Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

6964894 .. 6965961

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTATATGAGGGAGAGATCGTCTTTTCAGGAAGAGAAGTTCCCAGGAGGAGGAGGAGGAAGAAGGAGAAGAAACCCTTCTTTCTCTTCTTCTCTTCTCGACTCTATTTACCGCTCGATTGACGAATCGAACGGTGTCGATCCGGGCTTTGTCAGAGAGTCGAAGAAACAGAGCAGCTCTGTTTCCAAGCGTGAAGAGACTAAAGGAGGCAGCGGGAAGACCAATCTTCGCCGAGCCATGATGATCGAGAATTGGGTTGAGAGGCAAAGCGTTCATAGCTCTATGTTCACGAACTCGGCTTCGAGTTCTTCAGAGTCGAGCTCCGGAGCTGCATTTTCGTCTTCGGATCAAACAGAGTCGAGCTACAAAAGACGGTCGAAACAGAGTCCGGCAGTAGTGGTCTCTGTTCGCTCCGAGAATATGGAGAAGCCGAAAAGCGAGAGTGGAAGTGGAGGCGGGTTTACGAAGACGAAGCTTAGAGCTCTCAAAATCTACGGCGAATTGAAGAAAGCCAAGCAACCCATTTCGCCGGGAGGGAAAATTGCGAGCTTCATCAACTCGATTTTCAATTCCGGGAACGTCAAGAAAGCCAAGATGTGCTATGTTGGAGCTGTAGAAGACGTGAGTACTTCAGAGCATGTAACCAAGTCTACTTACTCTTCTTCTTCGGCTTCAACTTTTTCAAGGTCTTGTTTGAGCAAACCTTCTTCAAGGTCCAAGAAATCGAGCAATGGCAACAAAAGGTCCGTGAGGTTTTACCCAATAAGTGTGATTCTTGGTGAAGATGACACTCAAATTTCAAGCCATAAATGTGTTTATGAACAAGATCCTAGCTTGATGCCAAAACCCACATTTCAAAAATTTGCAAGAACTCCAGGTCAAAATTCCCGGAGAAGCTTATGTGAAGATGGTGATGATGAGGAAAGTGATGCTGAGAGTTATTCAAGTTCGGATCTTTTCGAGCTCAATCAACCAGTTGGGATTGGTAGATATAGAGAAGAACTTCCTGTTTATGAAACCACTAATGTCAGAACCAATCAAGCCATTGCCAAGGGCTTGATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

38.98

Weight (kDa)

9.57

Isoelectric Point (pI)

