Rorug01G0298000

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003851
Physical Location & Seq
Forward (+)
41402043 .. 41403862
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0298000.1

Sequence Viewer

Length: 1416 bp
ATGGGAAAAGAGCTTCAAGTTGTGATGCTTCCATGGTCAGGCTTTGGCCATTTGATGCCCTTCTTTCAACTCTCCATAGCCTTGGCCAAAGCCAAAGTTCATGTCTCCTACATATCCACCCCAAGAAATATTCAAAGGCTCCCCAAAATCTCACCTGATTTACAACCTTTCATACACTTGGTCCCCATTCCATTTCCTCGTTTGGATCCTGACTTCTTGCCGGAAGGAGCTGAGGCCGGTATCGAGGTGCCCTCCGAAAAATCTGAAAACTTACACATCGCATATGATCTTCTTCAAACTCCCATCAAGCATTTCATTGCAGATCAGATGCCAGATTGGATAATTGCCGATTTTGCTGCCCATTGGGCGGTTGAAATTGCCAAAGAGTATGGTATTCTACTTGCCTACTTCATAATTTCCAGTGCTGCAGCCAGTGTTTTTTTTGGCCCACCTGAATATCTCACTGGTGCAAACAGAAACTATGCTCTCCCATCACCACAAAGCTTGACATCTCCACGAGAATGGATCACTTTTCCTTCTTTGGTGGCATTCAAGGAGCATGAAGCCACTAATGTCCTTCAATGGGCTTTCGCAGCAAATAGTATAGGGATAAGTTTTACGTCAAGGATTGCCAAGATCATATCAACAAGTCAAGTTTTGGCGATTCGTACTTGCAATGAGATTGAAGGAGACTACTTGGAAGTGTACAAGAAAATTACTGGAAAGCCAGTGATTCCCACTGGTGTGCTCCCTCCGGATCAACCTGGGAAAAGGGAAAAAGGGGAAATAAACTCCGATGGGGCTATGTTTGATTGGCTTGATAAGCAAAAACCCAGGTCAATTGTGTTTGTGGGGTTTGGGAGTGAGTGTAAGCTGAGCAAAGAACAAGTTCATGAGATAGCTCATGGGCTGGAGCTATCAGAATTGCCATTTATTTGGGGACTCAGAAAACCCATTTCAGCTAACACTGATGAAGTAGATGATTTTCTGCCTTCAGGTTTTGTTGACAGATCATCAGAGAAAGGGCTTGTTTGCTTTGGATGGGTGCCCCAAATGGAAATTTTGGGGCACCCATCAATTGGGGGCTCTTTGTTTCACTCTGGATGGGGTTCTGTGATTGAGACTCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATGTATGGTCAGCCTTTGGAAGCAAGGCTTTTGGTAGAGAAGGGTCTGGCTGTCGAGGTGAAGCGCAACGAAGATGGGTCGCTTAGTAGAGATGAAATAGCAAAAGCACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACTTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCATAAGCTGCACCAAGACCACTACATCGGTGCATTTGTTGATTATCTTAAAAATAATGTTGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

471

Amino Acids

52.32

Weight (kDa)

