Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

24153630 .. 24156194

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCACACGCTTGGATTGGATCTTAAATCACAAGCGAGAGAGCATTATTGCTGTTCAGTATTCTTCATTTTCCTGAGAATTAGAAAGAGAGAAAACGAAGGGAACAAAATTAACGAACTAAAAAAGATGAACAAAGTCAAGAGCTTGTTAAAACCGAAACCCAACCCATCAGAGCAGCTGAGAGATTGGCAGAGACGACTTCGCCAAGAGTGCCGCAACCTCGAGCGCCAAATCAGAGATATTCAGAAAGAAGAGAAGGCTGTTCATAAATCCATTAGAGAGGCTGCCAAGAGAAATGACATGGGCACAGCCAAGGCACTTGCAAAGGAAATTTTGATGTCGAGGAAAGCTGTAAATCGCCTTCATGAAAATAAGGCCCAACTGAATTCAATATCAATGCACCTCGGAGAAAGTGTTGCACTTGCCCGTACTGTTGGTCATCTGTCAAAGAGTGCAGAGGTCATGAAACTTGTCAATAACCTCATGAAAGCTCCGGAAATGGCTGCCACAATGCAAGAATTTACCAAAGAAATAACCAAGGCTGGGGTGATTGAAGAATTTGTAAATGATGCTGTTGATTCGGCATTAGATTCGGAAGATATAGAAGAGGAAACCGAAGAAGAAGTTGAAAAGGTCCTGAGTGAAATAGCTGGTGAGACAGCTGCACAGCTTCCAGAAGCGGTCAGAAAGGAGAGGACAAAGGTAGCTGCCCAGGGAGCTAGTGCTTCACAAGACGAAGAAGCTATAGCAGAGGGTGCCGATGATGAGGAAGAGTTAGAAGAATTGAGGGCACGGCTTGCTCAAGTGAGATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

272

Amino Acids

30.7

Weight (kDa)

