MD08G1069700.v1.1

Protein BIG GRAIN 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
5526404 .. 5527753
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1069700.v1.1.491

Sequence Viewer

Length: 1350 bp
ATGTCGAGGTGGGAAAATACACTGAGAGAAGACAGATACAGGCACGAAAAGAAAAACCCTTCTTTCTCATCCTCTCTCCTTGACAAAATTTACCGTTCGATCGACGAGGGTTCTCCGAGAAACCGCGAGGACTCGATGTTTTACAATGATGCAATGCCCAAGAAACAGAGCAGAAGCGGCGTGAAAAGCAGCAGAGCAGTCGAAGAAGACGAGATGGCGAGCCTCCGCCGAGCTTGTTTGATCGAGAAATGGATGGAAAAGAAGGTCAATCAGAAGGTCGGAGTACAAAGAAGACAGCATTTGGGTGAATTGGACCGAAAATTAGACCGTGATCACGACCGTGATCTTGATGCTTTGTTTTTCAGCTCCACTTCCAGCTCCTCGGATTCGAGCTCCGGCGGATTCTCCTCCTCGGACGCTGAGTCCATGTTGGGGTCTAAGTCGAGATCCTCTTGTTTTGCCCCGCCGTGGCCGAAGGCGGTTCGCACCAGCGTCTCGTCCCGGTCGGTGAAAACAGAGGAAAAAACAGAGAGGAAACAGAGGGAAGTGCACATGTTTGATGACTATCATTACAGTTGCTCCTCGGAGCCGACTCCGAAGCTCGACGAAGGCATAATTAAGTCGAAATCGAGGGCGCTGAAGATTTACAACAATCTAAGGAAGGTGAAACAGCCGCTTTCGCCGGGCGGTCGGGTTGCAAATTTCCTCAATTCAATCTTCACCGCAGGGCAGACCAAGAAAACAAAGAGCACTTCATCAATTGGAGGATACGAGGAAGCGAGTGTGGAGAGGAAACTGAAATCAGGGCAAGACTCGACGTGTTCTTCGGCCTCTTCATTTTCAAGATCATGTTTGAGTAAGAACTCTCCATCTACTCGAGAAAAACTGCGAAACGGGGTTAAAAGATCGGTTCATTTCTATCCGGTGAGTGTGATCGTGGACGAAGATTGCAGGCCATGTGGGCAGAAATGCTTGTACGAAGGGGAGGATCAAACCCTAATGCCGGTCACTGTTCCGACCGCATGGAAAATTGGTCGATCTCCGGGGAGAAAAGCGGAGGAGGAGCTTAAGCTTCAAGCGTTGGAGAAAAGCAGAAGAGTTAAGGAAGCGGGCAGAGAGGTTTTGAGAGATAGCCATCGGAACCAAGTTACGAGTGAATTAGTGAACAGAGATTATCGTGACCGCCATGATGGTGATGACGATGATGCTGCTAGTTGTTCGAGTTCGGATCTTTTCGAGCTTGATCACCTTGCAGTGATCGGAAAAGAAAGATATCTGGAAGAGCTTCCGGTGTACGAAACCACTCACGTTCGTACAAATCGCGCCATTGCTAATGGCTTAATAATGTAG

Protein Analysis

450

Amino Acids

50.88

Weight (kDa)

9.13

Isoelectric Point (pI)

