Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Reverse (-)

13772054 .. 13775439

Gene Structure 3386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1146600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAGGGTGATGAACGTAATAAAGCCAAAGCCAAATCCACAGCAGCAATTGAGAGATTGGCAGCGCAAGCTTCGCCAAGAGTGCCGCAACATCGAACGACAAATTCGAGATATACAAAGAGAAGAGAAAAGTGTGCAGAAAGCAATCAGAGAGGCTGCCAAGAGAAATGACATGGGTTCTGCAAAGTCACTTGCTAAAGAAATTGTGAGATCTAGAAGGACAGTGAACCGTCTTCATGAAAATAGGGCACAACTGAATTCAATATCAATGCACCTTGGGGAGAGTGTTGCTATTGCCCGTACAGTGGGGCATTTATCCAAGAGTTCTGAGGTTATGAAGCTTGTCAATAACCTCATGAAGGCTCCTGAAGTGGCTGTTACGATGCAAGAATTTAGCAAGGAGATGACCAAGGCAGGAGTAATTGAAGAGGTGGTGAATGATAGTCTTGACACAGCACTAGACTCCGAGGACATAGAAGAAGAAATAGAAGAAGAAGTCGACAAAGTTTTGACTTCTATAGCTGGTGAGACTGCTGCCCAGCTTCCAGAAGCGGTCAGGAAGGAGAGGTTGAAGCAACCTGCTACTGCACAAGCTAGACAGGAGGAAGAGGCAATAGCTGAGGGTGTCGATGATGAGGCAGAGTTGGAAGAAATAAGGGCCCGGCTTGCAAACGTTAGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

229

Amino Acids

25.89

Weight (kDa)

5.54

Isoelectric Point (pI)

