Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

17162464 .. 17163627

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1213800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTATGTGAGGGAGAGGTTACCGAAAGAAGAAACATTTTTGAGGCGAAGAAGAAACCCATCTTTCTCTTCTTCGCTACTCGACTCCATCTACCGCTCCATTGATGAATCGAGCGGTGGAGATGGAGATCAGGGTTATGTTCGAGAGTCGACTGCAATGGTCAGGAAACAGAGCAGTTCTACTAAAGGAGACAATGAGAAGGTTAATCTTCGAAGGGCTATTATGATTGAGAATTGGGTCGAGAAGCAGAGCGTTCACAGCTCCATGTTCTCGAACTCCGCTTCGAGTTCCTCGGAGTCGAGCTCGGGAGCTGCATTTTCGTCTTCCGAAACAGATTCGAGCTACAGATCAAGAACAAAACCGAAGGCGGTCGAGCAGAGGTTCGTGCAGTTCGAGGAGAAGGAAAAGATTGAGAGTGGCGGAGGAAGTGCGTTTTCAAGGACGAAGCTACGAGCTTTGAAAATCTATGAAGAATTGAAGAAAGTGAAGCAACCAATTTCGCCCGGCGGGCGGATTGTGAGCTTCATCAACTCGATTTTCAATTCCGGCAATGTCAAGAAGCCAAAAATGTGTTATGTTGGAGCTGTGGAAGATGTGACCATTTCAGAGAATGTGTCGAATTCGAAATCGGCTTGTCCTTCTTCTTCTGCTTCTGCTTCTACTTTCTCAAGGTCTTGCTTGAGCAAACCGTCTTCAAGAGCGAAAAAATCGAGCAATGGCACTAAAAGGTCCGTTAGATTTTACCCAGTGAGTGTGATTCTTGGTGAGGATTCTCAGCCTCCAAACCACCTCAAATGTGTGTTTGAAGAAGACCCAAGCTTGATGCCAAAACCCTCTTTTCAAAAATATGCAAGGGCTTGTCCTGGTAATTATGATAAGCTGATCCAATCGGGTAAGAGTCGAACAGAAGACCTGCTCACATTTAATCGTAGCACAAAATCAACAAGTTACAGAACGACCGGGGCGGTTAGTCAAAATTTGGTGAGAAGTTTTTGCGACAATGCAGATGATGAAGAAAGTGATCATGATGCTGAGAGCTGTTCAAGTTCTGATCTTTTTGAGCTGAATCATCCAGTTGGGGTTGGAAGGTACATGGAAGAACTTCCTGTGTATGAGACTACTAATTTCAGAACCAATCAAGCTATTGCCCAAGGGTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

42.88

Weight (kDa)

9.07

Isoelectric Point (pI)

