Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

24459423 .. 24463472

Gene Structure 4050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAAGGTGATGAACATCATCAAACCCAAACCAAACCCACAGCAGCAATTGCGAGATTGGCAGCGTAAGCTTCGTCAAGAGTGCCGAAACATCGAACGCCAAATTCGAGATATAGAGAGAGAAGAGAAAAGTGTGCAAAAAGCAATCAAAGATGCTGCCAAGAGAAATGACATGGGTTCTGCAAAGTCACTTGCTGTAGAAATTGTGAGATCTAGAAAGACAGTGAACCGTCTTCATGAAAATAAGGCGCAACTCAATTCAATATCAATGCACCTTGGCGAGAGCGTTGCTATTGCCCGTACTGTTGGCCATTTATCCAAGAGTGCTGAGGTCATGAAGCTTGTTAATAATCTGATGAAGGCTCCAGAAGTGGCTGTTACGATGCAAGAATTTAGCAAGGAGATGACTAAGGCAGGGGTAATTGAAGAGATGGTCAATGATAGTCTTGACACAACACTAGACTCGGAGGACATTGAAGACGAGATCGAGGAGGAAGTTGATAAGGTTTTGACCGCCATAGCGGGCGAGACTGCTGCACAACTTCCAGAAGCTGTGAGGAAGCAGAAGTTGAAGCAACCTGCTAGAGCCCAAGCTGCGCAGGAGGAAGAAGCAATAGCTGAGGGTGGTGATGATGAGGCAGAGTTGGAAGAAATACGAGCCAGACTTGCCAAAGTTAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

229

Amino Acids

25.68

Weight (kDa)

