Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

61005019 .. 61009251

Gene Structure 4233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAAGGTGATGAATATCATCAAGCCAAAACCAAACCCACAGCAGCAATTGCGAGATTGGCAGCGTAAACTTCGCCAAGAGTGCCGCAACATCGAACGCCAAATTCGAGATATACAAAGAGAGGAGAAAAGTGTGCAAAAAGCAATTAAAGATGCTGCCAAGAGAAATGACATGGGTTCTGCAAAGTCACTTGCTGTAGAAATTGTGAGATCTAGAAAGACCGTGAACCGTCTTCATGAAAACAAGGCGCAACTCAATTCAATATCAATGCACCTCGGGGAGAGCGTTGCTATTGCCCGTACTGTTGGCCATTTATCCAAGAGTGCTGAGGTCATGAAGCTTGTTAATAACCTGATGAAGGCTCCAGAAGTGGCTGTTACAATGCAAGAATTTAGCAAGGAGATGACTAAGGCTGGGGTAATTGAAGAGATCGTGAATGATAGTCTTGACACGGCACTAGACTCGGAGGACATTGAAGACGAGATAGAGGAGGAAGTTGATAAGGTTTTGACTGCTATAGCCGGTGAGACTGCTGCACAACTTCCAGAAGCTGTCAGGAAGGAGAAGTTGAAGCAACCTGCTAGTGCCCAAGCTGCACAGGAGGAAGAAGCAATAGCTGAGGGTGCCGATGATGAGGAAGAGTTGGAAGAAATACGAGCCAGACTTGCCAAAGTAAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

228

Amino Acids

25.63

Weight (kDa)

