Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

4355885 .. 4357200

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGCACGCGCTTGTCGAGCTTTATAAACCCTACCCCCTCTCTTCCCTGTTCCTTACTCCATCTCCAAGGCGTGCCATTTCGCTCTCATTGCCCTCCCTCTCTCTCTCTCTCTTTCTCTCTCTACTCTCCCTAAACAACAAGACAATCATCAATTGCTTCTCTCACACTTTTTTAACGCCATTATCGACGATTAGTTGGTCGCTCAGCTCAAACATTGCCCCCTCTCTCTCTCTCCCTAACATTTTCCCACCCTCCAATTGCGCTGCAGCTTTTGATCCTCTCCCAGCCGACACAAAAAAGTCACAAAAGCTACAGATTTCTGTAGCTAAAAACCTCAAATTATACAGTTCCATTTCTCAACAAACAATAATGTCGAGGTGGGAAAATACACTGAGAGAAGACAGATACAGGCACGAAAGGAAAAACCCTTCTTTCTCATCCTCTCTCCTTGACAAAATTTACCGTTCGATCGACGAGGGTTCTCCAAGAAACCGCGAGGACTCGATGTTTTACAATGAAACAATGCCGCAGAAACAGAGCAGAAGCGGCGGGAAAAGCGGCAGAGCAGTCGAAGAAGACGAGATGGCAAGCCTCCGCCGAGCTTGTTTGATCGAGAAATGGATGGAAAAGAAGGTCAGTCAGAAGGTCGGGGTACAAAGAAGACAGCATTTGGGTCAATTGGACCGAAAATTAGACCGTGATCACGACCGTGATCTTGATGCTTTGTTTTTCAGCTCCACTTCCAGCTCCTCGGATTCGAGCTCGGGCGGATTCTCCTCCTCGGACGCTGAGTCCATGTTCGGGTCTAAGTCGAGATCCTCGTGTTTTGCCCCGCCGTGGCCGAAGGCGGTTCGCACCAGCGTCTCGGCCCGGTCGGTGAAAACAGAGGAAAAAACAGAGAGGAAACAGAGGGAAGTGCACATGTTTGATGACTATCATTACAGTTGCTCCTCGGAGCCGACTCCGAAGCTCGACGAAGGCATAATTAAGTCGAAATCGAGGGCATTGAAGATTTACAACAATCTAAAGAAGGTGAAACAGCCGCTTTCGCCCGGCGGTCGGGTTTCAAATTTCCTCAATTCATTCTTCACCGCAGGGCAGACCAAGAAAACAAAGAGCACTTCATCAATTGGAGGATACGAGGAAGCGAGTGTGGAGAGGAAACTGAAATCAGGGCCAGACTCAACATGTTCTTCAGCCTCTTCATTTTCAAGATCGATGTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007623 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009733 GO:0009914 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0040008 GO:0042221 GO:0044464 GO:0048511 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048584 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080050 GO:0080113 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

45.79

Weight (kDa)

9.64

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccII	CGCG	2 cut(s)	8, 495
AclWI	GGATC	2 cut(s)	269, 810
AcoI	YGGCCR	1 cut(s)	839
AcsI	RAATTY	2 cut(s)	456, 1069
AcuI	CTGAAG	1 cut(s)	1179
AfaI	GTAC	1 cut(s)	654
AfiI	CCNNNNNNNGG	3 cut(s)	801, 837, 1059
AflIII	ACRYGT	2 cut(s)	921, 1187
AgsI	TTSAA	3 cut(s)	1009, 1068, 1212
AhdI	GACNNNNNGTC	1 cut(s)	790
AleI	CACNNNNGTG	1 cut(s)	708
Alw21I	GWGCWC	3 cut(s)	764, 921, 1121
Alw26I	GTCTC	1 cut(s)	868
Alw44I	GTGCAC	1 cut(s)	917
AlwI	GGATC	2 cut(s)	269, 810
Ama87I	CYCGRG	1 cut(s)	763
AoxI	GGCC	3 cut(s)	839, 867, 1175
ApaLI	GTGCAC	1 cut(s)	917
ApeKI	GCWGC	2 cut(s)	263, 266
ApoI	RAATTY	2 cut(s)	456, 1069
AspLEI	GCGC	2 cut(s)	10, 263
AspS9I	GGNCC	3 cut(s)	682, 868, 1175
AsuC2I	CCSGG	2 cut(s)	871, 1053
AsuHPI	GGTGA	3 cut(s)	889, 1045, 1081
AvaI	CYCGRG	1 cut(s)	763
AvaII	GGWCC	1 cut(s)	682
BaeGI	GKGCMC	1 cut(s)	921
BanII	GRGCYC	1 cut(s)	764
BauI	CACGAG	1 cut(s)	820
BbsI	GAAGAC	3 cut(s)	405, 582, 667
Bbv12I	GWGCWC	3 cut(s)	764, 921, 1121
BbvI	GCAGC	2 cut(s)	250, 278
