Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

4357340 .. 4357951

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCCGGTCACTGTTCCGACCGCATGGAAAATTGGTCGATCTCCGGGGAGAAAAGCGGAGGAGGAGCTTAAGCTTCAAGCGTCGGAGAAAAGCAGAAGAGTTGAGGAAGCGGCCAGAGAGATTTTGAGAGATAGCCATCGGAACCAAGTTAAGAGTGAAATAGTGAACAGAGATTATCGTGACCGCCATGATGGTGATGACGATGATGCTGCTAGTTGTTCGAGTTCGGATCTTTTTGAGCTTGATCACCTTGCGGTGATCGGAAAAGAAAGATATCTGGAAGAGCTTCCGGTGTACGAAACCACTCACGTTCGTACAAATCGTGCCATTGCTAATGGCTTGATAATGTATTTGATTACAGCATATACAATTATAGAACTAGATTTGTTCTTGATTAGTTTTCTCTCTTTAACTCTAATTTATGAAGTAGATGATCGACCTCAGGTAAAAAGGACACTGTCTTTGTTAATTGACATAACCCCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007623 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0040008 GO:0042221 GO:0044464 GO:0048511 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.6

Weight (kDa)

5.15

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	21, 56, 110, 184, 254
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	2 cut(s)	296, 316
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	77
AluBI	AGCT	4 cut(s)	67, 73, 241, 286
AluI	AGCT	4 cut(s)	67, 73, 241, 286
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
Asp700I	GAANNNNTTC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	206, 239, 268
AxyI	CCTNAGG	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	144, 185
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	45
BfaI	CTAG	2 cut(s)	213, 380
BfrI	CTTAAG	1 cut(s)	68
BisI	GCNGC	2 cut(s)	111, 210
BlsI	GCNGC	2 cut(s)	112, 211
Bme1390I	CCNGG	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	289
Bse118I	RCCGGY	1 cut(s)	4
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	44
BseJI	GATNNNNATC	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	455
BseRI	GAGGAG	2 cut(s)	74, 77
BseXI	GCAGC	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	21
BsiSI	CCGG	3 cut(s)	5, 44, 290
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	5 cut(s)	38, 229, 244, 258, 433
BspACI	CCGC	5 cut(s)	21, 56, 110, 184, 254
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	237
BspQI	GCTCTTC	1 cut(s)	276
BspTI	CTTAAG	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	5 cut(s)	38, 229, 244, 258, 433
Bst4CI	ACNGT	2 cut(s)	13, 459
Bst6I	CTCTTC	2 cut(s)	91, 276
BstAFI	CTTAAG	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	441
BstKTI	GATC	5 cut(s)	41, 232, 247, 261, 436
BstMBI	GATC	5 cut(s)	38, 229, 244, 258, 433
BstMCI	CGRYCG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	9, 455
Cfr10I	RCCGGY	1 cut(s)	4
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	295, 315
CviAII	CATG	2 cut(s)	24, 188
CviJI	RGCY	7 cut(s)	67, 73, 113, 135, 241, 286, 339
CviKI_1	RGCY	7 cut(s)	67, 73, 113, 135, 241, 286, 339
CviQI	GTAC	2 cut(s)	295, 315
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	5 cut(s)	40, 231, 246, 260, 435
DpnII	GATC	5 cut(s)	38, 229, 244, 258, 433
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	91, 276
EarI	CTCTTC	2 cut(s)	91, 276
Eco32I	GATATC	1 cut(s)	275
Eco81I	CCTNAGG	1 cut(s)	441
EcoRV	GATATC	1 cut(s)	275
FaeI	CATG	2 cut(s)	27, 191
FaiI	YATR	7 cut(s)	25, 189, 364, 366, 374, 423, 476
FatI	CATG	2 cut(s)	23, 187
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	111, 210
Fsp4HI	GCNGC	2 cut(s)	111, 210
FspBI	CTAG	2 cut(s)	213, 380
GluI	GCNGC	2 cut(s)	111, 210
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	3 cut(s)	5, 44, 290
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	27, 191
HindIII	AAGCTT	1 cut(s)	71
HpaII	CCGG	3 cut(s)	5, 44, 290
HphI	GGTGA	3 cut(s)	206, 239, 268
Hpy166II	GTNNAC	2 cut(s)	166, 295
Hpy188I	TCNGA	5 cut(s)	18, 85, 141, 229, 263
Hpy188III	TCNNGA	3 cut(s)	179, 278, 391
Hpy8I	GTNNAC	2 cut(s)	166, 295
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	13, 459
HpyCH4IV	ACGT	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	27, 191
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	38, 229, 244, 258, 433
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	18, 57, 127, 263, 303, 428
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	213, 380
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	7, 179
MalI	GATC	5 cut(s)	40, 231, 246, 260, 435
MboI	GATC	5 cut(s)	38, 229, 244, 258, 433
MboII	GAAGA	2 cut(s)	108, 293
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	4 cut(s)	30, 369, 417, 468
MmeI	TCCRAC	2 cut(s)	41, 63
MnlI	CCTC	4 cut(s)	52, 55, 97, 450
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	4 cut(s)	69, 150, 410, 467
MslI	CAYNNNNRTG	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	3 cut(s)	5, 44, 290
MspR9I	CCNGG	1 cut(s)	45
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	5 cut(s)	38, 229, 244, 258, 433
NlaIII	CATG	2 cut(s)	27, 191
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	2 cut(s)	7, 179
PciSI	GCTCTTC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	285
PflFI	GACNNNGTC	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	112, 211
PspN4I	GGNNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	229
PsyI	GACNNNGTC	1 cut(s)	457
RsaI	GTAC	2 cut(s)	296, 316
RsaNI	GTAC	2 cut(s)	295, 315
RseI	CAYNNNNRTG	1 cut(s)	192
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	69, 150, 410, 467
SatI	GCNGC	2 cut(s)	111, 210
Sau3AI	GATC	5 cut(s)	38, 229, 244, 258, 433
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	8 cut(s)	69, 75, 243, 252, 288, 312, 442, 447
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	4 cut(s)	30, 369, 417, 468
SsiI	CCGC	5 cut(s)	21, 56, 110, 184, 254
SspMI	CTAG	2 cut(s)	213, 380
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	13, 459
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	37, 221, 436
TasI	AATT	4 cut(s)	30, 369, 417, 468
TauI	GCSGC	1 cut(s)	113
Tru1I	TTAA	4 cut(s)	69, 150, 410, 467
Tru9I	TTAA	4 cut(s)	69, 150, 410, 467
TscAI	CASTG	2 cut(s)	16, 462
TseFI	GTSAC	2 cut(s)	7, 179
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	7, 179
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	2 cut(s)	16, 462
Tth111I	GACNNNGTC	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	2 cut(s)	213, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.