Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

7681234 .. 7682949

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGAGAGTGATGAACATCATAAAGCCAAAACCTGATCCCAAACAACTGTTGCGTGATTGGCAACGCAAATTACGTCAGGAGTGTCGTAACATCGAACGCCAAATCCGAGATATACAGAAAGAAGAGAGAAATGTACAGAAAGCTATTAAAGAAGCTGCAAAGAGGAATGATATGGTCTCTGCTAAGGCACTTGCTAAGGAAATTGTGAGTTCGAGAAGAACAGTGAACCGGTTATATGAGAATAAGGCACAGATGAATTCTATATCAATGCATCTTGGAGAGAGTGTTGCGATTGCTCGAACAGTTGGGCATTTGTCGAAGAGCGCAGAGGTTATGAAGCTTGTTAATAATCTCATGAAGGCTCCACAGATGGCTGCAACAATGCAAGAATTTAGCAAAGAGATGACTAAGGCCGGAGTTATTGAAGAGTTTGTGAATGAGGCCATTGACAATGCTCTAGATTCAGAGGATATGGAAGAAGAGATTGATGAAGAGGTTGATAAAGTATTGACAGCAATTGCTGGAGAAACCGCTGCAGAGCTCCCAGTAGCTGTTAGGAAGGAGAGGATAAAGGTACCTGCACAGAAGGCGAGCACTTCACGTGAGGAAGAGGCAGTTGCAGAGGGTGTTGATGATGAGGAGGAATTGGAGGAAATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

229

Amino Acids

26.0

Weight (kDa)