5.68

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 278 - 428 2.7e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 247, 1045, 1068
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 1 cut(s) 368
AclWI GGATC 4 cut(s) 200, 213, 533, 765
AcoI YGGCCR 2 cut(s) 46, 84
AcsI RAATTY 1 cut(s) 1059
AcuI CTGAAG 1 cut(s) 978
AfaI GTAC 2 cut(s) 670, 707
AfiI CCNNNNNNNGG 4 cut(s) 38, 367, 583, 1079
AgsI TTSAA 8 cut(s) 17, 68, 134, 296, 374, 553, 581, 686
AjnI CCWGG 2 cut(s) 763, 833
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 9 cut(s) 13, 230, 504, 874, 902, 916, 962, 1328, 1354
AluI AGCT 9 cut(s) 13, 230, 504, 874, 902, 916, 962, 1328, 1354
Alw21I GWGCWC 2 cut(s) 750, 1305
Alw26I GTCTC 3 cut(s) 109, 684, 1115
AlwI GGATC 4 cut(s) 200, 213, 533, 765
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 4 cut(s) 46, 84, 234, 445
ApeKI GCWGC 7 cut(s) 356, 425, 428, 593, 1328, 1331, 1354
ApoI RAATTY 1 cut(s) 1059
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
Asp700I GAANNNNTTC 1 cut(s) 888
AspLEI GCGC 1 cut(s) 1227
AspS9I GGNCC 2 cut(s) 181, 446
AsuHPI GGTGA 3 cut(s) 144, 486, 1231
AsuNHI GCTAGC 1 cut(s) 1276
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 3 cut(s) 252, 1050, 1071
BalI TGGCCA 2 cut(s) 48, 86
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 3 cut(s) 247, 1045, 1068
BanII GRGCYC 1 cut(s) 1088
BauI CACGAG 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 750, 1305
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 7 cut(s) 343, 412, 440, 605, 1315, 1318, 1341
BccI CCATC 7 cut(s) 311, 499, 791, 1035, 1081, 1098, 1229
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BciT130I CCWGG 2 cut(s) 765, 835
BcoDI GTCTC 3 cut(s) 109, 684, 1115
BfaI CTAG 1 cut(s) 1277
BfmI CTRYAG 2 cut(s) 426, 1332
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 7 cut(s) 357, 426, 429, 594, 1329, 1332, 1355
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 7 cut(s) 358, 427, 430, 595, 1330, 1333, 1356
Bme1390I CCNGG 2 cut(s) 765, 835
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 2 cut(s) 181, 446
BmiI GGNNCC 6 cut(s) 140, 183, 207, 249, 1047, 1070
BmrFI CCNGG 2 cut(s) 765, 835
BmsI GCATC 3 cut(s) 15, 45, 318
BmtI GCTAGC 1 cut(s) 1280
BplI GAGNNNNNCTC 2 cut(s) 236, 268
BpmI CTGGAG 1 cut(s) 932
Bpu10I CCTNAGC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 875
BpuEI CTTGAG 1 cut(s) 1327
BsaJI CCNNGG 4 cut(s) 32, 81, 764, 833
BsaWI WCCGGW 1 cut(s) 754
BsaXI ACNNNNNCTCC 2 cut(s) 853, 883
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 367, 583, 1079
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 6 cut(s) 420, 432, 469, 724, 728, 745
Bse3DI GCAATG 5 cut(s) 315, 682, 1138, 1287, 1321
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 2 cut(s) 765, 835
BseDI CCNNGG 4 cut(s) 32, 81, 764, 833
BseGI GGATG 2 cut(s) 1046, 1109
BseLI CCNNNNNNNGG 4 cut(s) 38, 367, 583, 1079
BseMI GCAATG 5 cut(s) 315, 682, 1138, 1287, 1321
BseMII CTCAG 4 cut(s) 222, 866, 958, 1262
BseNI ACTGG 6 cut(s) 420, 432, 469, 724, 728, 745
BseSI GKGCMC 3 cut(s) 252, 1050, 1071
BseXI GCAGC 7 cut(s) 343, 412, 440, 605, 1315, 1318, 1341
BsgI GTGCAG 1 cut(s) 1340
BshFI GGCC 4 cut(s) 48, 86, 236, 447
BshNI GGYRCC 3 cut(s) 247, 1045, 1068
BsiHKAI GWGCWC 2 cut(s) 750, 1305
BsiSI CCGG 3 cut(s) 221, 237, 755
BslFI GGGAC 2 cut(s) 167, 954
BslI CCNNNNNNNGG 4 cut(s) 38, 367, 583, 1079
BsmAI GTCTC 3 cut(s) 109, 684, 1115
BsmFI GGGAC 2 cut(s) 167, 954
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 4 cut(s) 48, 86, 236, 447
Bsp1286I GDGCHC 6 cut(s) 252, 750, 1050, 1071, 1088, 1305
Bsp13I TCCGGA 1 cut(s) 754
Bsp1407I TGTACA 1 cut(s) 705