BccI	CCATC	3 cut(s)	67, 577, 616
BceAI	ACGGC	1 cut(s)	820
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciVI	GTATCC	1 cut(s)	1130
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	2 cut(s)	871, 1053
BcoDI	GTCTC	1 cut(s)	868
BfmI	CTRYAG	3 cut(s)	264, 311, 321
BfuI	GTATCC	1 cut(s)	1130
BisI	GCNGC	6 cut(s)	264, 267, 527, 547, 559, 1043
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	6 cut(s)	265, 268, 528, 548, 560, 1044
Bme1390I	CCNGG	2 cut(s)	871, 1053
Bme18I	GGWCC	1 cut(s)	682
BmeRI	GACNNNNNGTC	1 cut(s)	790
BmeT110I	CYCGRG	1 cut(s)	763
BmgT120I	GGNCC	3 cut(s)	682, 868, 1175
BmiI	GGNNCC	1 cut(s)	957
BmrFI	CCNGG	2 cut(s)	871, 1053
BmsI	GCATC	1 cut(s)	709
BpiI	GAAGAC	3 cut(s)	405, 582, 667
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	871, 1053
Bsa29I	ATCGAT	1 cut(s)	1217
BsaBI	GATNNNNATC	1 cut(s)	933
BsaJI	CCNNGG	5 cut(s)	65, 750, 780, 836, 951
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 932, 962
Bsc4I	CCNNNNNNNGG	3 cut(s)	801, 837, 1059
Bse3DI	GCAATG	2 cut(s)	86, 213
Bse8I	GATNNNNATC	1 cut(s)	933
BseCI	ATCGAT	1 cut(s)	1217
BseDI	CCNNGG	5 cut(s)	65, 750, 780, 836, 951
BseGI	GGATG	2 cut(s)	437, 627
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	3 cut(s)	801, 837, 1059
BseMI	GCAATG	2 cut(s)	86, 213
BseMII	CTCAG	3 cut(s)	217, 383, 780
BseRI	GAGGAG	4 cut(s)	739, 766, 769, 940
BseSI	GKGCMC	1 cut(s)	921
BseXI	GCAGC	2 cut(s)	250, 278
BseYI	CCCAGC	1 cut(s)	283
Bsh1236I	CGCG	2 cut(s)	8, 495
Bsh1285I	CGRYCG	4 cut(s)	471, 709, 875, 1060
BshFI	GGCC	3 cut(s)	841, 869, 1177
BshVI	ATCGAT	1 cut(s)	1217
BsiEI	CGRYCG	4 cut(s)	471, 709, 875, 1060
BsiHKAI	GWGCWC	3 cut(s)	764, 921, 1121
BsiHKCI	CYCGRG	1 cut(s)	763
BsiSI	CCGG	2 cut(s)	871, 1053
BslI	CCNNNNNNNGG	3 cut(s)	801, 837, 1059
BsmAI	GTCTC	1 cut(s)	868
BsmBI	CGTCTC	1 cut(s)	868
BsnI	GGCC	3 cut(s)	841, 869, 1177
BsoBI	CYCGRG	1 cut(s)	763
Bsp1286I	GDGCHC	3 cut(s)	764, 921, 1121
Bsp143I	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
Bsp1720I	GCTNAGC	1 cut(s)	203
BspANI	GGCC	3 cut(s)	841, 869, 1177
BspCNI	CTCAG	3 cut(s)	216, 384, 781
BspDI	ATCGAT	1 cut(s)	1217
BspFNI	CGCG	2 cut(s)	8, 495
BspLI	GGNNCC	1 cut(s)	957
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	2 cut(s)	269, 810
BsrDI	GCAATG	2 cut(s)	86, 213
BssECI	CCNNGG	5 cut(s)	65, 750, 780, 836, 951
BssMI	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
BssSI	CACGAG	1 cut(s)	820
BssT1I	CCWWGG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	820
Bst4CI	ACNGT	5 cut(s)	347, 464, 698, 710, 944
Bst6I	CTCTTC	2 cut(s)	46, 1207
BstC8I	GCNNGC	3 cut(s)	6, 72, 589
BstDEI	CTNAG	4 cut(s)	203, 392, 789, 807
BstDSI	CCRYGG	1 cut(s)	836
BstF5I	GGATG	2 cut(s)	437, 627
BstFNI	CGCG	2 cut(s)	8, 495
BstHHI	GCGC	2 cut(s)	10, 263
BstKTI	GATC	7 cut(s)	277, 471, 612, 703, 715, 818, 1217
BstMAI	GTCTC	1 cut(s)	868
