Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Reverse (-)

18855431 .. 18857146

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G203200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGATCTACTTGCATTCTATTAATGTCTCTTTGCAGCTTTTGACATTCTCTAAGCAGACACTACAGCTCCACACCCTCTTTCCCACTCTTAAACTATATCTCACTGTCCTCTGTTCCCTCTCTGTTTTTCTCCCTATAAATACTCTGTTTTTGCTCGGTAGATTTTGTGTTTTCTGCAACCCAAAAAGAAAGATGTATGTGAGGGAGAAGTCGCTCAAGGAAGACACATTTCCAAGGAGAAGAAGAAACCCATCTTTCTCTTCTTCTCTTCTCGACTCCATTTACCGCTCGATCGATGAATCGAACGGTGGAGATGGAGATCCTGGTTATGTCAGAGAATCAACCGTGATGAAGAAACAGAGCAGTTCTGCTAAGGGAGGCAGCGACAGAACCAATCTTCGTCGAGCTATTATGATTGAGAATTGGGTTGAGAAGCAGACTGTTCAAAGCTCCATGCTCTCGACTTCGGCTTCGAGCTCCTCAGAGTCGAGCTCAGGAGCTGCATTTTCGTCCTCTGAAACAGATTCAAGCTACAAGCCAAGAACAAAGCCGAAGCCGGTAGCGGCCTCTGCTCACTCCGAGAAGTACATGCAATTTCAGGAGAAGCCAAAGCATGAGAATGGCGGAGGTGGTGGGTTTACAAAGACTAAGCTCAGGGCTTTGAAAATCTATGGCGAGTTGAAGAAGGTGAAGCAACCCATTTCTCCGGGAGGTCGAATTGCCAGCTTCATCAACTCAATTTTCAATTCTGGGAACGTCAAGAAGGCCAAGATGTGTTACGTTGGAGCTGTGGAGGATGTGACGACCTCAGAACATGTTTCAAAGTCTGTTTCTTGCTCTTCTTCGTCTGCTTCCACTTTCTCAAGGTCTTGCTTGAGCAAGCCATCTTCAAGAGCCAAAAAACTAAGCAATGGCACCAAAAGGTCTGTGAGATTTTACCCAGTGAGTGTGATTCTTGGTGAGGAGGATTCCCAACCTTCAAGCCACCACAAATGTGTTTATGAAGAAGACCCAAGTTTAATGCCAAAACCCTCGTATCAAAAATTTGCAAGAGCTACTTTGTTGAAGGAAGACTTGACCACAGTAGGTCAAAATTTTGCTAGAGGGTTTTGTGATGATGGTGATGATGAAGAAAGTGATCATGATGCTGAGAGCTATTCAAGTTCTGATCTTTTTGAGCTTGATCACCCAGTTGGGATTGGAAGGTACAGGGAAGAACTTCCAGTGTATGAAACTACTAATTTCAGAACTAATCAAGCCATTGCCCAAGGCTTGATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

47.33

Weight (kDa)

