Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Reverse (-)

28561193 .. 28565034

Gene Structure 3842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGAAGGTGATGAATATCATCAAGCCAAAACCAAACCCACAGCAGCAATTGCGAGATTGGCAGCGTAAACTTCGCCAAGAGTGCCGCAACATCGAACGCCAAATTCGAGATATACAAAGAGAAGAGAAAAGTGTGCAAAAAGCAATTAAAGATGCTGCCAAGAGAAATGACATGGGTTCTGCAAAGTCACTTGCTGTAGAAATTGTGAGATCTAGAAAGACAGTGAACCGTCTTCATGAAAACAAGGCACAACTCAATTCAATATCAATGCACCTCGGGGAGAGTGTTGAGATCGTGAATGATAGTCTTGACACGGCACTAGACTCGGAGGACATTGAAGACGAGATAGAGGAGGAAGTTGATAAGGTTTTGACTGCTATAGCCGGTGAGACTGCTGCACAACTTCCAGAAGCTGTCAGGAAGGAGAAGTTGAAGCAACCTGCTAGTGCCCAAGCTGCACAGGAGGAAGAAGCAATAGCTGAGGGTGCCGATGATGAGGAAGAGTTGGAAGAAATACGAGCCAGACTTGCCAAAGTAAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

182

Amino Acids

20.66

Weight (kDa)

5.08

Isoelectric Point (pI)

68.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	21 - 93	7.3e-09	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	488
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgsI	TTSAA	3 cut(s)	264, 341, 436
AluBI	AGCT	3 cut(s)	416, 458, 482
AluI	AGCT	3 cut(s)	416, 458, 482
Alw26I	GTCTC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	278
ApeKI	GCWGC	5 cut(s)	46, 64, 158, 398, 458
ApoI	RAATTY	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	22, 401
AvaI	CYCGRG	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	488
BbsI	GAAGAC	2 cut(s)	227, 348
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	5 cut(s)	58, 76, 145, 385, 445
BceAI	ACGGC	1 cut(s)	333
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	3 cut(s)	216, 323, 447
BfmI	CTRYAG	2 cut(s)	198, 381
BfuAI	ACCTGC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	6 cut(s)	47, 65, 88, 159, 399, 459
BlsI	GCNGC	6 cut(s)	48, 66, 89, 160, 400, 460
BmeT110I	CYCGRG	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	490
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	2 cut(s)	227, 348
Bpu10I	CCTNAGC	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse118I	RCCGGY	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	5 cut(s)	58, 76, 145, 385, 445
BsgI	GTGCAG	2 cut(s)	384, 444
BshNI	GGYRCC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	2 cut(s)	212, 294
BspACI	CCGC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	451
BspT107I	GGYRCC	1 cut(s)	488
BsrFI	RCCGGY	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	212, 294
Bst4CI	ACNGT	2 cut(s)	226, 233
Bst6I	CTCTTC	2 cut(s)	120, 498
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	483
BstKTI	GATC	2 cut(s)	215, 297
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	212, 294
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 458, 488, 530
BstSFI	CTRYAG	2 cut(s)	198, 381
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	5 cut(s)	58, 76, 145, 385, 445
BstV2I	GAAGAC	2 cut(s)	227, 348
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	386
CviAII	CATG	2 cut(s)	175, 239
CviJI	RGCY	6 cut(s)	28, 386, 416, 458, 482, 524
CviKI_1	RGCY	6 cut(s)	28, 386, 416, 458, 482, 524
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	2 cut(s)	214, 296
DpnII	GATC	2 cut(s)	212, 294
Eam1104I	CTCTTC	2 cut(s)	120, 498
EarI	CTCTTC	2 cut(s)	120, 498
Eco88I	CYCGRG	1 cut(s)	278
FaeI	CATG	2 cut(s)	178, 242
FaiI	YATR	5 cut(s)	116, 176, 240, 383, 547
FatI	CATG	2 cut(s)	174, 238
Fnu4HI	GCNGC	6 cut(s)	47, 65, 88, 159, 399, 459
Fsp4HI	GCNGC	6 cut(s)	47, 65, 88, 159, 399, 459
FspBI	CTAG	3 cut(s)	216, 323, 447
GluI	GCNGC	6 cut(s)	47, 65, 88, 159, 399, 459
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	2 cut(s)	178, 242
HinfI	GANTC	1 cut(s)	326
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	2 cut(s)	22, 401
Hpy166II	GTNNAC	2 cut(s)	71, 229
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	7 cut(s)	110, 216, 239, 298, 311, 410, 421
Hpy8I	GTNNAC	2 cut(s)	71, 229
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	226, 233
HpyCH4V	TGCA	5 cut(s)	139, 185, 274, 401, 461
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 458, 488, 530
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	178, 242
Kzo9I	GATC	2 cut(s)	212, 294
LpnPI	CCDG	6 cut(s)	400, 406, 423, 449, 456, 538
Lsp1109I	GCAGC	5 cut(s)	58, 76, 145, 385, 445
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	3 cut(s)	216, 323, 447
MaeIII	GTNAC	1 cut(s)	189
MalI	GATC	2 cut(s)	214, 296
MboI	GATC	2 cut(s)	212, 294
MboII	GAAGA	6 cut(s)	137, 227, 353, 482, 515, 524
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	5 cut(s)	50, 105, 147, 204, 259
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	7 cut(s)	287, 325, 346, 349, 460, 478, 493
MseI	TTAA	1 cut(s)	150
MspI	CCGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 458, 488, 530
NdeII	GATC	2 cut(s)	212, 294
NlaIII	CATG	2 cut(s)	178, 242
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	189
PagI	TCATGA	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PkrI	GCNGC	6 cut(s)	48, 66, 89, 160, 400, 460
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	6 cut(s)	47, 65, 88, 159, 399, 459
Sau3AI	GATC	2 cut(s)	212, 294
SchI	GAGTC	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	8 cut(s)	12, 279, 372, 418, 445, 460, 484, 545
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	2 cut(s)	198, 381
Sse9I	AATT	5 cut(s)	50, 105, 147, 204, 259
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	3 cut(s)	216, 323, 447
TaaI	ACNGT	2 cut(s)	226, 233
TaqI	TCGA	2 cut(s)	96, 109
TasI	AATT	5 cut(s)	50, 105, 147, 204, 259
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	5 cut(s)	46, 64, 158, 398, 458
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	3 cut(s)	29, 227, 255
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	215
XspI	CTAG	3 cut(s)	216, 323, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.