(s) 278, 688, 993, 1229
Hpy8I GTNNAC 4 cut(s) 488, 899, 922, 1246
Hpy99I CGWCG 5 cut(s) 71, 121, 349, 967, 1089
HpyAV CCTTC 5 cut(s) 30, 217, 229, 411, 607
HpyCH4III ACNGT 3 cut(s) 287, 958, 1085
HpyCH4IV ACGT 2 cut(s) 90, 764
HpyCH4V TGCA 1 cut(s) 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 915, 1055
HpyF3I CTNAG 4 cut(s) 354, 522, 800, 1098
HpySE526I ACGT 2 cut(s) 90, 764
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 6 cut(s) 281, 312, 364, 798, 972, 1139
HspAI GCGC 1 cut(s) 835
Kzo9I GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
LguI GCTCTTC 3 cut(s) 319, 686, 1227
LmnI GCTCC 1 cut(s) 255
Lsp1109I GCAGC 2 cut(s) 634, 1070
LweI GCATC 1 cut(s) 1150
MaeI CTAG 3 cut(s) 33, 1164, 1288
MaeII ACGT 2 cut(s) 90, 764
MaeIII GTNAC 1 cut(s) 952
MalI GATC 9 cut(s) 276, 533, 540, 569, 894, 985, 1013, 1182, 1197
MboI GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
MfeI CAATTG 1 cut(s) 60
MflI RGATCY 1 cut(s) 1180
MhlI GDGCHC 4 cut(s) 478, 704, 761, 1194
MluCI AATT 6 cut(s) 48, 60, 263, 304, 661, 860
MlyI GAGTC 5 cut(s) 329, 365, 421, 535, 1115
MmeI TCCRAC 3 cut(s) 327, 509, 534
MroXI GAANNNNTTC 2 cut(s) 745, 1236
MseI TTAA 1 cut(s) 846
MslI CAYNNNNRTG 1 cut(s) 1140
MspI CCGG 6 cut(s) 330, 434, 869, 1063, 1212, 1241
MspR9I CCNGG 4 cut(s) 636, 869, 1063, 1064
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 636
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 915, 1055
NciI CCSGG 3 cut(s) 869, 1063, 1064
NdeII GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
NlaIII CATG 6 cut(s) 281, 312, 364, 798, 972, 1139
NlaIV GGNNCC 1 cut(s) 759
NmeAIII GCCGAG 1 cut(s) 265
NsbI TGCGCA 1 cut(s) 836
PagI TCATGA 1 cut(s) 277
PciSI GCTCTTC 3 cut(s) 319, 686, 1227
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdmI GAANNNNTTC 2 cut(s) 745, 1236
PfeI GAWTC 4 cut(s) 184, 336, 421, 1273
PinAI ACCGGT 1 cut(s) 433
PkrI GCNGC 3 cut(s) 181, 624, 1060
PleI GAGTC 5 cut(s) 328, 364, 421, 534, 1114
PpsI GAGTC 5 cut(s) 328, 364, 421, 534, 1114
PshAI GACNNNNGTC 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 1194
Psp6I CCWGG 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 759
PspOMI GGGCCC 1 cut(s) 757
PspPI GGNCC 3 cut(s) 757, 758, 856
PstI CTGCAG 1 cut(s) 756
PsuI RGATCY 1 cut(s) 1180
RsaI GTAC 4 cut(s) 544, 923, 1247, 1270
RsaNI GTAC 4 cut(s) 543, 922, 1246, 1269
RseI CAYNNNNRTG 1 cut(s) 1140
SacI GAGCTC 1 cut(s) 1194
SapI GCTCTTC 3 cut(s) 319, 686, 1227
SaqAI TTAA 1 cut(s) 846
SatI GCNGC 3 cut(s) 180, 623, 1059
Sau3AI GATC 9 cut(s) 274, 531, 538, 567, 892, 983, 1011, 1180, 1195
Sau96I GGNCC 3 cut(s) 757, 758, 856
SchI GAGTC 5 cut(s) 329, 365, 421, 535, 1115
ScrFI CCNGG 4 cut(s) 636, 869, 1063, 1064
SduI GDGCHC 4 cut(s) 478, 704, 761, 1194
SfaNI GCATC 1 cut(s) 1150
SfcI CTRYAG 1 cut(s) 752
SinI GGWCC 1 cut(s) 856
SmaI CCCGGG 1 cut(s) 1064
SmiMI CAYNNNNRTG 1 cut(s) 1140
Sse9I AATT 6 cut(s) 48, 60, 263, 304, 661, 860
SsiI CCGC 7 cut(s) 147, 179, 333, 377, 639, 902, 1205
SspI AATATT 1 cut(s) 157
SspMI CTAG 3 cut(s) 33, 1164, 1288
SstI GAGCTC 1 cut(s) 1194
StyD4I CCNGG 4 cut(s) 634, 867, 1061, 1062
TaaI ACNGT 3 cut(s) 287, 958, 1085
TaiI ACGT 2 cut(s) 93, 767
TaqI TCGA 8 cut(s) 323, 430, 982, 992, 1024, 1172, 1188, 1194
TaqII GACCGA 3 cut(s) 844, 968, 978
TasI AATT 6 cut(s) 48, 60, 263, 304, 661, 860
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 4 cut(s) 184, 336, 421, 1273
Tru1I TTAA 1 cut(s) 846
Tru9I TTAA 1 cut(s) 846
TscAI CASTG 2 cut(s) 292, 756
TseI GCWGC 2 cut(s) 622, 1058
TspDTI ATGAA 4 cut(s) 297, 563, 738, 768
TspGWI ACGGA 1 cut(s) 265
TspMI CCCGGG 1 cut(s) 1062
TspRI CASTG 2 cut(s) 292, 756
VpaK11BI GGWCC 1 cut(s) 856
XapI RAATTY 2 cut(s) 48, 304
XmaI CCCGGG 1 cut(s) 1062
XmnI GAANNNNTTC 2 cut(s) 745, 1236
XspI CTAG 3 cut(s) 33, 1164, 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.