64.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 126, 1323
AclWI GGATC 3 cut(s) 441, 996, 1236
AcoI YGGCCR 1 cut(s) 470
AcsI RAATTY 2 cut(s) 87, 700
AcuI CTGAAG 1 cut(s) 659
AfaI GTAC 4 cut(s) 285, 977, 1295, 1315
AfiI CCNNNNNNNGG 3 cut(s) 432, 468, 1003
AflII CTTAAG 1 cut(s) 1067
AflIII ACRYGT 2 cut(s) 552, 818
AgsI TTSAA 3 cut(s) 714, 843, 1076
AhdI GACNNNNNGTC 1 cut(s) 421
AjiI CACGTC 1 cut(s) 819
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 9 cut(s) 233, 366, 378, 393, 601, 1066, 1072, 1240, 1285
AluI AGCT 9 cut(s) 233, 366, 378, 393, 601, 1066, 1072, 1240, 1285
Alw21I GWGCWC 3 cut(s) 395, 552, 752
Alw26I GTCTC 1 cut(s) 499
Alw44I GTGCAC 1 cut(s) 548
AlwI GGATC 3 cut(s) 441, 996, 1236
Ama87I CYCGRG 1 cut(s) 876
AoxI GGCC 3 cut(s) 470, 828, 953
ApaLI GTGCAC 1 cut(s) 548
ApeKI GCWGC 2 cut(s) 189, 1208
ApoI RAATTY 2 cut(s) 87, 700
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
Asp700I GAANNNNTTC 1 cut(s) 1284
AspLEI GCGC 2 cut(s) 637, 1325
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 3 cut(s) 502, 684, 1044
AsuHPI GGTGA 7 cut(s) 317, 520, 676, 712, 937, 1205, 1238
AvaI CYCGRG 1 cut(s) 876
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 552
BanII GRGCYC 1 cut(s) 395
BbsI GAAGAC 3 cut(s) 36, 213, 298
Bbv12I GWGCWC 3 cut(s) 395, 552, 752
BbvI GCAGC 2 cut(s) 201, 1195
BccI CCATC 5 cut(s) 208, 247, 877, 1143, 1184
BceAI ACGGC 1 cut(s) 451
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 1190, 1224
BciVI GTATCC 1 cut(s) 761
BclI TGATCA 2 cut(s) 331, 1243
BcnI CCSGG 3 cut(s) 502, 684, 1044
BcoDI GTCTC 1 cut(s) 499
BfaI CTAG 1 cut(s) 1212
BfoI RGCGCY 1 cut(s) 638
BfrI CTTAAG 1 cut(s) 1067
BfuI GTATCC 1 cut(s) 761
BglI GCCNNNNNGGC 1 cut(s) 961
BisI GCNGC 4 cut(s) 178, 190, 674, 1209
BlsI GCNGC 4 cut(s) 179, 191, 675, 1210
Bme1390I CCNGG 3 cut(s) 502, 684, 1044
Bme18I GGWCC 1 cut(s) 313
BmeRI GACNNNNNGTC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 876
BmgBI CACGTC 1 cut(s) 819
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 588, 1142
BmrFI CCNGG 3 cut(s) 502, 684, 1044
BmsI GCATC 3 cut(s) 139, 340, 1195
BpiI GAAGAC 3 cut(s) 36, 213, 298
BpuMI CCSGG 3 cut(s) 502, 684, 1044
BsaBI GATNNNNATC 2 cut(s) 564, 1134
BsaJI CCNNGG 5 cut(s) 381, 411, 467, 582, 1043
BsaWI WCCGGW 2 cut(s) 922, 1288
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 3 cut(s) 432, 468, 1003
Bse118I RCCGGY 1 cut(s) 1003
Bse3DI GCAATG 2 cut(s) 159, 1326
Bse8I GATNNNNATC 2 cut(s) 564, 1134
BseDI CCNNGG 5 cut(s) 381, 411, 467, 582, 1043
BseGI GGATG 2 cut(s) 68, 258
BseJI GATNNNNATC 2 cut(s) 564, 1134
