Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Forward (+)

63772417 .. 63787992

Gene Structure 15576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG375100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTTTGGGTTCATGGATCATGGGATTTGGGTTATTGGGTGTGGTTAATTTTGGTCGGTTTGTATTGGGTTTTTGCTTCAGATATACAAAGAGAGGAGAAAAGTGTGCAAAAAGCAATTAAAGATGCTGCCAAGAGAAATGACATGGGTTCTGCAAAGTCACTTGCTGTAGAAATTGTGAGATCTAGAAAGACAGTGAACCGTCTTCATGAAAACAAGGCGCAACTCAATTCAATATCAATGCACCTCGGGGAGAGCGTTGCTATTGCCCGTACTGTTGGCCATTTATCCAAGAGTGCTGAGGTCATGAAGCTTGTTAATAACCTGATGAAGGCTCCAGAAGTGGCTGTTACAATGCAAGAATTTAGCAAGGAGATGACTAAGGCTGGGGTAATTGAAGAGATCGTGAATGATAGTCTTGACACGGCACTAGACTCGGAGGACATTGAAGACGAGATAGAGGAGGAAGTTGATAAGGTTTTGACTGCTATAGCCGGTGAGACTGCTGCACAACTTCCAGAAGCTGTCAGGAAGGAGAAGTTGAAGCAACCTGCTAGTGCCCAAGCTGCACAGGAGGAAGAAGCAATAGCTGAGGGTGAGGGTGCTGATGATGAGGAAGAGTTGGAAGAAATACGAACCAGACTTGCCAAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

218

Amino Acids

24.14

Weight (kDa)

4.74

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	27 - 178	2.6e-27	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
AclWI	GGATC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	4 cut(s)	234, 398, 449, 544
AluBI	AGCT	4 cut(s)	313, 524, 566, 590
AluI	AGCT	4 cut(s)	313, 524, 566, 590
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	25
AlwNI	CAGNNNCTG	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	128, 506, 566
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	509, 608
AvaI	CYCGRG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	282
BbsI	GAAGAC	2 cut(s)	197, 456
BbvCI	CCTCAGC	2 cut(s)	300, 591
BbvI	GCAGC	3 cut(s)	115, 493, 553
BceAI	ACGGC	1 cut(s)	441
BcgI	CGANNNNNNTGC	2 cut(s)	417, 451
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	3 cut(s)	186, 431, 555
BfmI	CTRYAG	2 cut(s)	168, 489
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	3 cut(s)	129, 507, 567
BlsI	GCNGC	3 cut(s)	130, 508, 568
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	336
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	197, 456
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	2 cut(s)	300, 591
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	291, 582
BseRI	GAGGAG	2 cut(s)	110, 476
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	3 cut(s)	115, 493, 553
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	2 cut(s)	492, 552
BshFI	GGCC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	17, 182, 402
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	292, 583
BspHI	TCATGA	2 cut(s)	208, 306
BspLI	GGNNCC	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	17, 182, 402
Bst4CI	ACNGT	3 cut(s)	196, 203, 277
Bst6I	CTCTTC	2 cut(s)	393, 612
BstDEI	CTNAG	3 cut(s)	300, 381, 591
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	20, 185, 405
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	3 cut(s)	17, 182, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstSFI	CTRYAG	2 cut(s)	168, 489
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	115, 493, 553
BstV2I	GAAGAC	2 cut(s)	197, 456
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	524
CciI	TCATGA	2 cut(s)	208, 306
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	5 cut(s)	14, 21, 145, 209, 307
CviJI	RGCY	9 cut(s)	282, 313, 335, 347, 386, 494, 524, 566, 590
CviKI_1	RGCY	9 cut(s)	282, 313, 335, 347, 386, 494, 524, 566, 590
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	3 cut(s)	300, 381, 591
DpnI	GATC	3 cut(s)	19, 184, 404
DpnII	GATC	3 cut(s)	17, 182, 402
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	393, 612
EarI	CTCTTC	2 cut(s)	393, 612
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	329
FaeI	CATG	5 cut(s)	17, 24, 148, 212, 310
FaiI	YATR	7 cut(s)	15, 22, 86, 146, 210, 308, 491
FatI	CATG	5 cut(s)	13, 20, 144, 208, 306
Fnu4HI	GCNGC	3 cut(s)	129, 507, 567
Fsp4HI	GCNGC	3 cut(s)	129, 507, 567
FspBI	CTAG	3 cut(s)	186, 431, 555
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	3 cut(s)	129, 507, 567
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	495
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	5 cut(s)	17, 24, 148, 212, 310
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	509, 608
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	82, 439
Hpy188III	TCNNGA	8 cut(s)	186, 209, 307, 338, 406, 419, 518, 529
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	325, 526
HpyCH4III	ACNGT	3 cut(s)	196, 203, 277
HpyCH4V	TGCA	6 cut(s)	109, 155, 244, 358, 509, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	3 cut(s)	300, 381, 591
Hsp92II	CATG	5 cut(s)	17, 24, 148, 212, 310
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	17, 182, 402
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	9 cut(s)	338, 351, 372, 508, 514, 531, 557, 564, 652
Lsp1109I	GCAGC	3 cut(s)	115, 493, 553
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	3 cut(s)	186, 431, 555
MaeIII	GTNAC	2 cut(s)	159, 349
MalI	GATC	3 cut(s)	19, 184, 404
MboI	GATC	3 cut(s)	17, 182, 402
MboII	GAAGA	6 cut(s)	197, 410, 461, 590, 629, 638
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	562
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	6 cut(s)	48, 117, 174, 229, 362, 393
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	603
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	3 cut(s)	47, 120, 318
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	3 cut(s)	17, 182, 402
NlaIII	CATG	5 cut(s)	17, 24, 148, 212, 310
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	159
PagI	TCATGA	2 cut(s)	208, 306
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	130, 508, 568
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	47, 120, 318
SatI	GCNGC	3 cut(s)	129, 507, 567
Sau3AI	GATC	3 cut(s)	17, 182, 402
SchI	GAGTC	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	9 cut(s)	249, 306, 315, 327, 480, 526, 553, 568, 592
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	2 cut(s)	168, 489
Sse9I	AATT	6 cut(s)	48, 117, 174, 229, 362, 393
SspMI	CTAG	3 cut(s)	186, 431, 555
TaaI	ACNGT	3 cut(s)	196, 203, 277
TasI	AATT	6 cut(s)	48, 117, 174, 229, 362, 393
Tru1I	TTAA	3 cut(s)	47, 120, 318
Tru9I	TTAA	3 cut(s)	47, 120, 318
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	3 cut(s)	128, 506, 566
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	4 cut(s)	197, 225, 323, 344
TspRI	CASTG	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	185
XspI	CTAG	3 cut(s)	186, 431, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.