Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Reverse (-)

41397754 .. 41399202

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0297900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAACCAGACGTTGCTAGCGAATCACTGTACATTGCTCGACTTACTTGAAATTCCGCAGCTTATGGATACATGTGTGAGGAATGGAAATTATGATGAAGCTCTTGACTTAGAGACGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAAAAGTCAGGCAGACCACCCAATCTCTTCTTTCTCTGCTTCTTCAGAAACTTCGCTCAAACATTCAGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTCCGGGGACTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTCGCAAAAAATATGAGTACAGCAGTTGAAAACATTCACCTGAAAAGTGATGAATTTGAATTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

5.46

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dor1	PF04124	1 - 81	1.5e-30	Dor1-like family
Dor1	PF04124	80 - 119	6.5e-10	Dor1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	56
AcsI	RAATTY	2 cut(s)	51, 380
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	31, 346
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	50, 135, 308, 356, 386
AluBI	AGCT	4 cut(s)	61, 101, 130, 167
AluI	AGCT	4 cut(s)	61, 101, 130, 167
Alw26I	GTCTC	1 cut(s)	107
ApeKI	GCWGC	2 cut(s)	58, 173
ApoI	RAATTY	2 cut(s)	51, 380
Asp700I	GAANNNNTTC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	356
AsuNHI	GCTAGC	1 cut(s)	16
BaeI	ACNNNNGTAYC	2 cut(s)	60, 93
BbvI	GCAGC	2 cut(s)	70, 160
BccI	CCATC	1 cut(s)	304
BciVI	GTATCC	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	284
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	17, 275
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	59, 174
BlsI	GCNGC	2 cut(s)	60, 175
Bme1390I	CCNGG	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	284
BmtI	GCTAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	70, 160
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	29
BspACI	CCGC	1 cut(s)	56
BspOI	GCTAGC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	32
BsrGI	TGTACA	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	207, 303
BstAUI	TGTACA	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	18, 128
BstDEI	CTNAG	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	70, 160
BsuI	GTATCC	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	18, 128
Csp6I	GTAC	2 cut(s)	30, 345
CviAII	CATG	2 cut(s)	72, 139
CviJI	RGCY	7 cut(s)	61, 101, 130, 167, 173, 259, 274
CviKI_1	RGCY	7 cut(s)	61, 101, 130, 167, 173, 259, 274
CviQI	GTAC	2 cut(s)	30, 345
DdeI	CTNAG	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	207, 303
EarI	CTCTTC	2 cut(s)	207, 303
Eco57I	CTGAAG	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	75, 142
FaiI	YATR	7 cut(s)	65, 73, 93, 140, 161, 254, 341
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	2 cut(s)	71, 138
Fnu4HI	GCNGC	2 cut(s)	59, 174
Fsp4HI	GCNGC	2 cut(s)	59, 174
FspBI	CTAG	2 cut(s)	17, 275
GluI	GCNGC	2 cut(s)	59, 174
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	2 cut(s)	75, 142
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	2 cut(s)	11, 116
HpyCH4V	TGCA	4 cut(s)	126, 142, 176, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	2 cut(s)	11, 116
Hsp92II	CATG	2 cut(s)	75, 142
LpnPI	CCDG	5 cut(s)	20, 155, 169, 296, 380
Lsp1109I	GCAGC	2 cut(s)	70, 160
MaeI	CTAG	2 cut(s)	17, 275
MaeII	ACGT	2 cut(s)	11, 116
MboII	GAAGA	3 cut(s)	194, 209, 320
MluCI	AATT	4 cut(s)	51, 88, 380, 386
MnlI	CCTC	2 cut(s)	72, 304
MroXI	GAANNNNTTC	1 cut(s)	360
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	284
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	75, 142
NspI	RCATGY	1 cut(s)	75
PciI	ACATGT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	60, 175
PscI	ACATGT	1 cut(s)	71
RsaI	GTAC	2 cut(s)	31, 346
RsaNI	GTAC	2 cut(s)	30, 345
SatI	GCNGC	2 cut(s)	59, 174
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	7 cut(s)	14, 63, 103, 119, 132, 169, 369
Sse9I	AATT	4 cut(s)	51, 88, 380, 386
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	2 cut(s)	17, 275
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	2 cut(s)	14, 119
TaqI	TCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	51, 88, 380, 386
TatI	WGTACW	2 cut(s)	29, 344
TfiI	GAWTC	1 cut(s)	22
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	2 cut(s)	58, 173
TspDTI	ATGAA	3 cut(s)	17, 111, 393
TspRI	CASTG	1 cut(s)	32
XapI	RAATTY	2 cut(s)	51, 380
XceI	RCATGY	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	2 cut(s)	17, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.