BseLI CCNNNNNNNGG 3 cut(s) 432, 468, 1003
BseMI GCAATG 2 cut(s) 159, 1326
BseMII CTCAG 2 cut(s) 14, 411
BseRI GAGGAG 6 cut(s) 370, 397, 400, 571, 1073, 1076
BseSI GKGCMC 1 cut(s) 552
BseXI GCAGC 2 cut(s) 201, 1195
Bsh1236I CGCG 2 cut(s) 126, 1323
Bsh1285I CGRYCG 5 cut(s) 102, 340, 506, 691, 1020
BshFI GGCC 3 cut(s) 472, 830, 955
BsiEI CGRYCG 5 cut(s) 102, 340, 506, 691, 1020
BsiHKAI GWGCWC 3 cut(s) 395, 552, 752
BsiHKCI CYCGRG 1 cut(s) 876
BsiSI CCGG 7 cut(s) 396, 502, 683, 923, 1004, 1043, 1289
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 3 cut(s) 432, 468, 1003
BsmAI GTCTC 1 cut(s) 499
BsmBI CGTCTC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 3 cut(s) 472, 830, 955
BsoBI CYCGRG 1 cut(s) 876
Bsp1286I GDGCHC 3 cut(s) 395, 552, 752
BspANI GGCC 3 cut(s) 472, 830, 955
BspCNI CTCAG 2 cut(s) 15, 412
BspFNI CGCG 2 cut(s) 126, 1323
BspLI GGNNCC 2 cut(s) 588, 1142
BspPI GGATC 3 cut(s) 441, 996, 1236
BspQI GCTCTTC 1 cut(s) 1275
BspTI CTTAAG 1 cut(s) 1067
BsrDI GCAATG 2 cut(s) 159, 1326
BsrFI RCCGGY 1 cut(s) 1003
BssAI RCCGGY 1 cut(s) 1003
BssECI CCNNGG 5 cut(s) 381, 411, 467, 582, 1043
Bst4CI ACNGT 5 cut(s) 95, 329, 341, 575, 1012
Bst6I CTCTTC 3 cut(s) 838, 1090, 1275
BstAFI CTTAAG 1 cut(s) 1067
BstC8I GCNNGC 3 cut(s) 220, 953, 1111
BstDEI CTNAG 4 cut(s) 23, 420, 438, 656
BstDSI CCRYGG 1 cut(s) 467
BstF5I GGATG 2 cut(s) 68, 258
BstFNI CGCG 2 cut(s) 126, 1323
BstH2I RGCGCY 1 cut(s) 638
BstHHI GCGC 2 cut(s) 637, 1325
BstMAI GTCTC 1 cut(s) 499
BstMCI CGRYCG 5 cut(s) 102, 340, 506, 691, 1020
BstMWI GCNNNNNNNGC 4 cut(s) 177, 186, 679, 961
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 3 cut(s) 500, 682, 1042
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 2 cut(s) 126, 1323
BstV1I GCAGC 2 cut(s) 201, 1195
BstV2I GAAGAC 3 cut(s) 36, 213, 298
BstX2I RGATCY 2 cut(s) 446, 1228
BstYI RGATCY 2 cut(s) 446, 1228
BsuI GTATCC 1 cut(s) 761
BsuRI GGCC 3 cut(s) 472, 830, 955
BtgI CCRYGG 1 cut(s) 467
BtrI CACGTC 1 cut(s) 819
BtsCI GGATG 2 cut(s) 68, 258
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 3 cut(s) 20, 1008, 1260
Cac8I GCNNGC 3 cut(s) 220, 953, 1111
CfoI GCGC 2 cut(s) 637, 1325
Cfr10I RCCGGY 1 cut(s) 1003
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 2 cut(s) 425, 481
Csp6I GTAC 4 cut(s) 284, 976, 1294, 1314
CviAII CATG 6 cut(s) 427, 553, 849, 957, 1023, 1187
CviQI GTAC 4 cut(s) 284, 976, 1294, 1314
DdeI CTNAG 4 cut(s) 23, 420, 438, 656
DriI GACNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 470
Eam1104I CTCTTC 3 cut(s) 838, 1090, 1275
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 3 cut(s) 838, 1090, 1275