9.22

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	914
AccBSI	CCGCTC	1 cut(s)	288
AciI	CCGC	3 cut(s)	286, 563, 624
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	1043, 1093
AfaI	GTAC	2 cut(s)	587, 1208
AflIII	ACRYGT	1 cut(s)	814
AjnI	CCWGG	1 cut(s)	322
AleI	CACNNNNGTG	1 cut(s)	993
Alw21I	GWGCWC	2 cut(s)	479, 494
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	564, 765
ApeKI	GCWGC	3 cut(s)	34, 381, 500
ApoI	RAATTY	2 cut(s)	1043, 1093
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	1218
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	4 cut(s)	700, 971, 1133, 1178
BaeI	ACNNNNGTAYC	2 cut(s)	1019, 1052
BanI	GGYRCC	1 cut(s)	914
BanII	GRGCYC	2 cut(s)	479, 494
BbsI	GAAGAC	3 cut(s)	228, 1014, 1077
Bbv12I	GWGCWC	2 cut(s)	479, 494
BbvI	GCAGC	3 cut(s)	46, 393, 487
BccI	CCATC	4 cut(s)	259, 308, 892, 1112
BciT130I	CCWGG	1 cut(s)	324
BclI	TGATCA	2 cut(s)	1138, 1183
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	1101
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	4 cut(s)	35, 382, 501, 564
BlsI	GCNGC	4 cut(s)	36, 383, 502, 565
Bme1390I	CCNGG	2 cut(s)	324, 708
BmiI	GGNNCC	1 cut(s)	916
BmrFI	CCNGG	2 cut(s)	324, 708
BmrI	ACTGGG	2 cut(s)	935, 1184
BmsI	GCATC	1 cut(s)	1135
BmuI	ACTGGG	2 cut(s)	935, 1184
BpiI	GAAGAC	3 cut(s)	228, 1014, 1077
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
Bpu10I	CCTNAGC	3 cut(s)	372, 493, 653
BpuEI	CTTGAG	3 cut(s)	200, 847, 895
BpuMI	CCSGG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	233, 1267
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	3 cut(s)	941, 1190, 1223
Bse3DI	GCAATG	2 cut(s)	916, 1260
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	233, 1267
BseGI	GGATG	1 cut(s)	802
BseJI	GATNNNNATC	1 cut(s)	318
BseMI	GCAATG	2 cut(s)	916, 1260
BseMII	CTCAG	5 cut(s)	495, 507, 667, 822, 1140
BseNI	ACTGG	3 cut(s)	941, 1190, 1223
BseRI	GAGGAG	2 cut(s)	469, 977
BseXI	GCAGC	3 cut(s)	46, 393, 487
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	566, 767
BshNI	GGYRCC	1 cut(s)	914
BshVI	ATCGAT	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	2 cut(s)	479, 494
BsiSI	CCGG	2 cut(s)	557, 707
BsmAI	GTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	566, 767
Bsp1286I	GDGCHC	2 cut(s)	479, 494
Bsp143I	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
BspACI	CCGC	3 cut(s)	286, 563, 624
BspANI	GGCC	2 cut(s)	566, 767
BspCNI	CTCAG	5 cut(s)	494, 506, 666, 821, 1141
BspDI	ATCGAT	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	1 cut(s)	916
BspPI	GGATC	1 cut(s)	314
BspQI	GCTCTTC	1 cut(s)	844
BspT107I	GGYRCC	1 cut(s)	914
BsrBI	CCGCTC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	916, 1260
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	3 cut(s)	941, 1190, 1223
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	2 cut(s)	233, 1267
BssMI	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
BssT1I	CCWWGG	2 cut(s)	233, 1267
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	5 cut(s)	106, 308, 346, 442, 1084
Bst6I	CTCTTC	3 cut(s)	265, 273, 844
BstC8I	GCNNGC	2 cut(s)	724, 881
BstDEI	CTNAG	9 cut(s)	51, 372, 481, 493, 648, 653, 808, 905, 1149
BstF5I	GGATG	1 cut(s)	802
BstKTI	GATC	6 cut(s)	6, 294, 322, 1141, 1171, 1186
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	1 cut(s)	569
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	2 cut(s)	592, 818
BstSCI	CCNGG	2 cut(s)	322, 706
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	46, 393, 487
BstV2I	GAAGAC	3 cut(s)	228, 1014, 1077
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	566, 767
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	802
BtsIMutI	CAGTG	3 cut(s)	102, 948, 1230
Cac8I	GCNNGC	2 cut(s)	724, 881
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	1141
Cfr10I	RCCGGY	1 cut(s)	556
ClaI	ATCGAT	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	586, 1207
CviAII	CATG	5 cut(s)	454, 589, 614, 815, 1142
CviQI	GTAC	2 cut(s)	586, 1207
DdeI	CTNAG	9 cut(s)	51, 372, 481, 493, 648, 653, 808, 905, 1149
DpnI	GATC	6 cut(s)	5, 293, 321, 1140, 1170, 1185
DpnII	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
Eam1104I	CTCTTC	3 cut(s)	265, 273, 844
EarI	CTCTTC	3 cut(s)	265, 273, 844
EciI	GGCGGA	1 cut(s)	639
Ecl136II	GAGCTC	2 cut(s)	477, 492
Eco130I	CCWWGG	2 cut(s)	233, 1267
Eco24I	GRGCYC	2 cut(s)	479, 494
Eco53kI	GAGCTC	2 cut(s)	477, 492
EcoICRI	GAGCTC	2 cut(s)	477, 492