BstMBI	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
BstMCI	CGRYCG	4 cut(s)	471, 709, 875, 1060
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 88, 546, 555, 1048
BstNSI	RCATGY	2 cut(s)	925, 1191
BstSCI	CCNGG	2 cut(s)	869, 1051
BstSFI	CTRYAG	3 cut(s)	264, 311, 321
BstSLI	GKGCMC	1 cut(s)	921
BstUI	CGCG	2 cut(s)	8, 495
BstV1I	GCAGC	2 cut(s)	250, 278
BstV2I	GAAGAC	3 cut(s)	405, 582, 667
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	1217
BsuI	GTATCC	1 cut(s)	1130
BsuRI	GGCC	3 cut(s)	841, 869, 1177
BsuTUI	ATCGAT	1 cut(s)	1217
BtgI	CCRYGG	1 cut(s)	836
BtsCI	GGATG	2 cut(s)	437, 627
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	3 cut(s)	6, 72, 589
CfoI	GCGC	2 cut(s)	10, 263
Cfr13I	GGNCC	3 cut(s)	682, 868, 1175
ClaI	ATCGAT	1 cut(s)	1217
CseI	GACGC	2 cut(s)	794, 850
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	3 cut(s)	796, 922, 1188
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	4 cut(s)	203, 392, 789, 807
DpnI	GATC	7 cut(s)	276, 470, 611, 702, 714, 817, 1216
DpnII	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
DriI	GACNNNNNGTC	1 cut(s)	790
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	2 cut(s)	46, 1207
Eam1105I	GACNNNNNGTC	1 cut(s)	790
EarI	CTCTTC	2 cut(s)	46, 1207
EciI	GGCGGA	2 cut(s)	584, 783
Ecl136II	GAGCTC	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	764
Eco47I	GGWCC	1 cut(s)	682
Eco53kI	GAGCTC	1 cut(s)	762
Eco57I	CTGAAG	1 cut(s)	1179
Eco88I	CYCGRG	1 cut(s)	763
EcoICRI	GAGCTC	1 cut(s)	762
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	764
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	868
FaeI	CATG	3 cut(s)	799, 925, 1191
FaiI	YATR	6 cut(s)	24, 343, 797, 923, 983, 1189
FatI	CATG	3 cut(s)	795, 921, 1187
FauI	CCCGC	2 cut(s)	542, 840
FbaI	TGATCA	1 cut(s)	700
Fnu4HI	GCNGC	6 cut(s)	264, 267, 527, 547, 559, 1043
FokI	GGATG	2 cut(s)	424, 634
FriOI	GRGCYC	1 cut(s)	764
Fsp4HI	GCNGC	6 cut(s)	264, 267, 527, 547, 559, 1043
GlaI	GCGC	2 cut(s)	9, 262
GluI	GCNGC	6 cut(s)	264, 267, 527, 547, 559, 1043
GsaI	CCCAGC	1 cut(s)	287
HaeIII	GGCC	3 cut(s)	841, 869, 1177
HapII	CCGG	2 cut(s)	871, 1053
HgaI	GACGC	2 cut(s)	794, 850
HhaI	GCGC	2 cut(s)	10, 263
Hin1II	CATG	3 cut(s)	799, 925, 1191
Hin6I	GCGC	2 cut(s)	8, 261
HinP1I	GCGC	2 cut(s)	8, 261
HinfI	GANTC	6 cut(s)	500, 755, 771, 791, 961, 1181
HpaII	CCGG	2 cut(s)	871, 1053
HphI	GGTGA	3 cut(s)	889, 1045, 1081
Hpy166II	GTNNAC	1 cut(s)	919
Hpy188I	TCNGA	5 cut(s)	642, 754, 784, 955, 966
Hpy188III	TCNNGA	5 cut(s)	613, 704, 716, 813, 1212
Hpy8I	GTNNAC	1 cut(s)	919
Hpy99I	CGWCG	3 cut(s)	190, 476, 977
HpyAV	CCTTC	6 cut(s)	438, 625, 637, 838, 971, 1024
HpyCH4III	ACNGT	5 cut(s)	347, 464, 698, 710, 944
HpyCH4V	TGCA	3 cut(s)	4, 266, 919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 88, 546, 555, 1048
HpyF3I	CTNAG	4 cut(s)	203, 392, 789, 807
Hsp92II	CATG	3 cut(s)	799, 925, 1191