5.58

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	21 - 188	3.3e-32	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	577
AciI	CCGC	1 cut(s)	534
AclWI	GGATC	2 cut(s)	32, 678
AcsI	RAATTY	3 cut(s)	259, 392, 657
AcvI	CACGTG	1 cut(s)	605
AfaI	GTAC	2 cut(s)	138, 579
AgeI	ACCGGT	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	428
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	6 cut(s)	146, 158, 343, 544, 554, 665
AluI	AGCT	6 cut(s)	146, 158, 343, 544, 554, 665
Alw21I	GWGCWC	3 cut(s)	546, 599, 667
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	32, 678
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	414, 444
ApeKI	GCWGC	3 cut(s)	158, 377, 536
ApoI	RAATTY	3 cut(s)	259, 392, 657
AsiGI	ACCGGT	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	577
BanII	GRGCYC	2 cut(s)	546, 667
BbrPI	CACGTG	1 cut(s)	605
Bbv12I	GWGCWC	3 cut(s)	546, 599, 667
BbvI	GCAGC	3 cut(s)	145, 364, 523
BccI	CCATC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	3 cut(s)	159, 378, 537
BlsI	GCNGC	3 cut(s)	160, 379, 538
BmiI	GGNNCC	2 cut(s)	366, 579
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	542
BplI	GAGNNNNNCTC	2 cut(s)	654, 686
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	2 cut(s)	186, 198
BsaAI	YACGTR	1 cut(s)	605
BsaBI	GATNNNNATC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	145, 364, 523
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	416, 446
BshNI	GGYRCC	1 cut(s)	577
BshTI	ACCGGT	1 cut(s)	231
BsiHKAI	GWGCWC	3 cut(s)	546, 599, 667
BsiSI	CCGG	2 cut(s)	232, 417
BsmAI	GTCTC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	416, 446
Bso31I	GGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	3 cut(s)	546, 599, 667
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	37, 683
BspACI	CCGC	1 cut(s)	534
BspANI	GGCC	2 cut(s)	416, 446
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	366, 579
BspMAI	CTGCAG	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	32, 678
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	231
BssMI	GATC	2 cut(s)	37, 683
Bst4CI	ACNGT	3 cut(s)	51, 226, 307
Bst6I	CTCTTC	6 cut(s)	120, 317, 423, 477, 489, 606
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	595, 672
BstDEI	CTNAG	3 cut(s)	186, 198, 411
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	2 cut(s)	40, 686
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	37, 683
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 590, 671
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	3 cut(s)	145, 364, 523
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	416, 446
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	595, 672
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	357
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	137, 578
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	1 cut(s)	358
CviQI	GTAC	2 cut(s)	137, 578
DdeI	CTNAG	3 cut(s)	186, 198, 411
DpnI	GATC	2 cut(s)	39, 685
DpnII	GATC	2 cut(s)	37, 683
Eam1104I	CTCTTC	6 cut(s)	120, 317, 423, 477, 489, 606
EarI	CTCTTC	6 cut(s)	120, 317, 423, 477, 489, 606
Ecl136II	GAGCTC	2 cut(s)	544, 665
Eco24I	GRGCYC	2 cut(s)	546, 667
Eco31I	GGTCTC	1 cut(s)	184
Eco53kI	GAGCTC	2 cut(s)	544, 665
Eco72I	CACGTG	1 cut(s)	605
EcoICRI	GAGCTC	2 cut(s)	544, 665
EcoRI	GAATTC	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	546, 667
FaeI	CATG	1 cut(s)	361
FaiI	YATR	9 cut(s)	23, 116, 176, 238, 240, 266, 338, 359, 476
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	159, 378, 537
FriOI	GRGCYC	2 cut(s)	546, 667
Fsp4HI	GCNGC	3 cut(s)	159, 378, 537
FspBI	CTAG	1 cut(s)	461
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	3 cut(s)	159, 378, 537
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	416, 446
HapII	CCGG	2 cut(s)	232, 417
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	2 cut(s)	232, 417
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	110, 469
Hpy188III	TCNNGA	4 cut(s)	80, 216, 358, 461
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	3 cut(s)	355, 556, 583
HpyCH4III	ACNGT	3 cut(s)	51, 226, 307
HpyCH4IV	ACGT	2 cut(s)	76, 604
HpyCH4V	TGCA	7 cut(s)	161, 274, 380, 388, 539, 584, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 590, 671
HpyF3I	CTNAG	3 cut(s)	186, 198, 411
HpySE526I	ACGT	2 cut(s)	76, 604
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	327
KpnI	GGTACC	1 cut(s)	581
Kzo9I	GATC	2 cut(s)	37, 683
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	2 cut(s)	370, 549
LpnPI	CCDG	7 cut(s)	48, 65, 245, 430, 510, 561, 594
Lsp1109I	GCAGC	3 cut(s)	145, 364, 523
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	2 cut(s)	76, 604
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	2 cut(s)	39, 685
MboI	GATC	2 cut(s)	37, 683
MboII	GAAGA	8 cut(s)	137, 231, 334, 440, 491, 494, 506, 623
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	683
MhlI	GDGCHC	3 cut(s)	546, 599, 667
MluCI	AATT	7 cut(s)	71, 204, 259, 392, 519, 647, 657
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	2 cut(s)	150, 348
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	2 cut(s)	232, 417
MunI	CAATTG	1 cut(s)	519
MwoI	GCNNNNNNNGC	3 cut(s)	61, 590, 671
NdeII	GATC	2 cut(s)	37, 683
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	2 cut(s)	366, 579
NmeAIII	GCCGAG	1 cut(s)	646
NsiI	ATGCAT	1 cut(s)	276
PagI	TCATGA	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	2 cut(s)	73, 106
PfeI	GAWTC	1 cut(s)	464
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	160, 379, 538
PmaCI	CACGTG	1 cut(s)	605
PmlI	CACGTG	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	605
Psp124BI	GAGCTC	2 cut(s)	546, 667
PspCI	CACGTG	1 cut(s)	605
PspN4I	GGNNCC	2 cut(s)	366, 579
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	683
RsaI	GTAC	2 cut(s)	138, 579
RsaNI	GTAC	2 cut(s)	137, 578
SacI	GAGCTC	2 cut(s)	546, 667
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	150, 348
SatI	GCNGC	3 cut(s)	159, 378, 537
Sau3AI	GATC	2 cut(s)	37, 683
SduI	GDGCHC	3 cut(s)	546, 599, 667
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	537
Sse9I	AATT	7 cut(s)	71, 204, 259, 392, 519, 647, 657
SsiI	CCGC	1 cut(s)	534
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	2 cut(s)	546, 667
TaaI	ACNGT	3 cut(s)	51, 226, 307
TaiI	ACGT	2 cut(s)	79, 607
TaqI	TCGA	5 cut(s)	96, 215, 301, 320, 661
TasI	AATT	7 cut(s)	71, 204, 259, 392, 519, 647, 657
TatI	WGTACW	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	2 cut(s)	150, 348
Tru9I	TTAA	2 cut(s)	150, 348
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	3 cut(s)	158, 377, 536
TspDTI	ATGAA	5 cut(s)	29, 272, 353, 374, 507
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	3 cut(s)	259, 392, 657
XbaI	TCTAGA	1 cut(s)	460
XspI	CTAG	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.