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	233, 1267
EcoT38I	GRGCYC	2 cut(s)	479, 494
ErhI	CCWWGG	2 cut(s)	233, 1267
FaeI	CATG	5 cut(s)	457, 592, 617, 818, 1145
FalI	AAGNNNNNCTT	4 cut(s)	1042, 1074, 1058, 1090
FatI	CATG	5 cut(s)	453, 588, 613, 814, 1141
FbaI	TGATCA	2 cut(s)	1138, 1183
Fnu4HI	GCNGC	4 cut(s)	35, 382, 501, 564
FokI	GGATG	1 cut(s)	809
FriOI	GRGCYC	2 cut(s)	479, 494
Fsp4HI	GCNGC	4 cut(s)	35, 382, 501, 564
FspBI	CTAG	1 cut(s)	1101
GluI	GCNGC	4 cut(s)	35, 382, 501, 564
HaeIII	GGCC	2 cut(s)	566, 767
HapII	CCGG	2 cut(s)	557, 707
Hin1II	CATG	5 cut(s)	457, 592, 617, 818, 1145
HinfI	GANTC	7 cut(s)	275, 299, 338, 485, 524, 952, 968
HpaII	CCGG	2 cut(s)	557, 707
HphI	GGTGA	4 cut(s)	700, 971, 1133, 1178
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	7 cut(s)	335, 484, 517, 580, 811, 1168, 1247
Hpy188III	TCNNGA	7 cut(s)	272, 460, 495, 599, 760, 891, 1142
Hpy8I	GTNNAC	1 cut(s)	639
Hpy99I	CGWCG	1 cut(s)	405
HpyAV	CCTTC	5 cut(s)	679, 757, 987, 1060, 1197
HpyCH4III	ACNGT	5 cut(s)	106, 308, 346, 442, 1084
HpyCH4IV	ACGT	2 cut(s)	756, 780
HpyCH4V	TGCA	6 cut(s)	13, 34, 177, 503, 592, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	569
HpyF3I	CTNAG	9 cut(s)	51, 372, 481, 493, 648, 653, 808, 905, 1149
HpySE526I	ACGT	2 cut(s)	756, 780
Hsp92II	CATG	5 cut(s)	457, 592, 617, 818, 1145
Ksp22I	TGATCA	2 cut(s)	1138, 1183
Kzo9I	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
LguI	GCTCTTC	1 cut(s)	844
LmnI	GCTCC	5 cut(s)	72, 455, 482, 497, 785
Lsp1109I	GCAGC	3 cut(s)	46, 393, 487
LweI	GCATC	1 cut(s)	1135
MaeI	CTAG	1 cut(s)	1101
MaeII	ACGT	2 cut(s)	756, 780
MaeIII	GTNAC	2 cut(s)	776, 799
MalI	GATC	6 cut(s)	5, 293, 321, 1140, 1170, 1185
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	479, 494
MluCI	AATT	8 cut(s)	421, 593, 717, 738, 745, 1043, 1093, 1240
MlyI	GAGTC	2 cut(s)	269, 494
MmeI	TCCRAC	1 cut(s)	763
MroXI	GAANNNNTTC	1 cut(s)	1218
MseI	TTAA	3 cut(s)	21, 90, 1019
MslI	CAYNNNNRTG	2 cut(s)	618, 993
MspI	CCGG	2 cut(s)	557, 707
MspR9I	CCNGG	2 cut(s)	324, 708
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	569
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
NlaIII	CATG	5 cut(s)	457, 592, 617, 818, 1145
NlaIV	GGNNCC	1 cut(s)	916
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	2 cut(s)	592, 818
OliI	CACNNNNGTG	1 cut(s)	993
PagI	TCATGA	1 cut(s)	1141
PciI	ACATGT	1 cut(s)	814
PciSI	GCTCTTC	1 cut(s)	844
PctI	GAATGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	1218
PfeI	GAWTC	5 cut(s)	299, 338, 524, 952, 968
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	4 cut(s)	36, 383, 502, 565
Ple19I	CGATCG	1 cut(s)	294
PleI	GAGTC	2 cut(s)	269, 493
PpsI	GAGTC	2 cut(s)	269, 493
PscI	ACATGT	1 cut(s)	814
PshBI	ATTAAT	1 cut(s)	21
Psp124BI	GAGCTC	2 cut(s)	479, 494
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	319
PvuI	CGATCG	1 cut(s)	294
RsaI	GTAC	2 cut(s)	587, 1208
RsaNI	GTAC	2 cut(s)	586, 1207
RseI	CAYNNNNRTG	2 cut(s)	618, 993
SacI	GAGCTC	2 cut(s)	479, 494
SapI	GCTCTTC	1 cut(s)	844
SaqAI	TTAA	3 cut(s)	21, 90, 1019
SatI	GCNGC	4 cut(s)	35, 382, 501, 564
Sau3AI	GATC	6 cut(s)	3, 291, 319, 1138, 1168, 1183
SchI	GAGTC	2 cut(s)	269, 494
ScrFI	CCNGG	2 cut(s)	324, 708
SduI	GDGCHC	2 cut(s)	479, 494
SfaNI	GCATC	1 cut(s)	1135
SfcI	CTRYAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	618, 993
SmlI	CTYRAG	3 cut(s)	215, 862, 874
SmoI	CTYRAG	3 cut(s)	215, 862, 874
Sse9I	AATT	8 cut(s)	421, 593, 717, 738, 745, 1043, 1093, 1240
SsiI	CCGC	3 cut(s)	286, 563, 624
SspMI	CTAG	1 cut(s)	1101
SstI	GAGCTC	2 cut(s)	479, 494
StyD4I	CCNGG	2 cut(s)	322, 706
StyI	CCWWGG	2 cut(s)	233, 1267
TaaI	ACNGT	5 cut(s)	106, 308, 346, 442, 1084
TaiI	ACGT	2 cut(s)	759, 783
TaqI	TCGA	9 cut(s)	273, 290, 294, 302, 403, 461, 473, 488, 715
TasI	AATT	8 cut(s)	421, 593, 717, 738, 745, 1043, 1093, 1240
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	5 cut(s)	299, 338, 524, 952, 968
Tru1I	TTAA	3 cut(s)	21, 90, 1019
Tru9I	TTAA	3 cut(s)	21, 90, 1019
TscAI	CASTG	3 cut(s)	109, 948, 1230
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	3 cut(s)	34, 381, 500
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	6 cut(s)	312, 365, 718, 1017, 1143, 1245
TspRI	CASTG	3 cut(s)	109, 948, 1230
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	2 cut(s)	1043, 1093
XceI	RCATGY	2 cut(s)	592, 818
XmnI	GAANNNNTTC	1 cut(s)	1218
XspI	CTAG	1 cut(s)	1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.