HspAI	GCGC	2 cut(s)	8, 261
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
LmnI	GCTCC	4 cut(s)	740, 752, 953, 955
Lsp1109I	GCAGC	2 cut(s)	250, 278
LweI	GCATC	1 cut(s)	709
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	7 cut(s)	276, 470, 611, 702, 714, 817, 1216
MboI	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
MboII	GAAGA	9 cut(s)	33, 410, 584, 587, 672, 1021, 1078, 1185, 1194
MfeI	CAATTG	4 cut(s)	151, 256, 677, 1128
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	3 cut(s)	764, 921, 1121
MlyI	GAGTC	4 cut(s)	494, 800, 955, 1175
MseI	TTAA	2 cut(s)	173, 987
MslI	CAYNNNNRTG	1 cut(s)	708
MspI	CCGG	2 cut(s)	871, 1053
MspR9I	CCNGG	2 cut(s)	871, 1053
MunI	CAATTG	4 cut(s)	151, 256, 677, 1128
MvnI	CGCG	2 cut(s)	8, 495
MwoI	GCNNNNNNNGC	5 cut(s)	16, 88, 546, 555, 1048
NciI	CCSGG	2 cut(s)	871, 1053
NdeII	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
NlaIII	CATG	3 cut(s)	799, 925, 1191
NlaIV	GGNNCC	1 cut(s)	957
NmeAIII	GCCGAG	2 cut(s)	623, 845
NmuCI	GTSAC	1 cut(s)	300
NspI	RCATGY	2 cut(s)	925, 1191
OliI	CACNNNNGTG	1 cut(s)	708
PciI	ACATGT	2 cut(s)	921, 1187
PcsI	WCGNNNNNNNCGW	4 cut(s)	12, 182, 576, 818
PfeI	GAWTC	2 cut(s)	755, 771
PkrI	GCNGC	6 cut(s)	265, 268, 528, 548, 560, 1044
Ple19I	CGATCG	1 cut(s)	471
PleI	GAGTC	4 cut(s)	494, 799, 955, 1175
PpsI	GAGTC	4 cut(s)	494, 799, 955, 1175
PscI	ACATGT	2 cut(s)	921, 1187
PsiI	TTATAA	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	764
PspFI	CCCAGC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	957
PspPI	GGNCC	3 cut(s)	682, 868, 1175
PstI	CTGCAG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	815
PvuI	CGATCG	1 cut(s)	471
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
RseI	CAYNNNNRTG	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	173, 987
SatI	GCNGC	6 cut(s)	264, 267, 527, 547, 559, 1043
Sau3AI	GATC	7 cut(s)	274, 468, 609, 700, 712, 815, 1214
Sau96I	GGNCC	3 cut(s)	682, 868, 1175
SchI	GAGTC	4 cut(s)	494, 800, 955, 1175
ScrFI	CCNGG	2 cut(s)	871, 1053
SduI	GDGCHC	3 cut(s)	764, 921, 1121
SfaNI	GCATC	1 cut(s)	709
SfcI	CTRYAG	3 cut(s)	264, 311, 321
SinI	GGWCC	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	708
SstI	GAGCTC	1 cut(s)	764
StyD4I	CCNGG	2 cut(s)	869, 1051
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	5 cut(s)	347, 464, 698, 710, 944
TaqII	GACCGA	1 cut(s)	699
TauI	GCSGC	4 cut(s)	529, 549, 561, 1045
TfiI	GAWTC	2 cut(s)	755, 771
Tru1I	TTAA	2 cut(s)	173, 987
Tru9I	TTAA	2 cut(s)	173, 987
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	2 cut(s)	263, 266
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	4 cut(s)	531, 1071, 1113, 1194
TspRI	CASTG	1 cut(s)	396
VneI	GTGCAC	1 cut(s)	917
VpaK11BI	GGWCC	1 cut(s)	682
XapI	RAATTY	2 cut(s)	456, 1069
XceI	RCATGY	2 cut(s)	925, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.