Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

16460103 .. 16461407

Gene Structure 1305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGACTATTAAAAGTTTGCTTTCAGATATTGAGAGAGAAGAAAGAAATGTGCATAAAGCTATCAAAGACTCGGTAAAGCGGAATGATTTGGTCACTGCTAAGGCACTTGCTAGGGAAATAGTGAGTTCTAGAAGAACGGTTAAGCGGCTATACGAGAATAAAGCGCAGGTGAATTCTATTTCAATGCATCTTGGGGAGAGTATTGCTACTGCGGTAACTGTTGGGAATCTTTCGAAGAGTGGTGAGGTTATGAAGCTTGTTAATAGTCTAATGAAAGCTCCAGAGATTGCTGTGACAATGCAGGCATTTAGCAAAGAGATGACCAAGACTGGGGTTATTGAAGAGTTTGTGAGTGATGCTGTGGATAATGCCTTAGATTCTGAGGATATTGAAGAGGAGATCGAGGAAGAGGTTGATAAGGTATTGACTGCCATAGCAGGAGAGACTGCAGCTGAGCTCCCGGAAGCAGTTAGGAAGCAAAAGATGAATGTTCCAGCTCAAAAGGCGGAAACTTTACACGGGGAAGATGCAATTGTAGAAGGAGTTGATGCTGAAGAAGAACTAGAGGCCATTAGATATCGGCTAGCCAATGTTAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

200

Amino Acids

22.04

Weight (kDa)

4.92

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	8 - 158	2.9e-25	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	157
AciI	CCGC	4 cut(s)	79, 145, 212, 506
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	183, 341, 392
AluBI	AGCT	6 cut(s)	59, 256, 278, 452, 457, 497
AluI	AGCT	6 cut(s)	59, 256, 278, 452, 457, 497
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	437
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	2 cut(s)	181, 254
AsuII	TTCGAA	1 cut(s)	233
AsuNHI	GCTAGC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	461
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	4 cut(s)	111, 129, 563, 584
BfmI	CTRYAG	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	2 cut(s)	146, 450
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	2 cut(s)	147, 451
Bme1390I	CCNGG	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	4 cut(s)	196, 346, 517, 538
BmtI	GCTAGC	1 cut(s)	587
BmuI	ACTGGG	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	372, 444
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	461
BshFI	GGCC	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	399, 596
Bsp1720I	GCTNAGC	1 cut(s)	453
BspACI	CCGC	4 cut(s)	79, 145, 212, 506
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	2 cut(s)	373, 445
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	587
BspT104I	TTCGAA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	2 cut(s)	399, 596
Bst4CI	ACNGT	2 cut(s)	139, 220
Bst6I	CTCTTC	4 cut(s)	230, 336, 387, 402
BstBI	TTCGAA	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	303, 585
BstDEI	CTNAG	4 cut(s)	99, 373, 381, 453
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	402, 599
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	399, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	303, 585
CfoI	GCGC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	99, 373, 381, 453
DpnI	GATC	2 cut(s)	401, 598
DpnII	GATC	2 cut(s)	399, 596
Eam1104I	CTCTTC	4 cut(s)	230, 336, 387, 402
EarI	CTCTTC	4 cut(s)	230, 336, 387, 402
EciI	GGCGGA	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	573
EcoICRI	GAGCTC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	459
FaiI	YATR	5 cut(s)	54, 151, 251, 434, 601
Fnu4HI	GCNGC	2 cut(s)	146, 450
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	146, 450
FspBI	CTAG	4 cut(s)	111, 129, 563, 584
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	2 cut(s)	146, 450
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	1 cut(s)	461
HhaI	GCGC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	3 cut(s)	68, 226, 377
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	181, 254
Hpy188I	TCNGA	2 cut(s)	25, 382
Hpy188III	TCNNGA	2 cut(s)	129, 281
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	2 cut(s)	139, 220
HpyCH4V	TGCA	5 cut(s)	52, 187, 301, 449, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	4 cut(s)	99, 373, 381, 453
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	399, 596
LmnI	GCTCC	2 cut(s)	283, 462
LpnPI	CCDG	7 cut(s)	152, 287, 294, 315, 423, 474, 507
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	4 cut(s)	196, 346, 517, 538
MaeI	CTAG	4 cut(s)	111, 129, 563, 584
MaeIII	GTNAC	3 cut(s)	91, 214, 292
MalI	GATC	2 cut(s)	401, 598
MboI	GATC	2 cut(s)	399, 596
MboII	GAAGA	9 cut(s)	50, 144, 247, 353, 404, 419, 536, 566, 569
MfeI	CAATTG	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	2 cut(s)	172, 531
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	6 cut(s)	238, 376, 388, 397, 403, 559
Mph1103I	ATGCAT	1 cut(s)	189
MseI	TTAA	3 cut(s)	9, 141, 261
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	461
MunI	CAATTG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	2 cut(s)	399, 596
NheI	GCTAGC	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	91, 292
NsiI	ATGCAT	1 cut(s)	189
NspV	TTCGAA	1 cut(s)	233
PaqCI	CACCTGC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	226, 377
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	147, 451
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	459
PstI	CTGCAG	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	9, 141, 261
SatI	GCNGC	2 cut(s)	146, 450
Sau3AI	GATC	2 cut(s)	399, 596
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	4 cut(s)	196, 346, 517, 538
SfcI	CTRYAG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	233
Sse9I	AATT	2 cut(s)	172, 531
SsiI	CCGC	4 cut(s)	79, 145, 212, 506
SspMI	CTAG	4 cut(s)	111, 129, 563, 584
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	139, 220
TaqI	TCGA	2 cut(s)	233, 402
TasI	AATT	2 cut(s)	172, 531
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	226, 377
Tru1I	TTAA	3 cut(s)	9, 141, 261
Tru9I	TTAA	3 cut(s)	9, 141, 261
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	91, 292
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	2 cut(s)	91, 292
TspDTI	ATGAA	3 cut(s)	266, 287, 500
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	172
XbaI	TCTAGA	1 cut(s)	128
XspI	CTAG	4 cut(s)	111, 129, 563, 584
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.