5.31

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	21 - 188	1.9e-32	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	626
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	105, 392
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	361, 678
AgsI	TTSAA	4 cut(s)	264, 428, 479, 574
AluBI	AGCT	4 cut(s)	343, 554, 596, 620
AluI	AGCT	4 cut(s)	343, 554, 596, 620
Alw26I	GTCTC	1 cut(s)	524
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	5 cut(s)	46, 64, 158, 536, 596
ApoI	RAATTY	2 cut(s)	105, 392
AspLEI	GCGC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	22, 539
AvaI	CYCGRG	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	592
BalI	TGGCCA	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	626
BbsI	GAAGAC	2 cut(s)	227, 486
BbvCI	CCTCAGC	2 cut(s)	330, 621
BbvI	GCAGC	5 cut(s)	58, 76, 145, 523, 583
BceAI	ACGGC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	447, 481
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	3 cut(s)	216, 461, 585
BfmI	CTRYAG	2 cut(s)	198, 519
BfuAI	ACCTGC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	6 cut(s)	47, 65, 88, 159, 537, 597
BlsI	GCNGC	6 cut(s)	48, 66, 89, 160, 538, 598
BmeT110I	CYCGRG	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	366, 628
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	2 cut(s)	227, 486
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	2 cut(s)	330, 621
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	361, 678
Bse118I	RCCGGY	1 cut(s)	524
Bse8I	GATNNNNATC	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	361, 678
BseMII	CTCAG	2 cut(s)	321, 612
BseRI	GAGGAG	2 cut(s)	140, 506
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	5 cut(s)	58, 76, 145, 523, 583
BseYI	CCCAGC	1 cut(s)	416
BsgI	GTGCAG	2 cut(s)	522, 582
BshFI	GGCC	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	626
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	361, 678
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	592
Bsp143I	GATC	2 cut(s)	212, 432
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	322, 613
BspHI	TCATGA	2 cut(s)	238, 336
BspLI	GGNNCC	2 cut(s)	366, 628
BspMI	ACCTGC	1 cut(s)	589
BspT107I	GGYRCC	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	212, 432
Bst4CI	ACNGT	3 cut(s)	226, 233, 307
Bst6I	CTCTTC	2 cut(s)	423, 636
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	330, 411, 621
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	215, 435
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	2 cut(s)	212, 432
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 596, 626, 668
BstSFI	CTRYAG	2 cut(s)	198, 519
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	5 cut(s)	58, 76, 145, 523, 583
BstV2I	GAAGAC	2 cut(s)	227, 486
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	589
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	2 cut(s)	238, 336
CfoI	GCGC	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	3 cut(s)	175, 239, 337
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	3 cut(s)	330, 411, 621
DpnI	GATC	2 cut(s)	214, 434
DpnII	GATC	2 cut(s)	212, 432
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	423, 636
EarI	CTCTTC	2 cut(s)	423, 636
Eco88I	CYCGRG	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	359
FaeI	CATG	3 cut(s)	178, 242, 340
FaiI	YATR	6 cut(s)	116, 176, 240, 338, 521, 685
FatI	CATG	3 cut(s)	174, 238, 336
Fnu4HI	GCNGC	6 cut(s)	47, 65, 88, 159, 537, 597
Fsp4HI	GCNGC	6 cut(s)	47, 65, 88, 159, 537, 597
FspBI	CTAG	3 cut(s)	216, 461, 585
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	6 cut(s)	47, 65, 88, 159, 537, 597
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	3 cut(s)	178, 242, 340
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	22, 539
Hpy166II	GTNNAC	2 cut(s)	71, 229
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	9 cut(s)	110, 216, 239, 337, 368, 436, 449, 548, 559
Hpy8I	GTNNAC	2 cut(s)	71, 229
HpyAV	CCTTC	2 cut(s)	355, 556
HpyCH4III	ACNGT	3 cut(s)	226, 233, 307
HpyCH4V	TGCA	6 cut(s)	139, 185, 274, 388, 539, 599
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 596, 626, 668
HpyF3I	CTNAG	3 cut(s)	330, 411, 621
Hsp92II	CATG	3 cut(s)	178, 242, 340
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	212, 432
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	368, 381, 402, 538, 544, 561, 587, 594, 676
Lsp1109I	GCAGC	5 cut(s)	58, 76, 145, 523, 583
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	3 cut(s)	216, 461, 585
MaeIII	GTNAC	2 cut(s)	189, 379
MalI	GATC	2 cut(s)	214, 434
MboI	GATC	2 cut(s)	212, 432
MboII	GAAGA	6 cut(s)	227, 440, 491, 620, 653, 662
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	592
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	7 cut(s)	50, 105, 147, 204, 259, 392, 423
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	9 cut(s)	118, 287, 325, 463, 484, 487, 598, 616, 631
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	2 cut(s)	150, 348
Msp20I	TGGCCA	1 cut(s)	312
MspI	CCGG	1 cut(s)	525
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	6 cut(s)	52, 61, 84, 596, 626, 668
NdeII	GATC	2 cut(s)	212, 432
NlaIII	CATG	3 cut(s)	178, 242, 340
NlaIV	GGNNCC	2 cut(s)	366, 628
NmuCI	GTSAC	1 cut(s)	189
PagI	TCATGA	2 cut(s)	238, 336
PcsI	WCGNNNNNNNCGW	2 cut(s)	106, 285
PkrI	GCNGC	6 cut(s)	48, 66, 89, 160, 538, 598
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	366, 628
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	150, 348
SatI	GCNGC	6 cut(s)	47, 65, 88, 159, 537, 597
Sau3AI	GATC	2 cut(s)	212, 432
SchI	GAGTC	1 cut(s)	458
SduI	GDGCHC	1 cut(s)	592
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	2 cut(s)	198, 519
Sse9I	AATT	7 cut(s)	50, 105, 147, 204, 259, 392, 423
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	3 cut(s)	216, 461, 585
TaaI	ACNGT	3 cut(s)	226, 233, 307
TaqI	TCGA	2 cut(s)	96, 109
TasI	AATT	7 cut(s)	50, 105, 147, 204, 259, 392, 423
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	150, 348
Tru9I	TTAA	2 cut(s)	150, 348
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	5 cut(s)	46, 64, 158, 536, 596
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	5 cut(s)	29, 227, 255, 353, 374
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	105, 392
XbaI	TCTAGA	1 cut(s)	215
XspI	CTAG	3 cut(s)	216, 461, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.