76.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	650
AccIII	TCCGGA	1 cut(s)	323
AciI	CCGC	3 cut(s)	112, 213, 456
AclWI	GGATC	4 cut(s)	134, 354, 821, 960
AcsI	RAATTY	3 cut(s)	795, 860, 883
AcuI	CTGAAG	2 cut(s)	294, 615
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	8 cut(s)	505, 568, 675, 684, 711, 801, 857, 945
AjiI	CACGTC	1 cut(s)	622
AjnI	CCWGG	2 cut(s)	43, 874
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
Alw21I	GWGCWC	3 cut(s)	323, 484, 966
Alw26I	GTCTC	2 cut(s)	191, 406
AlwI	GGATC	4 cut(s)	134, 354, 821, 960
Aor13HI	TCCGGA	1 cut(s)	323
ApeKI	GCWGC	3 cut(s)	174, 210, 329
ApoI	RAATTY	3 cut(s)	795, 860, 883
Asp700I	GAANNNNTTC	2 cut(s)	76, 1002
AspS9I	GGNCC	2 cut(s)	714, 744
AsuC2I	CCSGG	4 cut(s)	144, 531, 574, 889
AsuHPI	GGTGA	2 cut(s)	791, 923
AvaII	GGWCC	2 cut(s)	714, 744
BanII	GRGCYC	3 cut(s)	323, 484, 966
BbsI	GAAGAC	4 cut(s)	224, 333, 473, 624
Bbv12I	GWGCWC	3 cut(s)	323, 484, 966
BbvI	GCAGC	3 cut(s)	186, 222, 316
BccI	CCATC	1 cut(s)	902
BceAI	ACGGC	1 cut(s)	511
BciT130I	CCWGG	2 cut(s)	45, 876
BcnI	CCSGG	4 cut(s)	144, 531, 574, 889
BcoDI	GTCTC	2 cut(s)	191, 406
BfaI	CTAG	1 cut(s)	831
BfmI	CTRYAG	1 cut(s)	612
BisI	GCNGC	3 cut(s)	175, 211, 330
BlsI	GCNGC	3 cut(s)	176, 212, 331
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	6 cut(s)	45, 144, 531, 574, 876, 889
Bme18I	GGWCC	2 cut(s)	714, 744
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	2 cut(s)	714, 744
BmrFI	CCNGG	6 cut(s)	45, 144, 531, 574, 876, 889
BmsI	GCATC	2 cut(s)	828, 919
BpiI	GAAGAC	4 cut(s)	224, 333, 473, 624
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	1 cut(s)	858
BpuMI	CCSGG	4 cut(s)	144, 531, 574, 889
BsaI	GGTCTC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	43, 1050
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	974
Bse3DI	GCAATG	2 cut(s)	736, 1044
BseAI	TCCGGA	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	45, 876
BseDI	CCNNGG	2 cut(s)	43, 1050
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	2 cut(s)	736, 1044
BseMII	CTCAG	1 cut(s)	924
BseNI	ACTGG	1 cut(s)	974
BseRI	GAGGAG	3 cut(s)	63, 66, 69
BseXI	GCAGC	3 cut(s)	186, 222, 316
Bsh1285I	CGRYCG	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	377
BsiHKAI	GWGCWC	3 cut(s)	323, 484, 966
BsiSI	CCGG	6 cut(s)	143, 324, 389, 530, 573, 889
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	191, 406
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	3 cut(s)	323, 484, 966
Bsp13I	TCCGGA	1 cut(s)	323
Bsp143I	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
BspACI	CCGC	3 cut(s)	112, 213, 456
BspCNI	CTCAG	1 cut(s)	925
BspEI	TCCGGA	1 cut(s)	323
BspPI	GGATC	4 cut(s)	134, 354, 821, 960
BspTNI	GGTCTC	1 cut(s)	406
BsrBI	CCGCTC	1 cut(s)	114
BsrDI	GCAATG	2 cut(s)	736, 1044
BsrI	ACTGG	1 cut(s)	974
BssECI	CCNNGG	2 cut(s)	43, 1050
BssMI	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
BssT1I	CCWWGG	1 cut(s)	1050
Bst2UI	CCWGG	2 cut(s)	45, 876
Bst4CI	ACNGT	2 cut(s)	134, 375
Bst6I	CTCTTC	5 cut(s)	27, 91, 99, 189, 664
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	2 cut(s)	476, 933
BstKTI	GATC	6 cut(s)	20, 142, 246, 349, 829, 955
BstMAI	GTCTC	2 cut(s)	191, 406
BstMBI	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
BstMCI	CGRYCG	1 cut(s)	377
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstNI	CCWGG	2 cut(s)	45, 876
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	6 cut(s)	43, 142, 529, 572, 874, 887
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	186, 222, 316
BstV2I	GAAGAC	4 cut(s)	224, 333, 473, 624
BstX2I	RGATCY	2 cut(s)	826, 952
BstYI	RGATCY	2 cut(s)	826, 952
BtrI	CACGTC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	547
Cfr13I	GGNCC	2 cut(s)	714, 744
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	2 cut(s)	238, 638
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	2 cut(s)	476, 933
DpnI	GATC	6 cut(s)	19, 141, 245, 348, 828, 954
DpnII	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
Eam1104I	CTCTTC	5 cut(s)	27, 91, 99, 189, 664
EarI	CTCTTC	5 cut(s)	27, 91, 99, 189, 664
Ecl136II	GAGCTC	3 cut(s)	321, 482, 964
Eco130I	CCWWGG	1 cut(s)	1050
