Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

6787043 .. 6788239

Gene Structure 1197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1086600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTATGTGAGGGAGAGGTCACCGAGAGAAGAAACGTTTTCGAGGCGAAGAAGAAACCCGTCTTTCTCTTCTTCACTACTCGACTCCATCTACCGCTCGATTGATGAATCGAGCGGTGGAGATGGAGATCAGGGTTATGTTCGAGATTCGAGTACAATGGTAAAGAAACAGAGCTGCTCTGCTAAAGGAGGCAAGGAGAAGGTTAATCTACGAAGGGCTATTATGATTGAGAAATGGGTCGAGAAGCAGAATGTTCACAGCTCCATGTTCTCGAACTCCGCTTCGAGTTCCTCGGAGTCGAGCTCGGGAGCTGCATTTTCGTCTTCCGAAACAGATTCGAGCTGCAGATCAAGAACAAAACCGAAGGCGGTCGAGGGGAGGTTCGTGCAGTTCGAGGAGAAGGAAAAGAGTGAGAGTGGCGGGGGAGGTGGGTTTTCAAAGACAAAGCTCCGAGCTTTGAAAATCTATGGAGAACTGAAGAAAGTGAAGCAACCCATTTCGCCAGGCGGGCGTATTGCGAGCTTCATCAATTCAATTTTCAATTCCGGGAACGTCAAAAAGGCAAAAATGTGTCATGTTGGAGCTGTGGAAGATGTGAGCATCACAGAGCATGTGTCGAATTCGAAATCATCTTGTTCTTCTTCTTCTGCGCCGGCTTCTACTTTCTCAAGGTCGTGCTTGAGCAAACCGTCTTCAAGAGCGAAAAAATCGAGCAATGGCACGAAAAGGACGGTTAGATTTTACCCGACGAGTATGGTTCTTGGTGAGGATTCTCAGCTTTCAACCCACCACAAATGTGTGTTTGAAGAAGACCCAAGCTTGATGCCAAAACCCTCTTTTCAAAAATATGCAAGGTCTTGCCCTGGTAATTATGATACGCTGATCCAATCGGGCGAGAGTCGAACGCAAGACCTCGTTACATTCAATTGTACCACAAAATCAACGAGTTACAGGAAGACTTGCGCGGTTAGTCCAACAAGTTATAGGACGACCGGCGCGGTTGGTCCAACTTTTGTGAGAAGTTTTTGTGACAATGCAGATGATGAAGGAAGTGATCATGATGCTGAGAGTTGTTCAAGTTCTGATCTTTTTGAGCTGAATCATCCAGTTGGGGTTGGAAGGTACATGGAAGAACTTCCAGTGTATGAGACTACTAATTTCAGAACCAATCAAGCTATTGCCCAAGGGTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

43.57

Weight (kDa)

9.18

Isoelectric Point (pI)

