Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

13518693 .. 13520828

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g12890.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAACAAGGTCAAGAGCTTGTTGAAGCCGAAACCTAACCCGTCGGAGCAACTCAGAGAATGGCAGCGGCGCCTCCGCCATGAGTGCCGCAACATGGAGCGCCAAATCAGAGATATACAGAAAGAAGAGAATGCTGTTCATAAAACTATCAGAGAGGCTGCCAAGAGAAATGACATGGCTACAGCCAAGGCACTTGCAAAGGAAATTGTGATGTCGAGGAAAGTTGTGAATCGGCTTCATGAGAATAAGGCACAACTGAATTCGATATCTATGCACCTTGGAGAAAGTGTTGCACTTGCCCGTACCGTGGGTCATCTGTCAAAAAGTACAGAGGTTATGAAACTTGTGAATAACCTCATGAAAGCTCCAGATATGGCCATCACGATGCATGAATTTACCAAAGAAATCACCAAGGCTGGCGTGATTGAAGAATTCGTAGATGATGCTCTTGATACGGCATTAGATTCAGAAGATATAGAAGAGGAAACTGAAGAAGAAGTCGAAAGGGTCCTCAGTGAAATAGCTGGTGAGACGGCTGCACAGCTCCCAGAAGCTGTGCGGAAGGAGAGGACAAAGGTAGCAGCCCAGAGAGCCAGTGCGTCACAAGAAGAAGCTATAGCAGAGGGTGCAGACAATGAGGAAGAGTTGGAAGCACTGAGGGCGCGGCTTGCCCAAGTGAGATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

229

Amino Acids

25.77

Weight (kDa)

5.69

Isoelectric Point (pI)