71.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	921
AccBSI	CCGCTC	2 cut(s)	96, 114
AccI	GTMKAC	1 cut(s)	149
AciI	CCGC	8 cut(s)	94, 114, 279, 368, 420, 507, 511, 965
AclWI	GGATC	1 cut(s)	877
AcsI	RAATTY	2 cut(s)	619, 976
AfaI	GTAC	1 cut(s)	1091
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	8 cut(s)	438, 460, 478, 541, 696, 806, 842, 1044
AjnI	CCWGG	1 cut(s)	862
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	183, 1109
AlwI	GGATC	1 cut(s)	877
Ama87I	CYCGRG	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	2 cut(s)	619, 976
Asp700I	GAANNNNTTC	1 cut(s)	1101
AspS9I	GGNCC	1 cut(s)	729
AsuC2I	CCSGG	2 cut(s)	504, 961
AsuHPI	GGTGA	2 cut(s)	776, 994
AsuII	TTCGAA	2 cut(s)	211, 623
AvaI	CYCGRG	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	729
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	4 cut(s)	315, 684, 816, 915
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	3 cut(s)	67, 95, 116
BciT130I	CCWGG	1 cut(s)	864
BclI	TGATCA	1 cut(s)	1021
BcnI	CCSGG	2 cut(s)	504, 961
BcoDI	GTCTC	2 cut(s)	183, 1109
BfmI	CTRYAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	921
BglI	GCCNNNNNGGC	1 cut(s)	508
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	3 cut(s)	504, 864, 961
Bme18I	GGWCC	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	729
BmrFI	CCNGG	3 cut(s)	504, 864, 961
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	2 cut(s)	813, 1018
BmuI	ACTGGG	1 cut(s)	740
BpiI	GAAGAC	4 cut(s)	315, 684, 816, 915
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
Bpu14I	TTCGAA	2 cut(s)	211, 623
BpuEI	CTTGAG	2 cut(s)	652, 700
BpuMI	CCSGG	2 cut(s)	504, 961
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	291, 960, 1150
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	746, 1073
Bse3DI	GCAATG	3 cut(s)	162, 556, 721
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	864
BseDI	CCNNGG	3 cut(s)	291, 960, 1150
BseGI	GGATG	1 cut(s)	1069
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMI	GCAATG	3 cut(s)	162, 556, 721
BseMII	CTCAG	2 cut(s)	788, 1023
BseNI	ACTGG	2 cut(s)	746, 1073
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	407
Bsh1285I	CGRYCG	2 cut(s)	372, 960
BsiEI	CGRYCG	2 cut(s)	372, 960
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	304
BsiSI	CCGG	3 cut(s)	504, 546, 960
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	2 cut(s)	183, 1109
BsoBI	CYCGRG	1 cut(s)	304
Bsp119I	TTCGAA	2 cut(s)	211, 623
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	5 cut(s)	127, 347, 882, 1021, 1051
BspACI	CCGC	8 cut(s)	94, 114, 279, 368, 420, 507, 511, 965
BspCNI	CTCAG	2 cut(s)	787, 1024
BspHI	TCATGA	1 cut(s)	1024
BspMI	ACCTGC	1 cut(s)	921
BspPI	GGATC	1 cut(s)	877
BspT104I	TTCGAA	2 cut(s)	211, 623
BsrBI	CCGCTC	2 cut(s)	96, 114
BsrDI	GCAATG	3 cut(s)	162, 556, 721
BsrI	ACTGG	2 cut(s)	746, 1073
BssECI	CCNNGG	3 cut(s)	291, 960, 1150
BssMI	GATC	5 cut(s)	127, 347, 882, 1021, 1051
BssT1I	CCWWGG	1 cut(s)	1150
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	1 cut(s)	690
Bst6I	CTCTTC	1 cut(s)	73
BstBI	TTCGAA	2 cut(s)	211, 623
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	2 cut(s)	774, 1032
BstEII	GGTNACC	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	1069
BstKTI	GATC	5 cut(s)	130, 350, 885, 1024, 1054
BstMAI	GTCTC	2 cut(s)	183, 1109
BstMBI	GATC	5 cut(s)	127, 347, 882, 1021, 1051
BstMCI	CGRYCG	2 cut(s)	372, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 508
BstNI	CCWGG	1 cut(s)	864
BstPI	GGTNACC	1 cut(s)	18
BstSCI	CCNGG	3 cut(s)	502, 862, 959
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	4 cut(s)	315, 684, 816, 915
BtsCI	GGATG	1 cut(s)	1069
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	1 cut(s)	509
CciI	TCATGA	1 cut(s)	1024
Cfr13I	GGNCC	1 cut(s)	729
Csp6I	GTAC	1 cut(s)	1090
CviAII	CATG	3 cut(s)	265, 1025, 1093
CviQI	GTAC	1 cut(s)	1090
DdeI	CTNAG	2 cut(s)	774, 1032
DpnI	GATC	5 cut(s)	129, 349, 884, 1023, 1053
