FvH4_7g18680

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003851
Physical Location & Seq
Forward (+)
15520553 .. 15523014
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18680.t1

Sequence Viewer

Length: 690 bp
ATGAAGAAGTTCAAGAGCATGTTGAAGCCGAAGCCAAACCCAACAGAGCAACTCAAAGATTGGCAGAGACGACTTCGCCAAGAGAGCCGCAACATTGAGCGCCAGATCAGAGATCTTGAGAGAGAAGAGAAGGTGGTACAGAAAGCTATTAGAGAAGCTGCAAAGAGAAATGACATGGGCTCAGCCAAGTCACTTGCAAGGGAGATTTTGGGGTCCAGGAAAGCTGTAAGTCGCCTTCAGGAGAATAAAGCCCAACTAAATTCTATATCTATGCACTTGGGAGAAAGTGTTGCACTTGCCCGTACTGTGGGACATCTATCGAAGAGTACAGAGGTCATGAAACTTGTCAATGACCTCACAAGAGCTCCAGAAATGGCTGTCACAATGCAACAATTTACTAAAGAAATCACCAAGGCTGGGCTAATTGAAGAATTTGTAAACGATGCTCTTGATACAACACTAGATTCGGAAGATATAGAAGAGGAAACTGAGGAAGAAGTTGAGAAAGTTCTGAGTGAAATAGCCGGTGAGACGGCTGCCCAGCTTCCGGAAGCTGTCAGGAAAGAGAGGACCAAGTTACCTGCCCATGTAGCTAGTGCATCACAAGAAGAACAAGCTATAGCAGAGGGTTCAGATGACGAAGAGGAATTGGAAGCATTGAGAGCACGGCTTGCTCAAGTCAGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

230

Amino Acids

25.84

Weight (kDa)