Bsp143I GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 1 cut(s) 368
BspANI GGCC 4 cut(s) 48, 86, 236, 447
BspCNI CTCAG 4 cut(s) 223, 867, 957, 1263
BspEI TCCGGA 1 cut(s) 754
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 6 cut(s) 140, 183, 207, 249, 1047, 1070
BspMAI CTGCAG 2 cut(s) 430, 1336
BspOI GCTAGC 1 cut(s) 1280
BspPI GGATC 4 cut(s) 200, 213, 533, 765
BspT107I GGYRCC 3 cut(s) 247, 1045, 1068
BsrDI GCAATG 5 cut(s) 315, 682, 1138, 1287, 1321
BsrFI RCCGGY 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 705
BsrI ACTGG 6 cut(s) 420, 432, 469, 724, 728, 745
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 4 cut(s) 32, 81, 764, 833
BssMI GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 32, 81
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 765, 835
Bst6I CTCTTC 1 cut(s) 1284
BstAUI TGTACA 1 cut(s) 705
BstC8I GCNNGC 1 cut(s) 1278
BstDEI CTNAG 5 cut(s) 231, 875, 944, 1244, 1271
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 1046, 1109
BstHHI GCGC 1 cut(s) 1227
BstKTI GATC 8 cut(s) 208, 289, 325, 528, 639, 760, 1013, 1348
BstMAI GTCTC 3 cut(s) 109, 684, 1115
BstMBI GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
BstMWI GCNNNNNNNGC 6 cut(s) 353, 365, 593, 823, 1135, 1325
BstNI CCWGG 2 cut(s) 765, 835
BstSCI CCNGG 2 cut(s) 763, 833
BstSFI CTRYAG 2 cut(s) 426, 1332
BstSLI GKGCMC 3 cut(s) 252, 1050, 1071
BstV1I GCAGC 7 cut(s) 343, 412, 440, 605, 1315, 1318, 1341
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 3 cut(s) 82, 522, 936
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 4 cut(s) 48, 86, 236, 447
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 1046, 1109
BtsIMutI CAGTG 7 cut(s) 427, 439, 462, 735, 738, 966, 1268
Cac8I GCNNGC 1 cut(s) 1278
CciI TCATGA 1 cut(s) 892
CfoI GCGC 1 cut(s) 1227
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 181, 446
Csp6I GTAC 2 cut(s) 669, 706
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 6 cut(s) 33, 101, 560, 893, 905, 1162
CviQI GTAC 2 cut(s) 669, 706
DdeI CTNAG 5 cut(s) 231, 875, 944, 1244, 1271
DpnI GATC 8 cut(s) 207, 288, 324, 527, 638, 759, 1012, 1347
DpnII GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
EaeI YGGCCR 2 cut(s) 46, 84
Eam1104I CTCTTC 1 cut(s) 1284
EarI CTCTTC 1 cut(s) 1284
Eco130I CCWWGG 2 cut(s) 32, 81
Eco24I GRGCYC 1 cut(s) 1088
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 978
EcoRII CCWGG 2 cut(s) 763, 833
EcoT14I CCWWGG 2 cut(s) 32, 81
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 2 cut(s) 32, 81
FaeI CATG 6 cut(s) 36, 104, 563, 896, 908, 1165
FalI AAGNNNNNCTT 2 cut(s) 1173, 1205
FaqI GGGAC 2 cut(s) 167, 954
FatI CATG 6 cut(s) 32, 100, 559, 892, 904, 1161
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 7 cut(s) 357, 426, 429, 594, 1329, 1332, 1355
FokI GGATG 2 cut(s) 1053, 1116
FriOI GRGCYC 1 cut(s) 1088
Fsp4HI GCNGC 7 cut(s) 357, 426, 429, 594, 1329, 1332, 1355
FspBI CTAG 1 cut(s) 1277
GlaI GCGC 1 cut(s) 1226
GluI GCNGC 7 cut(s) 357, 426, 429, 594, 1329, 1332, 1355
GsuI CTGGAG 1 cut(s) 932
HaeIII GGCC 4 cut(s) 48, 86, 236, 447
HapII CCGG 3 cut(s) 221, 237, 755
HhaI GCGC 1 cut(s) 1227
Hin1II CATG 6 cut(s) 36, 104, 563, 896, 908, 1165
Hin6I GCGC 1 cut(s) 1225
HinP1I GCGC 1 cut(s) 1225
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 4 cut(s) 664, 733, 942, 1123
HpaII CCGG 3 cut(s) 221, 237, 755
HphI GGTGA 3 cut(s) 144, 486, 1231
Hpy166II GTNNAC 2 cut(s) 706, 1006
Hpy188I TCNGA 7 cut(s) 256, 265, 327, 796, 922, 947, 1018
Hpy188III TCNNGA 4 cut(s) 209, 755, 893, 1101
Hpy8I GTNNAC 2 cut(s) 706, 1006
HpyAV CCTTC 9 cut(s) 70, 218, 546, 587, 680, 1002, 1168, 1195, 1289