63.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	21 - 188	1.8e-33	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	2 cut(s)	88, 554
AclI	AACGTT	1 cut(s)	675
AcsI	RAATTY	3 cut(s)	105, 259, 392
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	307, 361
AgsI	TTSAA	3 cut(s)	264, 428, 574
AluBI	AGCT	6 cut(s)	73, 343, 524, 544, 596, 620
AluI	AGCT	6 cut(s)	73, 343, 524, 544, 596, 620
Alw26I	GTCTC	1 cut(s)	524
AoxI	GGCC	1 cut(s)	660
ApaI	GGGCCC	1 cut(s)	664
ApeKI	GCWGC	4 cut(s)	46, 64, 158, 536
ApoI	RAATTY	3 cut(s)	105, 259, 392
ArsI	GACNNNNNNTTYG	1 cut(s)	665
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	660, 661
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	3 cut(s)	22, 448, 539
BaeGI	GKGCMC	2 cut(s)	253, 664
BanII	GRGCYC	1 cut(s)	664
BbsI	GAAGAC	1 cut(s)	227
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	4 cut(s)	58, 76, 145, 523
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	3 cut(s)	216, 461, 597
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	5 cut(s)	47, 65, 88, 159, 537
BlsI	GCNGC	5 cut(s)	48, 66, 89, 160, 538
Bme1390I	CCNGG	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	660, 661
BmiI	GGNNCC	2 cut(s)	366, 662
BmrFI	CCNGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	664
BsaJI	CCNNGG	3 cut(s)	277, 411, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 361
BseDI	CCNNGG	3 cut(s)	277, 411, 468
BseLI	CCNNNNNNNGG	2 cut(s)	307, 361
BseMII	CTCAG	2 cut(s)	321, 612
BseSI	GKGCMC	2 cut(s)	253, 664
BseXI	GCAGC	4 cut(s)	58, 76, 145, 523
BseYI	CCCAGC	1 cut(s)	540
BsgI	GTGCAG	2 cut(s)	158, 573
BshFI	GGCC	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	307, 361
BsmAI	GTCTC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	662
Bsp120I	GGGCCC	1 cut(s)	660
Bsp1286I	GDGCHC	2 cut(s)	253, 664
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	2 cut(s)	88, 554
BspANI	GGCC	1 cut(s)	662
BspCNI	CTCAG	2 cut(s)	322, 613
BspHI	TCATGA	2 cut(s)	238, 357
BspLI	GGNNCC	2 cut(s)	366, 662
BspMI	ACCTGC	1 cut(s)	589
BssECI	CCNNGG	3 cut(s)	277, 411, 468
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	2 cut(s)	277, 411
Bst4CI	ACNGT	3 cut(s)	226, 233, 307
Bst6I	CTCTTC	3 cut(s)	120, 423, 603
BstC8I	GCNNGC	2 cut(s)	71, 669
BstDEI	CTNAG	2 cut(s)	330, 621
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 75, 84, 668
BstSCI	CCNGG	1 cut(s)	662
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	2 cut(s)	253, 664
BstV1I	GCAGC	4 cut(s)	58, 76, 145, 523
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	662
BtsIMutI	CAGTG	2 cut(s)	231, 312
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	2 cut(s)	71, 669
CciI	TCATGA	2 cut(s)	238, 357
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	660, 661
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	3 cut(s)	175, 239, 358
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	330, 621
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eam1104I	CTCTTC	3 cut(s)	120, 423, 603
EarI	CTCTTC	3 cut(s)	120, 423, 603
Eco130I	CCWWGG	2 cut(s)	277, 411
Eco24I	GRGCYC	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	277, 411
EcoT38I	GRGCYC	1 cut(s)	664
ErhI	CCWWGG	2 cut(s)	277, 411
FaeI	CATG	3 cut(s)	178, 242, 361
FaiI	YATR	8 cut(s)	116, 176, 240, 338, 359, 476, 521, 685
FatI	CATG	3 cut(s)	174, 238, 357
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	5 cut(s)	47, 65, 88, 159, 537
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	5 cut(s)	47, 65, 88, 159, 537
FspBI	CTAG	3 cut(s)	216, 461, 597
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	5 cut(s)	47, 65, 88, 159, 537
GsaI	CCCAGC	1 cut(s)	544
HaeIII	GGCC	1 cut(s)	662
HapII	CCGG	1 cut(s)	664
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	178, 242, 361
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	2 cut(s)	71, 341
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	3 cut(s)	22, 448, 539
Hpy166II	GTNNAC	2 cut(s)	229, 502
Hpy188I	TCNGA	3 cut(s)	152, 331, 469
Hpy188III	TCNNGA	8 cut(s)	110, 216, 239, 358, 368, 449, 548, 559
Hpy8I	GTNNAC	2 cut(s)	229, 502
HpyAV	CCTTC	3 cut(s)	213, 355, 556
HpyCH4III	ACNGT	3 cut(s)	226, 233, 307
HpyCH4IV	ACGT	2 cut(s)	18, 675
HpyCH4V	TGCA	6 cut(s)	139, 185, 274, 388, 590, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 75, 84, 668
HpyF3I	CTNAG	2 cut(s)	330, 621
HpySE526I	ACGT	2 cut(s)	18, 675
Hsp92II	CATG	3 cut(s)	178, 242, 361
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	381, 402, 510, 544, 554, 561, 587, 594, 677
Lsp1109I	GCAGC	4 cut(s)	58, 76, 145, 523
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	3 cut(s)	216, 461, 597
MaeII	ACGT	2 cut(s)	18, 675
MaeIII	GTNAC	2 cut(s)	189, 379
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	9 cut(s)	137, 227, 440, 491, 494, 503, 506, 620, 662
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	253, 664
MluCI	AATT	6 cut(s)	50, 105, 204, 259, 392, 423
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	627
MspI	CCGG	1 cut(s)	664
MspR9I	CCNGG	1 cut(s)	664
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	4 cut(s)	70, 75, 84, 668
NciI	CCSGG	1 cut(s)	664
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	3 cut(s)	178, 242, 361
NlaIV	GGNNCC	2 cut(s)	366, 662
NmuCI	GTSAC	1 cut(s)	189
PagI	TCATGA	2 cut(s)	238, 357
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	48, 66, 89, 160, 538
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Psp1406I	AACGTT	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	366, 662
PspOMI	GGGCCC	1 cut(s)	660
PspPI	GGNCC	2 cut(s)	660, 661
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SalI	GTCGAC	1 cut(s)	500
SatI	GCNGC	5 cut(s)	47, 65, 88, 159, 537
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	2 cut(s)	660, 661
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	2 cut(s)	253, 664
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	519
Sse9I	AATT	6 cut(s)	50, 105, 204, 259, 392, 423
SsiI	CCGC	2 cut(s)	88, 554
SspMI	CTAG	3 cut(s)	216, 461, 597
StyD4I	CCNGG	1 cut(s)	662
StyI	CCWWGG	2 cut(s)	277, 411
TaaI	ACNGT	3 cut(s)	226, 233, 307
TaiI	ACGT	2 cut(s)	21, 678
TaqI	TCGA	4 cut(s)	96, 109, 501, 630
TasI	AATT	6 cut(s)	50, 105, 204, 259, 392, 423
TauI	GCSGC	1 cut(s)	90
TscAI	CASTG	2 cut(s)	231, 312
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	4 cut(s)	46, 64, 158, 536
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	5 cut(s)	29, 227, 255, 353, 374
TspRI	CASTG	2 cut(s)	231, 312
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	3 cut(s)	105, 259, 392
XbaI	TCTAGA	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	3 cut(s)	216, 461, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.