EciI GGCGGA 2 cut(s) 215, 414
Ecl136II GAGCTC 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 395
Eco32I GATATC 1 cut(s) 1274
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 659
Eco88I CYCGRG 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 393
EcoRV GATATC 1 cut(s) 1274
EcoT38I GRGCYC 1 cut(s) 395
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 6 cut(s) 430, 556, 852, 960, 1026, 1190
FaiI YATR 7 cut(s) 428, 554, 614, 850, 958, 1024, 1188
FaqI GGGAC 1 cut(s) 484
FatI CATG 6 cut(s) 426, 552, 848, 956, 1022, 1186
FauI CCCGC 2 cut(s) 471, 1102
FbaI TGATCA 2 cut(s) 331, 1243
Fnu4HI GCNGC 4 cut(s) 178, 190, 674, 1209
FokI GGATG 2 cut(s) 55, 265
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 4 cut(s) 178, 190, 674, 1209
FspBI CTAG 1 cut(s) 1212
GlaI GCGC 2 cut(s) 636, 1324
GluI GCNGC 4 cut(s) 178, 190, 674, 1209
HaeII RGCGCY 1 cut(s) 638
HaeIII GGCC 3 cut(s) 472, 830, 955
HapII CCGG 7 cut(s) 396, 502, 683, 923, 1004, 1043, 1289
HgaI GACGC 2 cut(s) 425, 481
HhaI GCGC 2 cut(s) 637, 1325
Hin1II CATG 6 cut(s) 430, 556, 852, 960, 1026, 1190
Hin6I GCGC 2 cut(s) 635, 1323
HinP1I GCGC 2 cut(s) 635, 1323
HindIII AAGCTT 1 cut(s) 1070
HinfI GANTC 6 cut(s) 131, 386, 402, 422, 592, 812
HpaII CCGG 7 cut(s) 396, 502, 683, 923, 1004, 1043, 1289
HphI GGTGA 7 cut(s) 317, 520, 676, 712, 937, 1205, 1238
Hpy166II GTNNAC 4 cut(s) 550, 940, 1165, 1294
Hpy188III TCNNGA 8 cut(s) 244, 335, 347, 444, 843, 878, 1178, 1277
Hpy8I GTNNAC 4 cut(s) 550, 940, 1165, 1294
Hpy99I CGWCG 3 cut(s) 107, 608, 820
HpyAV CCTTC 7 cut(s) 69, 256, 268, 469, 602, 655, 974
HpyCH4III ACNGT 5 cut(s) 95, 329, 341, 575, 1012
HpyCH4IV ACGT 2 cut(s) 818, 1308
HpyCH4V TGCA 5 cut(s) 152, 550, 698, 951, 1253
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 186, 679, 961
HpyF3I CTNAG 4 cut(s) 23, 420, 438, 656
HpySE526I ACGT 2 cut(s) 818, 1308
Hsp92II CATG 6 cut(s) 430, 556, 852, 960, 1026, 1190
HspAI GCGC 2 cut(s) 635, 1323
Ksp22I TGATCA 2 cut(s) 331, 1243
LguI GCTCTTC 1 cut(s) 1275
LmnI GCTCC 6 cut(s) 371, 383, 398, 584, 586, 1063
Lsp1109I GCAGC 2 cut(s) 201, 1195
LweI GCATC 3 cut(s) 139, 340, 1195
MaeI CTAG 1 cut(s) 1212
MaeII ACGT 2 cut(s) 818, 1308
MaeIII GTNAC 3 cut(s) 1006, 1147, 1178
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 446, 1228
MhlI GDGCHC 3 cut(s) 395, 552, 752
MluCI AATT 9 cut(s) 87, 308, 320, 615, 700, 709, 759, 1029, 1157
MlyI GAGTC 4 cut(s) 125, 431, 586, 806
MmeI TCCRAC 3 cut(s) 259, 1040, 1062
MroXI GAANNNNTTC 1 cut(s) 1284
MseI TTAA 5 cut(s) 618, 900, 1068, 1101, 1340
MslI CAYNNNNRTG 3 cut(s) 303, 339, 1191
MspCI CTTAAG 1 cut(s) 1067
