Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013947.1

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

44165 .. 46157

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013947.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgggtagtttcctttccacgaagaaggagcttagatttttgagaatgaagaaattcaagagcatgttgaagcccaagccaaacccaacagagcaactcaaggattggcagagacgacttcgccaggagagccgcaacattgagcgccaaatcagagatcttgagagagaagagaaggtggtacagaaagctattagagaagctgcaaagagaaatgacatgggctcagcaaagtcacttgcaagggagattttggggtcgaggaaagctgtaagtcgtcttcaggagaataaagcccaactgaattcgatagcgatgcacctgggagaaagtgttgcacttgcccgtactgtgggtcatctatcaaagagtacagaggtcatgaagcttgttaatgaactcacgaaagctccagaaatggctgtcacaatgcaagaatttaccaaagaaataaccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

153

Amino Acids

17.68

Weight (kDa)

10.4

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	133
AcsI	RAATTY	3 cut(s)	53, 304, 437
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	3 cut(s)	183, 349, 373
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	58, 70
AjnI	CCWGG	2 cut(s)	123, 321
AluBI	AGCT	6 cut(s)	31, 191, 203, 269, 388, 410
AluI	AGCT	6 cut(s)	31, 191, 203, 269, 388, 410
Alw26I	GTCTC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	3 cut(s)	53, 304, 437
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	147
BanII	GRGCYC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	2 cut(s)	125, 323
BcoDI	GTCTC	1 cut(s)	106
BfoI	RGCGCY	1 cut(s)	148
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	2 cut(s)	133, 204
BlpI	GCTNAGC	1 cut(s)	226
BlsI	GCNGC	2 cut(s)	134, 205
Bme1390I	CCNGG	2 cut(s)	125, 323
BmrFI	CCNGG	2 cut(s)	125, 323
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	83, 182
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 394, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	125, 323
BseDI	CCNNGG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	157
Bsp1720I	GCTNAGC	1 cut(s)	226
BspACI	CCGC	1 cut(s)	133
BspCNI	CTCAG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	125, 323
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	32, 226
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	2 cut(s)	125, 323
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	123, 321
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BtgZI	GCGATG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	381
CfoI	GCGC	1 cut(s)	147
Csp6I	GTAC	3 cut(s)	182, 348, 372
CviAII	CATG	3 cut(s)	64, 220, 382
CviQI	GTAC	3 cut(s)	182, 348, 372
DdeI	CTNAG	2 cut(s)	32, 226
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	123, 321
EcoT38I	GRGCYC	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	3 cut(s)	67, 223, 385
FaiI	YATR	3 cut(s)	65, 221, 383
FatI	CATG	3 cut(s)	63, 219, 381
Fnu4HI	GCNGC	2 cut(s)	133, 204
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	133, 204
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	133, 204
GsuI	CTGGAG	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	148
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	67, 223, 385
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	386
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	6 cut(s)	58, 161, 284, 382, 403, 413
HpyAV	CCTTC	2 cut(s)	19, 169
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	206, 242, 319, 338, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	32, 226
Hsp92II	CATG	3 cut(s)	67, 223, 385
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	2 cut(s)	28, 415
LpnPI	CCDG	6 cut(s)	110, 137, 269, 308, 335, 426
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	234, 424
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	4 cut(s)	34, 61, 182, 272
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	3 cut(s)	53, 304, 437
MnlI	CCTC	2 cut(s)	255, 370
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	125, 323
MvaI	CCWGG	2 cut(s)	125, 323
MwoI	GCNNNNNNNGC	1 cut(s)	129
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	3 cut(s)	67, 223, 385
NmuCI	GTSAC	2 cut(s)	234, 424
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	134, 205
Psp6I	CCWGG	2 cut(s)	123, 321
PspGI	CCWGG	2 cut(s)	123, 321
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	183, 349, 373
RsaNI	GTAC	3 cut(s)	182, 348, 372
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	2 cut(s)	133, 204
Sau3AI	GATC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	125, 323
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	9 cut(s)	33, 180, 193, 205, 271, 324, 381, 390, 412
SfaNI	GCATC	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	98, 161
SmoI	CTYRAG	2 cut(s)	98, 161
Sse9I	AATT	3 cut(s)	53, 304, 437
SsiI	CCGC	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	123, 321
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	260, 308
TasI	AATT	3 cut(s)	53, 304, 437
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	2 cut(s)	234, 424
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	2 cut(s)	234, 424
TspDTI	ATGAA	3 cut(s)	62, 398, 411
XapI	RAATTY	3 cut(s)	53, 304, 437
XceI	RCATGY	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.