68.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	96, 114
AccII	CGCG	2 cut(s)	965, 998
AciI	CCGC	8 cut(s)	94, 114, 279, 368, 420, 507, 965, 998
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	1 cut(s)	619
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	3 cut(s)	154, 931, 1124
AjnI	CCWGG	2 cut(s)	502, 862
AleI	CACNNNNGTG	1 cut(s)	795
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	1142
AlwI	GGATC	1 cut(s)	877
Ama87I	CYCGRG	1 cut(s)	304
ApeKI	GCWGC	3 cut(s)	174, 311, 342
ApoI	RAATTY	1 cut(s)	619
Asp700I	GAANNNNTTC	1 cut(s)	1134
AspLEI	GCGC	3 cut(s)	652, 965, 998
AspS9I	GGNCC	1 cut(s)	1004
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	12, 776
AsuII	TTCGAA	1 cut(s)	623
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	1004
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	4 cut(s)	315, 684, 816, 962
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	161, 298, 329
BccI	CCATC	2 cut(s)	95, 116
BciT130I	CCWGG	2 cut(s)	504, 864
BclI	TGATCA	1 cut(s)	1054
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	1 cut(s)	1142
BfmI	CTRYAG	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	508
BisI	GCNGC	3 cut(s)	175, 312, 343
BlsI	GCNGC	3 cut(s)	176, 313, 344
Bme1390I	CCNGG	3 cut(s)	504, 547, 864
Bme18I	GGWCC	1 cut(s)	1004
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	1004
BmrFI	CCNGG	3 cut(s)	504, 547, 864
BmsI	GCATC	3 cut(s)	609, 813, 1051
BpiI	GAAGAC	4 cut(s)	315, 684, 816, 962
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu14I	TTCGAA	1 cut(s)	623
BpuEI	CTTGAG	2 cut(s)	652, 700
BpuMI	CCSGG	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	291, 862, 1183
Bse118I	RCCGGY	2 cut(s)	652, 992
Bse1I	ACTGG	2 cut(s)	1106, 1139
Bse3DI	GCAATG	1 cut(s)	721
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	504, 864
BseDI	CCNNGG	3 cut(s)	291, 862, 1183
BseGI	GGATG	1 cut(s)	1102
BseJI	GATNNNNATC	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	788, 1056
BseNI	ACTGG	2 cut(s)	1106, 1139
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	3 cut(s)	161, 298, 329
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	965, 998
Bsh1285I	CGRYCG	2 cut(s)	372, 993
BsiEI	CGRYCG	2 cut(s)	372, 993
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	3 cut(s)	546, 653, 993
BsmAI	GTCTC	1 cut(s)	1142
BsoBI	CYCGRG	1 cut(s)	304
Bsp119I	TTCGAA	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	5 cut(s)	127, 347, 882, 1054, 1084
BspACI	CCGC	8 cut(s)	94, 114, 279, 368, 420, 507, 965, 998
BspCNI	CTCAG	2 cut(s)	787, 1057
BspFNI	CGCG	2 cut(s)	965, 998
BspHI	TCATGA	1 cut(s)	1057
BspMAI	CTGCAG	1 cut(s)	347
BspPI	GGATC	1 cut(s)	877
BspT104I	TTCGAA	1 cut(s)	623
BsrBI	CCGCTC	2 cut(s)	96, 114
BsrDI	GCAATG	1 cut(s)	721
BsrFI	RCCGGY	2 cut(s)	652, 992
BsrI	ACTGG	2 cut(s)	1106, 1139
BssAI	RCCGGY	2 cut(s)	652, 992
BssECI	CCNNGG	3 cut(s)	291, 862, 1183
BssMI	GATC	5 cut(s)	127, 347, 882, 1054, 1084
BssT1I	CCWWGG	1 cut(s)	1183
Bst2UI	CCWGG	2 cut(s)	504, 864
Bst4CI	ACNGT	2 cut(s)	690, 733
Bst6I	CTCTTC	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	509, 520, 654
BstDEI	CTNAG	2 cut(s)	774, 1065
BstEII	GGTNACC	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	1102
BstFNI	CGCG	2 cut(s)	965, 998
BstHHI	GCGC	3 cut(s)	652, 965, 998
BstKTI	GATC	5 cut(s)	130, 350, 885, 1057, 1087
BstMAI	GTCTC	1 cut(s)	1142
BstMBI	GATC	5 cut(s)	127, 347, 882, 1054, 1084
BstMCI	CGRYCG	2 cut(s)	372, 993
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	2 cut(s)	504, 864
BstNSI	RCATGY	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	18
BstSCI	CCNGG	3 cut(s)	502, 545, 862
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	2 cut(s)	965, 998
BstV1I	GCAGC	3 cut(s)	161, 298, 329
BstV2I	GAAGAC	4 cut(s)	315, 684, 816, 962
BtsCI	GGATG	1 cut(s)	1102
BtsIMutI	CAGTG	1 cut(s)	1146
Cac8I	GCNNGC	3 cut(s)	509, 520, 654
CciI	TCATGA	1 cut(s)	1057
CfoI	GCGC	3 cut(s)	652, 965, 998
Cfr10I	RCCGGY	2 cut(s)	652, 992
Cfr13I	GGNCC	1 cut(s)	1004
Csp6I	GTAC	3 cut(s)	153, 930, 1123
CviAII	CATG	5 cut(s)	265, 575, 611, 1058, 1126
CviQI	GTAC	3 cut(s)	153, 930, 1123
DdeI	CTNAG	2 cut(s)	774, 1065
DpnI	GATC	5 cut(s)	129, 349, 884, 1056, 1086
DpnII	GATC	5 cut(s)	127, 347, 882, 1054, 1084
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	1183
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	1004
Eco53kI	GAGCTC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	304
Eco91I	GGTNACC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	502, 862