MspI CCGG 7 cut(s) 396, 502, 683, 923, 1004, 1043, 1289
MspR9I CCNGG 3 cut(s) 502, 684, 1044
MunI CAATTG 1 cut(s) 759
MvnI CGCG 2 cut(s) 126, 1323
MwoI GCNNNNNNNGC 4 cut(s) 177, 186, 679, 961
NciI CCSGG 3 cut(s) 502, 684, 1044
NlaIII CATG 6 cut(s) 430, 556, 852, 960, 1026, 1190
NlaIV GGNNCC 2 cut(s) 588, 1142
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 2 cut(s) 1006, 1178
NspI RCATGY 1 cut(s) 556
OliI CACNNNNGTG 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 876
PciI ACATGT 1 cut(s) 552
PciSI GCTCTTC 1 cut(s) 1275
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 1284
PfeI GAWTC 2 cut(s) 386, 402
PkrI GCNGC 4 cut(s) 179, 191, 675, 1210
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 4 cut(s) 125, 430, 586, 806
PpsI GAGTC 4 cut(s) 125, 430, 586, 806
PscI ACATGT 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 588, 1142
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 2 cut(s) 446, 1228
PvuI CGATCG 1 cut(s) 102
RsaI GTAC 4 cut(s) 285, 977, 1295, 1315
RsaNI GTAC 4 cut(s) 284, 976, 1294, 1314
RseI CAYNNNNRTG 3 cut(s) 303, 339, 1191
SacI GAGCTC 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 1275
SaqAI TTAA 5 cut(s) 618, 900, 1068, 1101, 1340
SatI GCNGC 4 cut(s) 178, 190, 674, 1209
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 4 cut(s) 125, 431, 586, 806
ScrFI CCNGG 3 cut(s) 502, 684, 1044
SduI GDGCHC 3 cut(s) 395, 552, 752
SfaNI GCATC 3 cut(s) 139, 340, 1195
Sfr274I CTCGAG 1 cut(s) 876
SinI GGWCC 1 cut(s) 313
SlaI CTCGAG 1 cut(s) 876
SmiMI CAYNNNNRTG 3 cut(s) 303, 339, 1191
SmlI CTYRAG 2 cut(s) 876, 1067
SmoI CTYRAG 2 cut(s) 876, 1067
Sse9I AATT 9 cut(s) 87, 308, 320, 615, 700, 709, 759, 1029, 1157
SspMI CTAG 1 cut(s) 1212
SstI GAGCTC 1 cut(s) 395
StyD4I CCNGG 3 cut(s) 500, 682, 1042
TaaI ACNGT 5 cut(s) 95, 329, 341, 575, 1012
TaiI ACGT 2 cut(s) 821, 1311
TaqII GACCGA 1 cut(s) 330
TasI AATT 9 cut(s) 87, 308, 320, 615, 700, 709, 759, 1029, 1157
TatI WGTACW 1 cut(s) 283
TauI GCSGC 2 cut(s) 180, 676
TfiI GAWTC 2 cut(s) 386, 402
Tru1I TTAA 5 cut(s) 618, 900, 1068, 1101, 1340
Tru9I TTAA 5 cut(s) 618, 900, 1068, 1101, 1340
TscAI CASTG 3 cut(s) 27, 1015, 1260
TseFI GTSAC 2 cut(s) 1006, 1178
TseI GCWGC 2 cut(s) 189, 1208
Tsp45I GTSAC 2 cut(s) 1006, 1178
TspDTI ATGAA 3 cut(s) 744, 825, 902
TspRI CASTG 3 cut(s) 27, 1015, 1260
Vha464I CTTAAG 1 cut(s) 1067
VneI GTGCAC 1 cut(s) 548
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 2 cut(s) 87, 700
XceI RCATGY 1 cut(s) 556
XhoI CTCGAG 1 cut(s) 876
XmnI GAANNNNTTC 1 cut(s) 1284
XspI CTAG 1 cut(s) 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.