Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Reverse (-)

10809139 .. 10810939

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCACCTTGGGGAGAGTGTTGCTATTGCCCGTACAGTGGGGCATTTATCCAAGAGTTCTGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAGTGGCTGTTACGATGCAAGAATTTAGCAAGGAGATGACCAAGGCAGGAGTAATTGAAGAGGTGGTGAATGATAGTCTTGACACAGCACTAGACTCCGAGGACATAGAAGAAGAAATAGAAGAAGAAGTCGACAAAGTTTTGACTTCTATAGCTGGTGAGACTGCTGCCCAGCTTCCAGAAGCGGTCAGGAAGGAGAGGTTGAAGCAACCTGCTACTGCACAAGCTAGACAGGAGGAAGAGGCAATAGCTGAGGGTGTCGATGATGAGGCAGAGTTGGAAGAAATAAGGGCCCGGCTTGCAAACGTTAGATCGATAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

141

Amino Acids

15.39

Weight (kDa)

4.48

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	284
AclI	AACGTT	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	37, 91
AgsI	TTSAA	2 cut(s)	158, 304
AluBI	AGCT	5 cut(s)	73, 254, 274, 326, 350
AluI	AGCT	5 cut(s)	73, 254, 274, 326, 350
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	390
ApaI	GGGCCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	390, 391
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	2 cut(s)	178, 269
BaeGI	GKGCMC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	394
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	191, 327
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	394
BmgT120I	GGNCC	2 cut(s)	390, 391
BmiI	GGNNCC	2 cut(s)	96, 392
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	394
Bsa29I	ATCGAT	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	7, 141, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 91
BseCI	ATCGAT	1 cut(s)	413
BseDI	CCNNGG	3 cut(s)	7, 141, 198
BseLI	CCNNNNNNNGG	2 cut(s)	37, 91
BseMII	CTCAG	2 cut(s)	51, 342
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	392
BshVI	ATCGAT	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	37, 91
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	392
Bsp120I	GGGCCC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	410
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	52, 343
BspDI	ATCGAT	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	96, 392
BspMI	ACCTGC	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	7, 141, 198
BssMI	GATC	1 cut(s)	410
BssT1I	CCWWGG	2 cut(s)	7, 141
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	153, 333
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	2 cut(s)	60, 351
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	413
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	392
BsuTUI	ATCGAT	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	42
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	399
CciI	TCATGA	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	390, 391
ClaI	ATCGAT	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	9 cut(s)	73, 95, 107, 254, 274, 326, 350, 392, 397
CviKI_1	RGCY	9 cut(s)	73, 95, 107, 254, 274, 326, 350, 392, 397
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	60, 351
DpnI	GATC	1 cut(s)	412
DpnII	GATC	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	153, 333
EarI	CTCTTC	2 cut(s)	153, 333
Eco130I	CCWWGG	2 cut(s)	7, 141
Eco24I	GRGCYC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	390
EcoT14I	CCWWGG	2 cut(s)	7, 141
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	7, 141
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	68, 89, 206, 251
FatI	CATG	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	267
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	2 cut(s)	191, 327
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	178, 269
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	61, 199
Hpy188III	TCNNGA	5 cut(s)	88, 98, 179, 278, 289
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	85, 286
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	4, 118, 320, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	60, 351
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	410
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	9 cut(s)	111, 132, 240, 274, 284, 291, 317, 324, 407
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	191, 327
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	412
MboI	GATC	1 cut(s)	410
MboII	GAAGA	7 cut(s)	170, 221, 224, 233, 236, 350, 392
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	2 cut(s)	122, 153
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	55, 95, 154, 193, 291, 328, 334, 346, 361
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	1 cut(s)	410
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	96, 392
PagI	TCATGA	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp1406I	AACGTT	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	96, 392
PspOMI	GGGCCC	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	390, 391
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SalI	GTCGAC	1 cut(s)	230
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	410
Sau96I	GGNCC	2 cut(s)	390, 391
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	249
Sse9I	AATT	2 cut(s)	122, 153
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	191, 327
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	7, 141
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	3 cut(s)	231, 360, 413
TasI	AATT	2 cut(s)	122, 153
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	83, 104
TspRI	CASTG	1 cut(s)	42
XagI	CCTNNNNNAGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	191, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.