Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001334.1

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

27782 .. 30243

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001334.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgaagaggagagaattagagatcttgttccaatcggcgtcgtgcatcagagatctagtttgtgcgttggagatccagttgcgaaacagcgttggagatttaattccagtcgccgacgtgatggacgagatggctggggtaattgaagagatcgtgaatgatagtcttgacacggcactagactcggaggacattgaagacgagatagaggaggtagttgataaggttttgactgccacagccggtgagactgctgcacaacttccagaagctgttaggaatgagaagttgaagcaacctgctagtgcccaagctgcagaggaggaagaagcaatagctgagggtgagggtgctgatgatgaggaagagttggaagaaatacgaaccagacttgccaaagtaagggtcataaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

4.11

Isoelectric Point (pI)

68.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	146, 197, 292
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	3 cut(s)	272, 314, 338
AluI	AGCT	3 cut(s)	272, 314, 338
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	254, 314
ArsI	GACNNNNNNTTYG	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	257, 356
BaeGI	GKGCMC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	241, 301
BccI	CCATC	2 cut(s)	115, 124
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	3 cut(s)	56, 179, 303
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	307
BglII	AGATCT	2 cut(s)	21, 52
BisI	GCNGC	2 cut(s)	255, 315
BlsI	GCNGC	2 cut(s)	256, 316
BmgBI	CACGTC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	76, 107
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	76, 107
BseRI	GAGGAG	3 cut(s)	22, 224, 335
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	241, 301
BseYI	CCCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmAI	GTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	21, 52, 72, 150
BspCNI	CTCAG	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	76, 107
BssAI	RCCGGY	1 cut(s)	242
BssMI	GATC	4 cut(s)	21, 52, 72, 150
BssNI	GRCGYC	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	141, 360
BstACI	GRCGYC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	339
BstKTI	GATC	4 cut(s)	24, 55, 75, 153
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	4 cut(s)	21, 52, 72, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	241, 301
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	3 cut(s)	21, 52, 72
BstYI	RGATCY	3 cut(s)	21, 52, 72
BtrI	CACGTC	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	307
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	242
CseI	GACGC	1 cut(s)	27
CviJI	RGCY	5 cut(s)	134, 242, 272, 314, 338
CviKI_1	RGCY	5 cut(s)	134, 242, 272, 314, 338
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	4 cut(s)	23, 54, 74, 152
DpnII	GATC	4 cut(s)	21, 52, 72, 150
Eam1104I	CTCTTC	2 cut(s)	141, 360
EarI	CTCTTC	2 cut(s)	141, 360
FaiI	YATR	1 cut(s)	410
Fnu4HI	GCNGC	2 cut(s)	255, 315
Fsp4HI	GCNGC	2 cut(s)	255, 315
FspBI	CTAG	3 cut(s)	56, 179, 303
GluI	GCNGC	2 cut(s)	255, 315
GsaI	CCCAGC	1 cut(s)	138
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	38
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	257, 356
Hpy188I	TCNGA	2 cut(s)	50, 187
Hpy188III	TCNNGA	3 cut(s)	154, 167, 266
Hpy99I	CGWCG	2 cut(s)	43, 119
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	45, 257, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	38
Kzo9I	GATC	4 cut(s)	21, 52, 72, 150
LpnPI	CCDG	7 cut(s)	89, 120, 120, 256, 279, 312, 400
Lsp1109I	GCAGC	2 cut(s)	241, 301
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	3 cut(s)	56, 179, 303
MaeII	ACGT	1 cut(s)	117
MalI	GATC	4 cut(s)	23, 54, 74, 152
MboI	GATC	4 cut(s)	21, 52, 72, 150
MboII	GAAGA	6 cut(s)	16, 158, 209, 338, 377, 386
MflI	RGATCY	3 cut(s)	21, 52, 72
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	3 cut(s)	14, 102, 141
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	3 cut(s)	48, 73, 351
MnlI	CCTC	8 cut(s)	181, 202, 205, 313, 316, 334, 340, 355
MseI	TTAA	1 cut(s)	101
MspI	CCGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	4 cut(s)	21, 52, 72, 150
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	256, 316
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	3 cut(s)	21, 52, 72
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	2 cut(s)	255, 315
Sau3AI	GATC	4 cut(s)	21, 52, 72, 150
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	8 cut(s)	120, 216, 228, 274, 301, 316, 340, 416
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	14, 102, 141
SspMI	CTAG	3 cut(s)	56, 179, 303
TaiI	ACGT	1 cut(s)	120
TasI	AATT	3 cut(s)	14, 102, 141
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TseI	GCWGC	2 cut(s)	254, 314
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	3 cut(s)	56, 179, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.