Eco24I	GRGCYC	3 cut(s)	323, 484, 966
Eco31I	GGTCTC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	714, 744
Eco53kI	GAGCTC	3 cut(s)	321, 482, 964
Eco57I	CTGAAG	2 cut(s)	294, 615
EcoICRI	GAGCTC	3 cut(s)	321, 482, 964
EcoRII	CCWGG	2 cut(s)	43, 874
EcoT14I	CCWWGG	1 cut(s)	1050
EcoT38I	GRGCYC	3 cut(s)	323, 484, 966
ErhI	CCWWGG	1 cut(s)	1050
FaeI	CATG	2 cut(s)	241, 641
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FatI	CATG	2 cut(s)	237, 637
FauI	CCCGC	2 cut(s)	206, 449
FblI	GTMKAC	1 cut(s)	650
Fnu4HI	GCNGC	3 cut(s)	175, 211, 330
FriOI	GRGCYC	3 cut(s)	323, 484, 966
Fsp4HI	GCNGC	3 cut(s)	175, 211, 330
FspBI	CTAG	1 cut(s)	831
GluI	GCNGC	3 cut(s)	175, 211, 330
GsuI	CTGGAG	1 cut(s)	858
HapII	CCGG	6 cut(s)	143, 324, 389, 530, 573, 889
Hin1II	CATG	2 cut(s)	241, 641
HindIII	AAGCTT	2 cut(s)	473, 895
HinfI	GANTC	7 cut(s)	101, 125, 158, 314, 356, 385, 772
HpaII	CCGG	6 cut(s)	143, 324, 389, 530, 573, 889
HphI	GGTGA	2 cut(s)	791, 923
Hpy166II	GTNNAC	3 cut(s)	288, 462, 651
Hpy188I	TCNGA	7 cut(s)	155, 313, 346, 415, 634, 952, 1031
Hpy188III	TCNNGA	6 cut(s)	29, 98, 247, 289, 324, 583
Hpy8I	GTNNAC	3 cut(s)	288, 462, 651
HpyAV	CCTTC	3 cut(s)	57, 87, 714
HpyCH4III	ACNGT	2 cut(s)	134, 375
HpyCH4IV	ACGT	2 cut(s)	579, 621
HpyCH4V	TGCA	2 cut(s)	332, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	2 cut(s)	476, 933
HpySE526I	ACGT	2 cut(s)	579, 621
Hsp92II	CATG	2 cut(s)	241, 641
Kpn2I	TCCGGA	1 cut(s)	323
Kzo9I	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
LmnI	GCTCC	4 cut(s)	326, 326, 416, 608
Lsp1109I	GCAGC	3 cut(s)	186, 222, 316
LweI	GCATC	2 cut(s)	828, 919
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	2 cut(s)	579, 621
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	6 cut(s)	19, 141, 245, 348, 828, 954
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
MflI	RGATCY	2 cut(s)	826, 952
MhlI	GDGCHC	3 cut(s)	323, 484, 966
MluCI	AATT	7 cut(s)	250, 500, 540, 568, 795, 860, 883
MlyI	GAGTC	5 cut(s)	95, 167, 323, 365, 394
MmeI	TCCRAC	1 cut(s)	586
MroI	TCCGGA	1 cut(s)	323
MroXI	GAANNNNTTC	2 cut(s)	76, 1002
MslI	CAYNNNNRTG	1 cut(s)	810
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	6 cut(s)	143, 324, 389, 530, 573, 889
MspR9I	CCNGG	6 cut(s)	45, 144, 531, 574, 876, 889
MvaI	CCWGG	2 cut(s)	45, 876
MwoI	GCNNNNNNNGC	1 cut(s)	276
NciI	CCSGG	4 cut(s)	144, 531, 574, 889
NdeII	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
NlaIII	CATG	2 cut(s)	241, 641
NmeAIII	GCCGAG	2 cut(s)	257, 275
NspI	RCATGY	1 cut(s)	641
PdmI	GAANNNNTTC	2 cut(s)	76, 1002
PfeI	GAWTC	2 cut(s)	125, 772
PfoI	TCCNGGA	2 cut(s)	572, 887
PkrI	GCNGC	3 cut(s)	176, 212, 331
PleI	GAGTC	5 cut(s)	95, 166, 322, 364, 393
PpsI	GAGTC	5 cut(s)	95, 166, 322, 364, 393
Psp124BI	GAGCTC	3 cut(s)	323, 484, 966
Psp6I	CCWGG	2 cut(s)	43, 874
PspGI	CCWGG	2 cut(s)	43, 874
PspPI	GGNCC	2 cut(s)	714, 744
PsuI	RGATCY	2 cut(s)	826, 952
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	1 cut(s)	810
SacI	GAGCTC	3 cut(s)	323, 484, 966
SatI	GCNGC	3 cut(s)	175, 211, 330
Sau3AI	GATC	6 cut(s)	17, 139, 243, 346, 826, 952
Sau96I	GGNCC	2 cut(s)	714, 744
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	5 cut(s)	95, 167, 323, 365, 394
ScrFI	CCNGG	6 cut(s)	45, 144, 531, 574, 876, 889
SduI	GDGCHC	3 cut(s)	323, 484, 966
SfaNI	GCATC	2 cut(s)	828, 919
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	2 cut(s)	714, 744
SmiMI	CAYNNNNRTG	1 cut(s)	810
Sse9I	AATT	7 cut(s)	250, 500, 540, 568, 795, 860, 883
SsiI	CCGC	3 cut(s)	112, 213, 456
SspMI	CTAG	1 cut(s)	831
SstI	GAGCTC	3 cut(s)	323, 484, 966
StyD4I	CCNGG	6 cut(s)	43, 142, 529, 572, 874, 887
StyI	CCWWGG	1 cut(s)	1050
TaaI	ACNGT	2 cut(s)	134, 375
TaiI	ACGT	2 cut(s)	582, 624
TasI	AATT	7 cut(s)	250, 500, 540, 568, 795, 860, 883
TatI	WGTACW	1 cut(s)	626
TfiI	GAWTC	2 cut(s)	125, 772
TseI	GCWGC	3 cut(s)	174, 210, 329
TspDTI	ATGAA	4 cut(s)	263, 541, 834, 1029
TspGWI	ACGGA	1 cut(s)	736
VpaK11BI	GGWCC	2 cut(s)	714, 744
XapI	RAATTY	3 cut(s)	795, 860, 883
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	650
XmnI	GAANNNNTTC	2 cut(s)	76, 1002
XspI	CTAG	1 cut(s)	831
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.