EcoT14I	CCWWGG	1 cut(s)	1183
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	1183
FaeI	CATG	5 cut(s)	268, 578, 614, 1061, 1129
FatI	CATG	5 cut(s)	264, 574, 610, 1057, 1125
FauI	CCCGC	2 cut(s)	413, 500
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	3 cut(s)	175, 312, 343
FokI	GGATG	1 cut(s)	1089
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	175, 312, 343
GlaI	GCGC	3 cut(s)	651, 964, 997
GluI	GCNGC	3 cut(s)	175, 312, 343
HapII	CCGG	3 cut(s)	546, 653, 993
HhaI	GCGC	3 cut(s)	652, 965, 998
Hin1II	CATG	5 cut(s)	268, 578, 614, 1061, 1129
Hin6I	GCGC	3 cut(s)	650, 963, 996
HinP1I	GCGC	3 cut(s)	650, 963, 996
HindIII	AAGCTT	1 cut(s)	817
HinfI	GANTC	8 cut(s)	83, 107, 146, 296, 335, 770, 898, 1099
HpaII	CCGG	3 cut(s)	546, 653, 993
HphI	GGTGA	2 cut(s)	12, 776
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	5 cut(s)	295, 328, 452, 1084, 1163
Hpy188III	TCNNGA	7 cut(s)	143, 241, 271, 306, 351, 696, 1058
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	6 cut(s)	193, 207, 358, 394, 1040, 1113
HpyCH4III	ACNGT	2 cut(s)	690, 733
HpyCH4IV	ACGT	2 cut(s)	35, 552
HpyCH4V	TGCA	5 cut(s)	314, 345, 388, 851, 1037
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	2 cut(s)	774, 1065
HpySE526I	ACGT	2 cut(s)	35, 552
Hsp92II	CATG	5 cut(s)	268, 578, 614, 1061, 1129
HspAI	GCGC	3 cut(s)	650, 963, 996
KroI	GCCGGC	1 cut(s)	652
KroNI	GCCGGC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	5 cut(s)	127, 347, 882, 1054, 1084
LmnI	GCTCC	4 cut(s)	266, 308, 453, 581
Lsp1109I	GCAGC	3 cut(s)	161, 298, 329
LweI	GCATC	3 cut(s)	609, 813, 1051
MaeII	ACGT	2 cut(s)	35, 552
MaeIII	GTNAC	4 cut(s)	18, 916, 947, 1028
MalI	GATC	5 cut(s)	129, 349, 884, 1056, 1086
MbiI	CCGCTC	2 cut(s)	96, 114
MboI	GATC	5 cut(s)	127, 347, 882, 1054, 1084
MfeI	CAATTG	1 cut(s)	925
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	7 cut(s)	529, 534, 541, 619, 868, 925, 1156
MlyI	GAGTC	3 cut(s)	77, 305, 907
MmeI	TCCRAC	4 cut(s)	559, 998, 1031, 1096
MroNI	GCCGGC	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	1134
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	795
MspI	CCGG	3 cut(s)	546, 653, 993
MspR9I	CCNGG	3 cut(s)	504, 547, 864
MunI	CAATTG	1 cut(s)	925
MvaI	CCWGG	2 cut(s)	504, 864
MvnI	CGCG	2 cut(s)	965, 998
MwoI	GCNNNNNNNGC	1 cut(s)	508
NaeI	GCCGGC	1 cut(s)	654
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	5 cut(s)	127, 347, 882, 1054, 1084
NgoMIV	GCCGGC	1 cut(s)	652
NlaIII	CATG	5 cut(s)	268, 578, 614, 1061, 1129
NmuCI	GTSAC	2 cut(s)	18, 1028
NspI	RCATGY	1 cut(s)	614
NspV	TTCGAA	1 cut(s)	623
OliI	CACNNNNGTG	1 cut(s)	795
PagI	TCATGA	1 cut(s)	1057
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	1134
PfeI	GAWTC	5 cut(s)	107, 146, 335, 770, 1099
PfoI	TCCNGGA	1 cut(s)	545
PkrI	GCNGC	3 cut(s)	176, 313, 344
PleI	GAGTC	3 cut(s)	77, 304, 906
PpsI	GAGTC	3 cut(s)	77, 304, 906
Psp124BI	GAGCTC	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	502, 862
PspEI	GGTNACC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	502, 862
PspPI	GGNCC	1 cut(s)	1004
PstI	CTGCAG	1 cut(s)	347
RsaI	GTAC	3 cut(s)	154, 931, 1124
RsaNI	GTAC	3 cut(s)	153, 930, 1123
RseI	CAYNNNNRTG	1 cut(s)	795
SacI	GAGCTC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	175, 312, 343
Sau3AI	GATC	5 cut(s)	127, 347, 882, 1054, 1084
Sau96I	GGNCC	1 cut(s)	1004
SchI	GAGTC	3 cut(s)	77, 305, 907
ScrFI	CCNGG	3 cut(s)	504, 547, 864
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	3 cut(s)	609, 813, 1051
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	623
SinI	GGWCC	1 cut(s)	1004
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	2 cut(s)	667, 679
SmoI	CTYRAG	2 cut(s)	667, 679
Sse9I	AATT	7 cut(s)	529, 534, 541, 619, 868, 925, 1156
SsiI	CCGC	8 cut(s)	94, 114, 279, 368, 420, 507, 965, 998
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	502, 545, 862
StyI	CCWWGG	1 cut(s)	1183
TaaI	ACNGT	2 cut(s)	690, 733
TaiI	ACGT	2 cut(s)	38, 555
TasI	AATT	7 cut(s)	529, 534, 541, 619, 868, 925, 1156
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	5 cut(s)	107, 146, 335, 770, 1099
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	1146
TseFI	GTSAC	2 cut(s)	18, 1028
TseI	GCWGC	3 cut(s)	174, 311, 342
Tsp45I	GTSAC	2 cut(s)	18, 1028
TspDTI	ATGAA	3 cut(s)	120, 514, 1059
TspRI	CASTG	1 cut(s)	1146
VpaK11BI	GGWCC	1 cut(s)	1004
XapI	RAATTY	1 cut(s)	619
XceI	RCATGY	1 cut(s)	614
XmnI	GAANNNNTTC	1 cut(s)	1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.