Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004302

Physical Location & Seq

Genomic Coordinates Forward (+)

3349651 .. 3349968

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0042700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAAAAAGGTGTAAAATGTTTCTTTTGTGAGTACGTGAACACTGGGGATCAGAAAGGAGATGTACAGCACTTGCAGAGCCTGCATGATAAGGTCCAGTGTTGTGTCTGCCATAGCTACTATGATTGGAACCACATGGCTCGGTTGGAGCAGCACTTCAAGGATAACCGTGATCACTGCCGCACTTTCATGTTCTGTCACAAGACAAATTGCCTCATTCGTATCTATCCAAAAGGTGCTCACAAGTGCATTAAGCCATTCCAACAGAAGCCAGTGGATGGTGAAGGAGCCAGCGGCACTTCCAACCCGACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

8.38

Isoelectric Point (pI)

24.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42800
fragaria_vesca	FvH4_1g08230 FvH4_2g31260
malus_domestica	MD02G1086600.v1.1 MD08G1069700.v1.1 MD15G1052300.v1.1 MD15G1213800.v1.1
prunus_persica	Prupe.1G406300_v2.0.a1 Prupe.7G203200_v2.0.a1
pyrus_communis	pycom02g06970 pycom08g05770 pycom08g05780 pycom15g19000
rosa_chinensis	RchiOBHm_Chr2g0094281 RchiOBHm_Chr6g0311541
rosa_laevigata	RLG00000010395 RLG00000016473
rosa_multiflora	Rmu_co8456551.1_g000001 Rmu_co8514191.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147300 Rroxscaffold_7G00157520
rosa_rugosa	Rorug02G0042700 Rorug06G0389600
rosa_samantha	Rh2AG090400 Rh2BG090300 Rh2CG092800 Rh2DG089300 Rh6AG504500 Rh6BG515200 Rh6CG521000 Rh6DG507000
rosa_wichuraiana	Rw6G043930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	278
AciI	CCGC	2 cut(s)	181, 294
AclWI	GGATC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	35, 66
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	272
BclI	TGATCA	1 cut(s)	172
BisI	GCNGC	3 cut(s)	152, 181, 295
BlsI	GCNGC	3 cut(s)	153, 182, 296
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	131, 289
BmrI	ACTGGG	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	54
BsaAI	YACGTR	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	3 cut(s)	49, 97, 272
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	49, 97, 272
BseXI	GCAGC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	49, 172
BspACI	CCGC	2 cut(s)	181, 294
BspLI	GGNNCC	2 cut(s)	131, 289
BspPI	GGATC	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	49, 97, 272
BssMI	GATC	2 cut(s)	49, 172
Bst4CI	ACNGT	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstAUI	TGTACA	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	83, 292
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	52, 175
BstMBI	GATC	2 cut(s)	49, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	4 cut(s)	42, 104, 175, 279
Cac8I	GCNNGC	2 cut(s)	83, 292
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	34, 65
CviAII	CATG	3 cut(s)	86, 136, 190
CviJI	RGCY	6 cut(s)	81, 117, 140, 256, 271, 290
CviKI_1	RGCY	6 cut(s)	81, 117, 140, 256, 271, 290
CviQI	GTAC	2 cut(s)	34, 65
DpnI	GATC	2 cut(s)	51, 174
DpnII	GATC	2 cut(s)	49, 172
Eco47I	GGWCC	1 cut(s)	94
FaeI	CATG	3 cut(s)	89, 139, 193
FaiI	YATR	5 cut(s)	87, 114, 123, 137, 191
FatI	CATG	3 cut(s)	85, 135, 189
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	152, 181, 295
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	152, 181, 295
GluI	GCNGC	3 cut(s)	152, 181, 295
Hin1II	CATG	3 cut(s)	89, 139, 193
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	54
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	76, 85, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	89, 139, 193
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	49, 172
LmnI	GCTCC	2 cut(s)	148, 287
LpnPI	CCDG	5 cut(s)	30, 95, 110, 285, 304
Lsp1109I	GCAGC	1 cut(s)	163
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	51, 174
MboI	GATC	2 cut(s)	49, 172
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	126, 286
MnlI	CCTC	1 cut(s)	224
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	49, 172
NlaIII	CATG	3 cut(s)	89, 139, 193
NlaIV	GGNNCC	2 cut(s)	131, 289
NmuCI	GTSAC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	153, 182, 296
Ppu21I	YACGTR	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	131, 289
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	82
RsaI	GTAC	2 cut(s)	35, 66
RsaNI	GTAC	2 cut(s)	34, 65
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	152, 181, 295
Sau3AI	GATC	2 cut(s)	49, 172
Sau96I	GGNCC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	5 cut(s)	13, 39, 96, 119, 238
SinI	GGWCC	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	2 cut(s)	181, 294
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	39
TasI	AATT	1 cut(s)	208
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	2 cut(s)	183, 297
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	4 cut(s)	49, 104, 182, 279
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	178
TspRI	CASTG	4 cut(s)	49, 104, 182, 279
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.