5.52

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	21 - 187	1.2e-32	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	589
AciI	CCGC	2 cut(s)	516, 524
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	105, 392
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	678
AgsI	TTSAA	4 cut(s)	264, 428, 479, 574
AluBI	AGCT	5 cut(s)	73, 343, 554, 596, 620
AluI	AGCT	5 cut(s)	73, 343, 554, 596, 620
Alw26I	GTCTC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	5 cut(s)	46, 64, 158, 536, 596
ApoI	RAATTY	2 cut(s)	105, 392
AspLEI	GCGC	2 cut(s)	253, 601
AsuHPI	GGTGA	2 cut(s)	22, 641
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	592
BbsI	GAAGAC	2 cut(s)	227, 486
BbvCI	CCTCAGC	2 cut(s)	330, 621
BbvI	GCAGC	5 cut(s)	58, 76, 145, 523, 583
BccI	CCATC	1 cut(s)	427
BcgI	CGANNNNNNTGC	4 cut(s)	272, 306, 518, 552
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	3 cut(s)	216, 461, 585
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	5 cut(s)	47, 65, 159, 537, 597
BlsI	GCNGC	5 cut(s)	48, 66, 160, 538, 598
BmiI	GGNNCC	1 cut(s)	366
BmsI	GCATC	2 cut(s)	145, 375
BpiI	GAAGAC	2 cut(s)	227, 486
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	2 cut(s)	330, 621
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	678
BseMII	CTCAG	2 cut(s)	321, 612
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	5 cut(s)	58, 76, 145, 523, 583
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	678
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	2 cut(s)	212, 486
BspACI	CCGC	2 cut(s)	516, 524
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	322, 613
BspHI	TCATGA	2 cut(s)	238, 336
BspLI	GGNNCC	1 cut(s)	366
BspMI	ACCTGC	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	212, 486
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	226, 233, 307
Bst6I	CTCTTC	2 cut(s)	120, 423
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	3 cut(s)	330, 411, 621
BstHHI	GCGC	2 cut(s)	253, 601
BstKTI	GATC	2 cut(s)	215, 489
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	2 cut(s)	212, 486
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 61, 70, 596, 668
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	58, 76, 145, 523, 583
BstV2I	GAAGAC	2 cut(s)	227, 486
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	2 cut(s)	238, 336
CfoI	GCGC	2 cut(s)	253, 601
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	3 cut(s)	175, 239, 337
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	3 cut(s)	330, 411, 621
DpnI	GATC	2 cut(s)	214, 488
DpnII	GATC	2 cut(s)	212, 486
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	120, 423
EarI	CTCTTC	2 cut(s)	120, 423
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	592
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	3 cut(s)	178, 242, 340
FaiI	YATR	6 cut(s)	116, 176, 240, 338, 521, 685
FatI	CATG	3 cut(s)	174, 238, 336
FauI	CCCGC	1 cut(s)	517
Fnu4HI	GCNGC	5 cut(s)	47, 65, 159, 537, 597
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	5 cut(s)	47, 65, 159, 537, 597
FspBI	CTAG	3 cut(s)	216, 461, 585
FspI	TGCGCA	1 cut(s)	600
GlaI	GCGC	2 cut(s)	252, 600
GluI	GCNGC	5 cut(s)	47, 65, 159, 537, 597
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	312
HhaI	GCGC	2 cut(s)	253, 601
Hin1II	CATG	3 cut(s)	178, 242, 340
Hin6I	GCGC	2 cut(s)	251, 599
HinP1I	GCGC	2 cut(s)	251, 599
HindIII	AAGCTT	2 cut(s)	71, 341
HinfI	GANTC	1 cut(s)	464
HphI	GGTGA	2 cut(s)	22, 641
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	357, 469
Hpy188III	TCNNGA	8 cut(s)	80, 110, 216, 239, 337, 368, 449, 548
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	3 cut(s)	226, 233, 307
HpyCH4V	TGCA	5 cut(s)	139, 185, 274, 388, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 61, 70, 596, 668
HpyF3I	CTNAG	3 cut(s)	330, 411, 621
Hsp92II	CATG	3 cut(s)	178, 242, 340
HspAI	GCGC	2 cut(s)	251, 599
Kzo9I	GATC	2 cut(s)	212, 486
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	6 cut(s)	381, 402, 561, 587, 594, 676
Lsp1109I	GCAGC	5 cut(s)	58, 76, 145, 523, 583
LweI	GCATC	2 cut(s)	145, 375
MaeI	CTAG	3 cut(s)	216, 461, 585
MaeIII	GTNAC	2 cut(s)	189, 379
MalI	GATC	2 cut(s)	214, 488
MboI	GATC	2 cut(s)	212, 486
MboII	GAAGA	6 cut(s)	137, 227, 440, 491, 620, 662
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	592
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	6 cut(s)	50, 105, 204, 259, 392, 423
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	8 cut(s)	325, 463, 484, 487, 552, 598, 616, 631
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	312
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	5 cut(s)	52, 61, 70, 596, 668
NdeII	GATC	2 cut(s)	212, 486
NlaIII	CATG	3 cut(s)	178, 242, 340
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	189
NsbI	TGCGCA	1 cut(s)	600
PagI	TCATGA	2 cut(s)	238, 336
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	48, 66, 160, 538, 598
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	5 cut(s)	47, 65, 159, 537, 597
Sau3AI	GATC	2 cut(s)	212, 486
SchI	GAGTC	1 cut(s)	458
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	2 cut(s)	145, 375
SfcI	CTRYAG	1 cut(s)	198
Sse9I	AATT	6 cut(s)	50, 105, 204, 259, 392, 423
SsiI	CCGC	2 cut(s)	516, 524
SspMI	CTAG	3 cut(s)	216, 461, 585
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	226, 233, 307
TaqI	TCGA	3 cut(s)	96, 109, 489
TasI	AATT	6 cut(s)	50, 105, 204, 259, 392, 423
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	5 cut(s)	46, 64, 158, 536, 596
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	5 cut(s)	29, 227, 255, 353, 374
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	2 cut(s)	105, 392
XbaI	TCTAGA	1 cut(s)	215
XspI	CTAG	3 cut(s)	216, 461, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.