DpnII	GATC	5 cut(s)	127, 347, 882, 1021, 1051
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	2 cut(s)	435, 526
Ecl136II	GAGCTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	1150
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	729
Eco53kI	GAGCTC	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	304
Eco91I	GGTNACC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	862
EcoT14I	CCWWGG	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	1150
FaeI	CATG	3 cut(s)	268, 1028, 1096
FatI	CATG	3 cut(s)	264, 1024, 1092
FauI	CCCGC	1 cut(s)	500
FbaI	TGATCA	1 cut(s)	1021
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	1056
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HapII	CCGG	3 cut(s)	504, 546, 960
Hin1II	CATG	3 cut(s)	268, 1028, 1096
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	817
HinfI	GANTC	9 cut(s)	83, 107, 146, 296, 335, 757, 770, 898, 1066
HpaII	CCGG	3 cut(s)	504, 546, 960
HphI	GGTGA	2 cut(s)	776, 994
Hpy166II	GTNNAC	2 cut(s)	150, 256
Hpy188I	TCNGA	5 cut(s)	295, 328, 607, 1051, 1130
Hpy188III	TCNNGA	9 cut(s)	143, 163, 241, 271, 306, 351, 556, 696, 1025
Hpy8I	GTNNAC	2 cut(s)	150, 256
HpyAV	CCTTC	6 cut(s)	193, 207, 358, 394, 648, 1080
HpyCH4III	ACNGT	1 cut(s)	690
HpyCH4V	TGCA	5 cut(s)	155, 314, 388, 851, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 508
HpyF3I	CTNAG	2 cut(s)	774, 1032
Hsp92II	CATG	3 cut(s)	268, 1028, 1096
Ksp22I	TGATCA	1 cut(s)	1021
Kzo9I	GATC	5 cut(s)	127, 347, 882, 1021, 1051
LmnI	GCTCC	4 cut(s)	101, 266, 308, 581
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	813, 1018
MaeIII	GTNAC	3 cut(s)	18, 595, 947
MalI	GATC	5 cut(s)	129, 349, 884, 1023, 1053
MbiI	CCGCTC	2 cut(s)	96, 114
MboI	GATC	5 cut(s)	127, 347, 882, 1021, 1051
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	8 cut(s)	232, 473, 495, 541, 619, 868, 976, 1123
MlyI	GAGTC	4 cut(s)	77, 155, 305, 907
MmeI	TCCRAC	2 cut(s)	559, 1063
MroXI	GAANNNNTTC	1 cut(s)	1101
MseI	TTAA	2 cut(s)	204, 924
MspI	CCGG	3 cut(s)	504, 546, 960
MspR9I	CCNGG	3 cut(s)	504, 864, 961
MvaI	CCWGG	1 cut(s)	864
MwoI	GCNNNNNNNGC	2 cut(s)	258, 508
NciI	CCSGG	2 cut(s)	504, 961
NdeII	GATC	5 cut(s)	127, 347, 882, 1021, 1051
NlaIII	CATG	3 cut(s)	268, 1028, 1096
NmuCI	GTSAC	1 cut(s)	595
NspV	TTCGAA	2 cut(s)	211, 623
PagI	TCATGA	1 cut(s)	1024
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	1101
PfeI	GAWTC	5 cut(s)	107, 335, 757, 770, 1066
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	4 cut(s)	77, 154, 304, 906
PpsI	GAGTC	4 cut(s)	77, 154, 304, 906
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	862
PspEI	GGTNACC	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	862
PspPI	GGNCC	1 cut(s)	729
RsaI	GTAC	1 cut(s)	1091
RsaNI	GTAC	1 cut(s)	1090
SacI	GAGCTC	1 cut(s)	305
SalI	GTCGAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	204, 924
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	5 cut(s)	127, 347, 882, 1021, 1051
Sau96I	GGNCC	1 cut(s)	729
SchI	GAGTC	4 cut(s)	77, 155, 305, 907
ScrFI	CCNGG	3 cut(s)	504, 864, 961
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	2 cut(s)	813, 1018
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	2 cut(s)	211, 623
SinI	GGWCC	1 cut(s)	729
SmlI	CTYRAG	2 cut(s)	667, 679
SmoI	CTYRAG	2 cut(s)	667, 679
Sse9I	AATT	8 cut(s)	232, 473, 495, 541, 619, 868, 976, 1123
SsiI	CCGC	8 cut(s)	94, 114, 279, 368, 420, 507, 511, 965
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	502, 862, 959
StyI	CCWWGG	1 cut(s)	1150
TaaI	ACNGT	1 cut(s)	690
TasI	AATT	8 cut(s)	232, 473, 495, 541, 619, 868, 976, 1123
TfiI	GAWTC	5 cut(s)	107, 335, 757, 770, 1066
Tru1I	TTAA	2 cut(s)	204, 924
Tru9I	TTAA	2 cut(s)	204, 924
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	4 cut(s)	120, 483, 514, 1026
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	729
XapI	RAATTY	2 cut(s)	619, 976
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.