5.42

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 21 - 188 2.9e-30 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 589
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 1 cut(s) 88
AcsI RAATTY 2 cut(s) 259, 431
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 3 cut(s) 138, 304, 328
AfiI CCNNNNNNNGG 3 cut(s) 307, 417, 547
AgsI TTSAA 3 cut(s) 13, 25, 428
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 8 cut(s) 146, 158, 224, 365, 544, 554, 593, 617
AluI AGCT 8 cut(s) 146, 158, 224, 365, 544, 554, 593, 617
Alw21I GWGCWC 2 cut(s) 367, 667
Alw26I GTCTC 2 cut(s) 61, 524
Aor13HI TCCGGA 1 cut(s) 547
ApeKI GCWGC 2 cut(s) 158, 536
ApoI RAATTY 2 cut(s) 259, 431
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 213, 570
AsuHPI GGTGA 2 cut(s) 400, 539
AvaII GGWCC 2 cut(s) 213, 570
BanII GRGCYC 2 cut(s) 182, 367
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
Bbv12I GWGCWC 2 cut(s) 367, 667
BbvI GCAGC 2 cut(s) 145, 523
BceAI ACGGC 2 cut(s) 549, 683
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 61, 524
BfaI CTAG 2 cut(s) 461, 594
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 103
BfuAI ACCTGC 1 cut(s) 589
BglII AGATCT 1 cut(s) 112
BisI GCNGC 3 cut(s) 88, 159, 537
BlpI GCTNAGC 1 cut(s) 181
BlsI GCNGC 3 cut(s) 89, 160, 538
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 2 cut(s) 213, 570
BmgT120I GGNCC 2 cut(s) 213, 570
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 433, 608
BpmI CTGGAG 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 181
BpuEI CTTGAG 2 cut(s) 137, 660
BsaJI CCNNGG 1 cut(s) 411
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 349, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 417, 547
Bse118I RCCGGY 1 cut(s) 524
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 411
BseLI CCNNNNNNNGG 3 cut(s) 307, 417, 547
BseMII CTCAG 3 cut(s) 195, 480, 503
BseXI GCAGC 2 cut(s) 145, 523
BseYI CCCAGC 2 cut(s) 416, 540
BsiHKAI GWGCWC 2 cut(s) 367, 667
BsiSI CCGG 2 cut(s) 525, 548
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 307, 417, 547
BsmAI GTCTC 2 cut(s) 61, 524
BsmBI CGTCTC 2 cut(s) 61, 524
BsmFI GGGAC 1 cut(s) 324
Bsp1286I GDGCHC 3 cut(s) 182, 367, 667
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 3 cut(s) 105, 112, 683
Bsp1720I GCTNAGC 1 cut(s) 181
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 3 cut(s) 194, 481, 504
BspEI TCCGGA 1 cut(s) 547
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 214
BspMI ACCTGC 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 524
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 105, 112, 683
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 4 cut(s) 120, 317, 474, 636
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 3 cut(s) 181, 489, 512
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 3 cut(s) 108, 115, 686
BstMAI GTCTC 2 cut(s) 61, 524
BstMBI GATC 3 cut(s) 105, 112, 683
BstMWI GCNNNNNNNGC 4 cut(s) 84, 590, 662, 671
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 145, 523
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BveI ACCTGC 1 cut(s) 589
Cac8I GCNNGC 1 cut(s) 672
CciI TCATGA 1 cut(s) 336
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 2 cut(s) 213, 570
Csp6I GTAC 3 cut(s) 137, 303, 327
CviAII CATG 4 cut(s) 19, 175, 337, 587
CviQI GTAC 3 cut(s) 137, 303, 327
DdeI CTNAG 3 cut(s) 181, 489, 512
DpnI GATC 3 cut(s) 107, 114, 685
DpnII GATC 3 cut(s) 105, 112, 683
Eam1104I CTCTTC 4 cut(s) 120, 317, 474, 636
EarI CTCTTC 4 cut(s) 120, 317, 474, 636
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 2 cut(s) 182, 367
Eco47I GGWCC 2 cut(s) 213, 570
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 182, 367
ErhI CCWWGG 1 cut(s) 411
Esp3I CGTCTC 2 cut(s) 61, 524
FaeI CATG 4 cut(s) 22, 178, 340, 590
FaiI YATR 8 cut(s) 20, 176, 266, 272, 338, 476, 588, 620
FaqI GGGAC 1 cut(s) 324
FatI CATG 4 cut(s) 18, 174, 336, 586
Fnu4HI GCNGC 3 cut(s) 88, 159, 537
FriOI GRGCYC 2 cut(s) 182, 367
Fsp4HI GCNGC 3 cut(s) 88, 159, 537
FspBI CTAG 2 cut(s) 461, 594
GlaI GCGC 1 cut(s) 101
GluI GCNGC 3 cut(s) 88, 159, 537
GsaI CCCAGC 2 cut(s) 420, 544
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 103
HapII CCGG 2 cut(s) 525, 548
HhaI GCGC 1 cut(s) 102
Hin1II CATG 4 cut(s) 22, 178, 340, 590
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 1 cut(s) 464
HpaII CCGG 2 cut(s) 525, 548
HphI GGTGA 2 cut(s) 400, 539
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 5 cut(s) 110, 469, 513, 634, 683
Hpy188III TCNNGA 8 cut(s) 13, 116, 239, 337, 368, 449, 548, 559
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 124, 245
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 6 cut(s) 161, 197, 274, 293, 388, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 590, 662, 671
HpyF3I CTNAG 3 cut(s) 181, 489, 512
Hsp92II CATG 4 cut(s) 22, 178, 340, 590
HspAI GCGC 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 547
Kzo9I GATC 3 cut(s) 105, 112, 683
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 2 cut(s) 145, 523
LweI GCATC 2 cut(s) 433, 608
MaeI CTAG 2 cut(s) 461, 594
MaeIII GTNAC 3 cut(s) 189, 379, 576
MalI GATC 3 cut(s) 107, 114, 685
MboI GATC 3 cut(s) 105, 112, 683
MboII GAAGA 9 cut(s) 16, 137, 334, 440, 482, 491, 506, 620, 653
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 3 cut(s) 182, 367, 667
MluCI AATT 5 cut(s) 259, 392, 423, 431, 647
MnlI CCTC 7 cut(s) 325, 365, 475, 484, 561, 619, 637
MroI TCCGGA 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 2 cut(s) 525, 548
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 4 cut(s) 84, 590, 662, 671
NdeII GATC 3 cut(s) 105, 112, 683
NlaIII CATG 4 cut(s) 22, 178, 340, 590
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 189, 379
NspI RCATGY 1 cut(s) 22
PagI TCATGA 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 464
PfoI TCCNGGA 1 cut(s) 215
PkrI GCNGC 3 cut(s) 89, 160, 538
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 215
PspFI CCCAGC 2 cut(s) 416, 540
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 213, 570
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 3 cut(s) 138, 304, 328
RsaNI GTAC 3 cut(s) 137, 303, 327
SacI GAGCTC 1 cut(s) 367
SatI GCNGC 3 cut(s) 88, 159, 537
Sau3AI GATC 3 cut(s) 105, 112, 683
Sau96I GGNCC 2 cut(s) 213, 570
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 3 cut(s) 182, 367, 667
SfaNI GCATC 2 cut(s) 433, 608
SfcI CTRYAG 1 cut(s) 618
SinI GGWCC 2 cut(s) 213, 570
SmlI CTYRAG 2 cut(s) 116, 675
SmoI CTYRAG 2 cut(s) 116, 675
Sse9I AATT 5 cut(s) 259, 392, 423, 431, 647
SsiI CCGC 1 cut(s) 88
SspMI CTAG 2 cut(s) 461, 594
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 320
TasI AATT 5 cut(s) 259, 392, 423, 431, 647
TatI WGTACW 1 cut(s) 326
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 464
TseFI GTSAC 2 cut(s) 189, 379
TseI GCWGC 2 cut(s) 158, 536
Tsp45I GTSAC 2 cut(s) 189, 379
TspDTI ATGAA 2 cut(s) 17, 353
VpaK11BI GGWCC 2 cut(s) 213, 570
XapI RAATTY 2 cut(s) 259, 431
XceI RCATGY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 461, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.