Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368135.1

Orthogroup ID

OG0003851

Physical Location & Seq

Genomic Coordinates Reverse (-)

757 .. 1110

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 269 bp

tgattgaagaagttgtaaacgatactcttgatacagcattagattcagaagatatagaagaggaaactgaggaagaagttgagaaggttctcagtcaaatagctggtgagacggctgcccagcttcctgaagctgtcaggaaagagaggatcaagttacctgcccagggagctagtggttcacgagaagaagaagctacagcagaaggttcagatgacgaggaagaattggaagtgttgagagcgcggcttgctcaagtcagatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005829 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

88

Amino Acids

9.65

Weight (kDa)

4.07

Isoelectric Point (pI)

73.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45000 AT3G45000 AT5G22950
fragaria_vesca	FvH4_3g30890 FvH4_7g18680
malus_domestica	MD00G1032300.v1.1 MD01G1102500.v1.1 MD11G1146600.v1.1
prunus_persica	Prupe.2G208100_v2.0.a1 Prupe.6G109700_v2.0.a1
pyrus_communis	pycom01g12890 pycom11g11960
rosa_chinensis	RchiOBHm_Chr1g0362411 RchiOBHm_Chr5g0057111 RchiOBHm_Chr5g0057131
rosa_multiflora	Rmu_co8368135.1_g000001 Rmu_sc0001334.1_g000002 Rmu_sc0001334.1_g000003 Rmu_sc0013947.1_g000009 Rmu_sc0037606.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023090 Rroxscaffold_4G00294200
rosa_rugosa	Rorug01G0297900 Rorug01G0298000 Rorug05G0305800
rosa_samantha	Rh1AG307100 Rh1BG270600 Rh1CG288000 Rh1DG300800 Rh5AG375100 Rh5CG409600 Rh5DG400100
rosa_wichuraiana	Rw1G027270 Rw5G035310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	168
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	5 cut(s)	103, 123, 133, 172, 196
AluI	AGCT	5 cut(s)	103, 123, 133, 172, 196
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	118
BauI	CACGAG	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	168
BisI	GCNGC	2 cut(s)	116, 247
BlsI	GCNGC	2 cut(s)	117, 248
Bme1390I	CCNGG	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	164, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	164, 165
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	59, 105
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	103
BsmBI	CGTCTC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	149, 262
BspACI	CCGC	1 cut(s)	246
BspCNI	CTCAG	2 cut(s)	60, 104
BspFNI	CGCG	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	164, 165
BssMI	GATC	2 cut(s)	149, 262
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	68, 91
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	152, 265
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	149, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 250
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	197
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	1 cut(s)	246
CviJI	RGCY	7 cut(s)	103, 115, 123, 133, 172, 196, 249
CviKI_1	RGCY	7 cut(s)	103, 115, 123, 133, 172, 196, 249
DdeI	CTNAG	2 cut(s)	68, 91
DpnI	GATC	2 cut(s)	151, 264
DpnII	GATC	2 cut(s)	149, 262
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	103
FaiI	YATR	2 cut(s)	55, 267
Fnu4HI	GCNGC	2 cut(s)	116, 247
Fsp4HI	GCNGC	2 cut(s)	116, 247
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	2 cut(s)	116, 247
GsaI	CCCAGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	18, 181
Hpy188I	TCNGA	3 cut(s)	48, 213, 262
Hpy188III	TCNNGA	4 cut(s)	28, 127, 138, 182
Hpy8I	GTNNAC	2 cut(s)	18, 181
HpyAV	CCTTC	2 cut(s)	78, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 250
HpyF3I	CTNAG	2 cut(s)	68, 91
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	149, 262
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	7 cut(s)	89, 123, 133, 140, 151, 173, 178
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	151, 264
MboI	GATC	2 cut(s)	149, 262
MboII	GAAGA	7 cut(s)	19, 61, 70, 85, 199, 202, 235
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	4 cut(s)	54, 63, 140, 213
MspR9I	CCNGG	1 cut(s)	166
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	169, 250
NdeII	GATC	2 cut(s)	149, 262
PasI	CCCWGGG	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	117, 248
Psp6I	CCWGG	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	164
SatI	GCNGC	2 cut(s)	116, 247
Sau3AI	GATC	2 cut(s)	149, 262
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	8 cut(s)	89, 105, 125, 135, 162, 174, 198, 210
SfcI	CTRYAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	164
TasI	AATT	1 cut(s)	226
TauI	GCSGC	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.