HpyCH4IV ACGT 1 cut(s) 620
HpyCH4V TGCA 9 cut(s) 320, 428, 470, 675, 1129, 1334, 1357, 1379, 1409
HpyF10VI GCNNNNNNNGC 6 cut(s) 353, 365, 593, 823, 1135, 1325
HpyF3I CTNAG 5 cut(s) 231, 875, 944, 1244, 1271
HpySE526I ACGT 1 cut(s) 620
Hsp92II CATG 6 cut(s) 36, 104, 563, 896, 908, 1165
HspAI GCGC 1 cut(s) 1225
Kpn2I TCCGGA 1 cut(s) 754
Kzo9I GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
LmnI GCTCC 5 cut(s) 144, 227, 556, 753, 913
Lsp1109I GCAGC 7 cut(s) 343, 412, 440, 605, 1315, 1318, 1341
LweI GCATC 3 cut(s) 15, 45, 318
MaeI CTAG 1 cut(s) 1277
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 1 cut(s) 1152
MalI GATC 8 cut(s) 207, 288, 324, 527, 638, 759, 1012, 1347
MboI GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
MboII GAAGA 4 cut(s) 281, 284, 1244, 1301
MfeI CAATTG 2 cut(s) 840, 1077
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 6 cut(s) 252, 750, 1050, 1071, 1088, 1305
MlsI TGGCCA 2 cut(s) 48, 86
MluNI TGGCCA 2 cut(s) 48, 86
MlyI GAGTC 2 cut(s) 936, 1117
MnlI CCTC 9 cut(s) 207, 226, 238, 262, 762, 1210, 1266, 1285, 1314
Mox20I TGGCCA 2 cut(s) 48, 86
MroI TCCGGA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 888
MscI TGGCCA 2 cut(s) 48, 86
MseI TTAA 2 cut(s) 1395, 1414
MslI CAYNNNNRTG 2 cut(s) 520, 743
Msp20I TGGCCA 2 cut(s) 48, 86
MspI CCGG 3 cut(s) 221, 237, 755
MspR9I CCNGG 2 cut(s) 765, 835
MunI CAATTG 2 cut(s) 840, 1077
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 2 cut(s) 765, 835
MwoI GCNNNNNNNGC 6 cut(s) 353, 365, 593, 823, 1135, 1325
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 283
NdeII GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
NheI GCTAGC 1 cut(s) 1276
NlaIII CATG 6 cut(s) 36, 104, 563, 896, 908, 1165
NlaIV GGNNCC 6 cut(s) 140, 183, 207, 249, 1047, 1070
OliI CACNNNNGTG 1 cut(s) 743
PagI TCATGA 1 cut(s) 892
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 2 cut(s) 664, 733
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 7 cut(s) 358, 427, 430, 595, 1330, 1333, 1356
PleI GAGTC 2 cut(s) 936, 1117
PpsI GAGTC 2 cut(s) 936, 1117
Psp6I CCWGG 2 cut(s) 763, 833
PspGI CCWGG 2 cut(s) 763, 833
PspN4I GGNNCC 6 cut(s) 140, 183, 207, 249, 1047, 1070
PspPI GGNCC 2 cut(s) 181, 446
PstI CTGCAG 2 cut(s) 430, 1336
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 2 cut(s) 670, 707
RsaNI GTAC 2 cut(s) 669, 706
RseI CAYNNNNRTG 2 cut(s) 520, 743
SaqAI TTAA 2 cut(s) 1395, 1414
SatI GCNGC 7 cut(s) 357, 426, 429, 594, 1329, 1332, 1355
Sau3AI GATC 8 cut(s) 205, 286, 322, 525, 636, 757, 1010, 1345
Sau96I GGNCC 2 cut(s) 181, 446
SchI GAGTC 2 cut(s) 936, 1117
ScrFI CCNGG 2 cut(s) 765, 835
SduI GDGCHC 6 cut(s) 252, 750, 1050, 1071, 1088, 1305
SfaNI GCATC 3 cut(s) 15, 45, 318
SfcI CTRYAG 2 cut(s) 426, 1332
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 520, 743
SmlI CTYRAG 1 cut(s) 1306
SmoI CTYRAG 1 cut(s) 1306
SsiI CCGC 1 cut(s) 368
SspI AATATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 1277
StyD4I CCNGG 2 cut(s) 763, 833
StyI CCWWGG 2 cut(s) 32, 81
TaiI ACGT 1 cut(s) 623
TaqI TCGA 2 cut(s) 243, 1215
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 2 cut(s) 664, 733
Tru1I TTAA 2 cut(s) 1395, 1414
Tru9I TTAA 2 cut(s) 1395, 1414
TscAI CASTG 7 cut(s) 427, 439, 469, 735, 745, 973, 1275
TseI GCWGC 7 cut(s) 356, 425, 428, 593, 1328, 1331, 1354
TspDTI ATGAA 9 cut(s) 89, 160, 304, 400, 576, 881, 987, 1150, 1269
TspRI CASTG 7 cut(s) 427, 439, 469, 735, 745, 973, 1275
Van91I CCANNNNNTGG 1 cut(s) 1079
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 1059
XmnI GAANNNNTTC 1 cut(s) 888
XspI CTAG 1 cut(s) 1277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.