59.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	1 cut(s)	664
AciI	CCGC	5 cut(s)	67, 76, 88, 559, 664
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	259, 392, 431
AcuI	CTGAAG	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	304, 328
AfiI	CCNNNNNNNGG	2 cut(s)	94, 307
AgsI	TTSAA	2 cut(s)	25, 428
AluBI	AGCT	6 cut(s)	18, 365, 524, 544, 554, 614
AluI	AGCT	6 cut(s)	18, 365, 524, 544, 554, 614
Alw26I	GTCTC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	64, 158, 536, 581
ApoI	RAATTY	3 cut(s)	259, 392, 431
AspLEI	GCGC	3 cut(s)	72, 102, 664
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	400, 539
AvaII	GGWCC	1 cut(s)	508
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	76, 145, 523, 593
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	2 cut(s)	471, 549
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BcoDI	GTCTC	1 cut(s)	524
BfmI	CTRYAG	2 cut(s)	180, 615
BfoI	RGCGCY	2 cut(s)	73, 103
BisI	GCNGC	7 cut(s)	65, 68, 88, 159, 537, 582, 665
BlsI	GCNGC	7 cut(s)	66, 69, 89, 160, 538, 583, 666
Bme18I	GGWCC	1 cut(s)	508
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	2 cut(s)	71, 509
BmsI	GCATC	2 cut(s)	375, 433
BpmI	CTGGAG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	186, 277, 306, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 307
Bse1I	ACTGG	1 cut(s)	594
BseDI	CCNNGG	4 cut(s)	186, 277, 306, 411
BseLI	CCNNNNNNNGG	2 cut(s)	94, 307
BseMII	CTCAG	3 cut(s)	67, 526, 647
BseNI	ACTGG	1 cut(s)	594
BseXI	GCAGC	4 cut(s)	76, 145, 523, 593
BsgI	GTGCAG	2 cut(s)	522, 648
Bsh1236I	CGCG	1 cut(s)	664
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	94, 307
BsmAI	GTCTC	1 cut(s)	524
BsmBI	CGTCTC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	680
BspACI	CCGC	5 cut(s)	67, 76, 88, 559, 664
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	66, 525, 648
BspFNI	CGCG	1 cut(s)	664
BspHI	TCATGA	2 cut(s)	238, 357
BspLI	GGNNCC	2 cut(s)	71, 509
BspT107I	GGYRCC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	4 cut(s)	186, 277, 306, 411
BssMI	GATC	1 cut(s)	680
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	3 cut(s)	186, 277, 411
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	3 cut(s)	120, 474, 636
BstACI	GRCGYC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	418, 669
BstDEI	CTNAG	3 cut(s)	53, 512, 656
BstDSI	CCRYGG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	664
BstH2I	RGCGCY	2 cut(s)	73, 103
BstHHI	GCGC	3 cut(s)	72, 102, 664
BstKTI	GATC	1 cut(s)	683
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	1 cut(s)	680
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 590, 626, 659, 668
BstSFI	CTRYAG	2 cut(s)	180, 615
BstUI	CGCG	1 cut(s)	664
BstV1I	GCAGC	4 cut(s)	76, 145, 523, 593
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	306
BtsIMutI	CAGTG	3 cut(s)	520, 601, 653
Cac8I	GCNNGC	2 cut(s)	418, 669
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	2 cut(s)	238, 357
CfoI	GCGC	3 cut(s)	72, 102, 664
Cfr13I	GGNCC	1 cut(s)	508
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	303, 327
CviAII	CATG	6 cut(s)	80, 94, 175, 239, 358, 389
CviQI	GTAC	2 cut(s)	303, 327
DdeI	CTNAG	3 cut(s)	53, 512, 656
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	1 cut(s)	682
DpnII	GATC	1 cut(s)	680
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	3 cut(s)	120, 474, 636
EarI	CTCTTC	3 cut(s)	120, 474, 636
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	3 cut(s)	186, 277, 411
Eco32I	GATATC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	2 cut(s)	259, 431
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	3 cut(s)	186, 277, 411
EcoT22I	ATGCAT	1 cut(s)	390
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	3 cut(s)	186, 277, 411
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	6 cut(s)	83, 97, 178, 242, 361, 392
FatI	CATG	6 cut(s)	79, 93, 174, 238, 357, 388
Fnu4HI	GCNGC	7 cut(s)	65, 68, 88, 159, 537, 582, 665
Fsp4HI	GCNGC	7 cut(s)	65, 68, 88, 159, 537, 582, 665
GlaI	GCGC	3 cut(s)	71, 101, 663
GluI	GCNGC	7 cut(s)	65, 68, 88, 159, 537, 582, 665
GsuI	CTGGAG	1 cut(s)	351
HaeII	RGCGCY	2 cut(s)	73, 103
HaeIII	GGCC	1 cut(s)	377
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	3 cut(s)	72, 102, 664
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	6 cut(s)	83, 97, 178, 242, 361, 392
Hin6I	GCGC	3 cut(s)	70, 100, 662
HinP1I	GCGC	3 cut(s)	70, 100, 662
HinfI	GANTC	2 cut(s)	229, 464
HphI	GGTGA	2 cut(s)	400, 539
Hpy188I	TCNGA	5 cut(s)	46, 56, 110, 152, 469
Hpy188III	TCNNGA	6 cut(s)	13, 239, 358, 368, 382, 449
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	197, 274, 293, 388, 539, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 590, 626, 659, 668
HpyF3I	CTNAG	3 cut(s)	53, 512, 656
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	6 cut(s)	83, 97, 178, 242, 361, 392
HspAI	GCGC	3 cut(s)	70, 100, 662
KasI	GGCGCC	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	680
LmnI	GCTCC	4 cut(s)	46, 97, 370, 549
LpnPI	CCDG	6 cut(s)	381, 402, 510, 561, 599, 607
Lsp1109I	GCAGC	4 cut(s)	76, 145, 523, 593
LweI	GCATC	2 cut(s)	375, 433
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	1 cut(s)	682
MboI	GATC	1 cut(s)	680
MboII	GAAGA	8 cut(s)	137, 440, 482, 491, 503, 506, 620, 653
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	4 cut(s)	204, 259, 392, 431
MluNI	TGGCCA	1 cut(s)	377
Mly113I	GGCGCC	1 cut(s)	70
MmeI	TCCRAC	2 cut(s)	24, 627
Mox20I	TGGCCA	1 cut(s)	377
Mph1103I	ATGCAT	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	136
MvnI	CGCG	1 cut(s)	664
MwoI	GCNNNNNNNGC	5 cut(s)	84, 590, 626, 659, 668
NarI	GGCGCC	1 cut(s)	70
NdeII	GATC	1 cut(s)	680
NlaIII	CATG	6 cut(s)	83, 97, 178, 242, 361, 392
NlaIV	GGNNCC	2 cut(s)	71, 509
NmuCI	GTSAC	1 cut(s)	600
NsiI	ATGCAT	1 cut(s)	390
PagI	TCATGA	2 cut(s)	238, 357
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	229, 464
PkrI	GCNGC	7 cut(s)	66, 69, 89, 160, 538, 583, 666
PluTI	GGCGCC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	71, 509
PspPI	GGNCC	1 cut(s)	508
PspPPI	RGGWCCY	1 cut(s)	508
PstNI	CAGNNNCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	304, 328
RsaNI	GTAC	2 cut(s)	303, 327
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	7 cut(s)	65, 68, 88, 159, 537, 582, 665
Sau3AI	GATC	1 cut(s)	680
Sau96I	GGNCC	1 cut(s)	508
SfaNI	GCATC	2 cut(s)	375, 433
SfcI	CTRYAG	2 cut(s)	180, 615
SfoI	GGCGCC	1 cut(s)	71
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	204, 259, 392, 431
SsiI	CCGC	5 cut(s)	67, 76, 88, 559, 664
SspDI	GGCGCC	1 cut(s)	69
StyI	CCWWGG	3 cut(s)	186, 277, 411
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	215, 263, 501
TasI	AATT	4 cut(s)	204, 259, 392, 431
TatI	WGTACW	1 cut(s)	326
TauI	GCSGC	3 cut(s)	70, 90, 667
TfiI	GAWTC	2 cut(s)	229, 464
TscAI	CASTG	3 cut(s)	520, 601, 660
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	4 cut(s)	64, 158, 536, 581
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	6 cut(s)	17, 128, 227, 353, 374, 405
TspRI	CASTG	3 cut(s)	520, 601, 660
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	3 cut(s)	259, 392, 431
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.