6.0

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	755
AccIII	TCCGGA	1 cut(s)	493
AciI	CCGC	2 cut(s)	214, 680
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	4 cut(s)	330, 385, 518, 557
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	390, 554, 629
AjnI	CCWGG	1 cut(s)	711
Alw26I	GTCTC	2 cut(s)	187, 650
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	493
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	5 cut(s)	175, 284, 503, 662, 707
ApoI	RAATTY	4 cut(s)	330, 385, 518, 557
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	376, 634
AsuHPI	GGTGA	2 cut(s)	559, 665
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	634
BaeGI	GKGCMC	2 cut(s)	308, 793
BanI	GGYRCC	1 cut(s)	755
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbvI	GCAGC	5 cut(s)	187, 271, 490, 649, 694
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	809
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BciT130I	CCWGG	1 cut(s)	713
BcoDI	GTCTC	2 cut(s)	187, 650
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	6 cut(s)	176, 214, 285, 504, 663, 708
BlsI	GCNGC	6 cut(s)	177, 215, 286, 505, 664, 709
Bme1390I	CCNGG	1 cut(s)	713
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	2 cut(s)	376, 634
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	786
BsaJI	CCNNGG	5 cut(s)	312, 403, 537, 711, 712
BsaWI	WCCGGW	1 cut(s)	493
BsaXI	ACNNNNNCTCC	2 cut(s)	399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	5 cut(s)	312, 403, 537, 711, 712
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	65, 170, 629
BseSI	GKGCMC	2 cut(s)	308, 793
BseXI	GCAGC	5 cut(s)	187, 271, 490, 649, 694
BseYI	CCCAGC	1 cut(s)	542
BsgI	GTGCAG	2 cut(s)	474, 648
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	755
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	187, 650
BsmBI	CGTCTC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	308, 793
Bsp13I	TCCGGA	1 cut(s)	493
Bsp143I	GATC	2 cut(s)	19, 809
BspACI	CCGC	2 cut(s)	214, 680
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	66, 171, 630
BspEI	TCCGGA	1 cut(s)	493
BspHI	TCATGA	3 cut(s)	364, 462, 483
BspLI	GGNNCC	1 cut(s)	757
BspPI	GGATC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	755
BssECI	CCNNGG	5 cut(s)	312, 403, 537, 711, 712
BssMI	GATC	2 cut(s)	19, 809
BssT1I	CCWWGG	2 cut(s)	312, 537
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	3 cut(s)	246, 600, 765
BstAPI	GCANNNNNTGC	2 cut(s)	755, 797
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	3 cut(s)	74, 179, 638
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	22, 812
BstMAI	GTCTC	2 cut(s)	187, 650
BstMBI	GATC	2 cut(s)	19, 809
BstMWI	GCNNNNNNNGC	4 cut(s)	210, 716, 755, 797
BstNI	CCWGG	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	711
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	2 cut(s)	308, 793
BstV1I	GCAGC	5 cut(s)	187, 271, 490, 649, 694
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	798
CciI	TCATGA	3 cut(s)	364, 462, 483
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	376, 634
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	4 cut(s)	301, 365, 463, 484
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	3 cut(s)	74, 179, 638
DpnI	GATC	2 cut(s)	21, 811
DpnII	GATC	2 cut(s)	19, 809
Eam1104I	CTCTTC	3 cut(s)	246, 600, 765
EarI	CTCTTC	3 cut(s)	246, 600, 765
Eco130I	CCWWGG	2 cut(s)	312, 537
Eco47I	GGWCC	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	312, 537
ErhI	CCWWGG	2 cut(s)	312, 537
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	4 cut(s)	304, 368, 466, 487
FaiI	YATR	7 cut(s)	267, 302, 366, 464, 485, 602, 746
FatI	CATG	4 cut(s)	300, 364, 462, 483
Fnu4HI	GCNGC	6 cut(s)	176, 214, 285, 504, 663, 708
Fsp4HI	GCNGC	6 cut(s)	176, 214, 285, 504, 663, 708
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	6 cut(s)	176, 214, 285, 504, 663, 708
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	1 cut(s)	494
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	304, 368, 466, 487
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	578, 590
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	2 cut(s)	559, 665
Hpy188I	TCNGA	6 cut(s)	172, 236, 246, 407, 595, 686
Hpy188III	TCNNGA	8 cut(s)	73, 139, 365, 463, 484, 494, 637, 674
HpyAV	CCTTC	3 cut(s)	92, 250, 371
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	7 cut(s)	4, 323, 400, 419, 455, 514, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	210, 716, 755, 797
HpyF3I	CTNAG	3 cut(s)	74, 179, 638
Hsp92II	CATG	4 cut(s)	304, 368, 466, 487
HspAI	GCGC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	19, 809
LmnI	GCTCC	2 cut(s)	496, 716
LpnPI	CCDG	8 cut(s)	86, 507, 528, 636, 650, 687, 698, 725
Lsp1109I	GCAGC	5 cut(s)	187, 271, 490, 649, 694
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	1 cut(s)	720
MalI	GATC	2 cut(s)	21, 811
MboI	GATC	2 cut(s)	19, 809
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	308, 793
MluCI	AATT	7 cut(s)	78, 108, 330, 385, 518, 557, 782
MroI	TCCGGA	1 cut(s)	493
MseI	TTAA	3 cut(s)	24, 111, 149
MspA1I	CMGCKG	2 cut(s)	178, 662
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	4 cut(s)	210, 716, 755, 797
NdeII	GATC	2 cut(s)	19, 809
NlaIII	CATG	4 cut(s)	304, 368, 466, 487
NlaIV	GGNNCC	1 cut(s)	757
PaeR7I	CTCGAG	1 cut(s)	221
PagI	TCATGA	3 cut(s)	364, 462, 483
PasI	CCCWGGG	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	578, 590
PkrI	GCNGC	6 cut(s)	177, 215, 286, 505, 664, 709
PpuMI	RGGWCCY	1 cut(s)	634
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	711
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	711
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	2 cut(s)	376, 634
PspPPI	RGGWCCY	1 cut(s)	634
PspXI	VCTCGAGB	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	2 cut(s)	178, 662
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	24, 111, 149
SatI	GCNGC	6 cut(s)	176, 214, 285, 504, 663, 708
Sau3AI	GATC	2 cut(s)	19, 809
Sau96I	GGNCC	2 cut(s)	376, 634
ScrFI	CCNGG	1 cut(s)	713
SduI	GDGCHC	2 cut(s)	308, 793
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	744
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	1 cut(s)	634
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	221, 801
SmoI	CTYRAG	2 cut(s)	221, 801
Sse9I	AATT	7 cut(s)	78, 108, 330, 385, 518, 557, 782
SsiI	CCGC	2 cut(s)	214, 680
SspMI	CTAG	1 cut(s)	720
StyD4I	CCNGG	1 cut(s)	711
StyI	CCWWGG	2 cut(s)	312, 537
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	2 cut(s)	222, 341
TasI	AATT	7 cut(s)	78, 108, 330, 385, 518, 557, 782
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	578, 590
Tru1I	TTAA	3 cut(s)	24, 111, 149
Tru9I	TTAA	3 cut(s)	24, 111, 149
TseI	GCWGC	5 cut(s)	175, 284, 503, 662, 707
TspDTI	ATGAA	7 cut(s)	55, 143, 254, 353, 381, 479, 500
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	4 cut(s)	330, 385, 518, 557
XhoI	CTCGAG	1 cut(s)	221
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.