AT3G47800

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004802
Physical Location & Seq
Forward (+)
17634804 .. 17637204
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47800.1

Sequence Viewer

Length: 1077 bp
ATGGTGAAGAAGCAATCGCCATTACACGTTGTCGGTGTGTCTGTTTTGATGGTGTTGTTATGCAGTGTTAATTACAGTCTCTGTGAAAAGATCAAAACGTATAAGCTCACAAGAGGAAGCTTAAGTGTTACTTTCACTAACTATGGTGCTGTCATGACCTCTCTTCTCCTCCCTGACAGACATGGAAAACAAGACGATGTTGTTCTTGGATTTGATACTGTTGATGGTTACAAGAATGATACAACATATTTTGGAGCAATTGTGGGAAGAGTGGCTAATAGAATAGGAGGTGCTAAATTCAAGTTAAATGGTCATCTCTACAAAACCGATCCCAACGAAGGCCGTAACACTCTCCATGGTGGTTCAAAGGGATTTAGTGATGTGATTTGGTCAGTCCAAAAGTATGTTCCCACTAGTCACATTACTTTCACATACGATAGCTTCGACGGTGAAGAAGGTTTTCCGGGCAATGTGACGGTGAAAGTGACGTACATGTTGATCGGAGAAAACAAACTCGGTGTAAAAATGGAAGCAAAGCCACTCAACAAACCTACACCAATCAACTTAGCTCTCCACACTTACTGGAACCTCCACAGCCACAACTCCGGGAACATCCTCTCCCACAAAATTCAACTCCTCGCCGGAAAAATCACTCCCGTCGACGACAAACTCATTCCCACCGGAGAAATCACCTCCATTACCGGAACTCCTTACGATTTCCTCGAGCCACGTGAGATCGGTAGCCGGATCCACGAATTACCCGGCGGTTACGACATCAATTACGTGATCGACGGACCGATCGGGAAACATCTGAGGAAAACTGCGGTTGTGACGGAGCAAGTCACCGGGAGGAAGATGGAGCTGTGGACGAATCAGCCTGGTGTTCAGTTTTACACGAGTAATATGATGAAACGTGTCGTCGGTAAAGGTAAAGCCGTTTATGAGAAATACGGTGGCTTGTGTTTGGAGACTCAAGGCTTCCCAGATTCCGTCAATCACAAGAACTTTCCGTCGCAGATTGTTAATCCCGGCGAGAGTTATTTGCATGTTATGCTCTTCAGATTCACTGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

358

Amino Acids

39.71

Weight (kDa)

9.12

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 33 - 353 1.5e-96 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 660
AciI CCGC 2 cut(s) 765, 824
AclWI GGATC 3 cut(s) 323, 742, 755
AcsI RAATTY 2 cut(s) 296, 627
AcuI CTGAAG 1 cut(s) 1042
AcvI CACGTG 1 cut(s) 731
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 338
AflII CTTAAG 1 cut(s) 121
AflIII ACRYGT 3 cut(s) 25, 492, 913
AgsI TTSAA 3 cut(s) 301, 366, 632
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 1 cut(s) 877
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AloI GAACNNNNNNTCC 2 cut(s) 602, 634
AluBI AGCT 5 cut(s) 106, 120, 441, 569, 862
AluI AGCT 5 cut(s) 106, 120, 441, 569, 862
Alw26I GTCTC 2 cut(s) 83, 962
AlwI GGATC 3 cut(s) 323, 742, 755
AlwNI CAGNNNCTG 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 722
AoxI GGCC 1 cut(s) 340
ApoI RAATTY 2 cut(s) 296, 627
Asp700I GAANNNNTTC 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 794
AsuC2I CCSGG 5 cut(s) 465, 607, 762, 847, 1029
AsuHPI GGTGA 5 cut(s) 16, 461, 490, 682, 835
AvaI CYCGRG 1 cut(s) 722
AvaII GGWCC 1 cut(s) 794
BamHI GGATCC 1 cut(s) 747
BauI CACGAG 1 cut(s) 895
BbrPI CACGTG 1 cut(s) 731
BccI CCATC 3 cut(s) 43, 218, 850
BceAI ACGGC 2 cut(s) 327, 920
BciT130I CCWGG 1 cut(s) 879
BcnI CCSGG 5 cut(s) 465, 607, 762, 847, 1029
BcoDI GTCTC 2 cut(s) 83, 962
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 1 cut(s) 414
BfrI CTTAAG 1 cut(s) 121
Bme1390I CCNGG 6 cut(s) 465, 607, 762, 847, 879, 1029
Bme18I GGWCC 1 cut(s) 794
BmeT110I CYCGRG 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 2 cut(s) 587, 749
BmrFI CCNGG 6 cut(s) 465, 607, 762, 847, 879, 1029
BpuEI CTTGAG 1 cut(s) 957
BpuMI CCSGG 5 cut(s) 465, 607, 762, 847, 1029
BsaAI YACGTR 2 cut(s) 731, 784
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 2 cut(s) 680, 701
BsaXI ACNNNNNCTCC 6 cut(s) 246, 276, 602, 632, 691, 721
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 1 cut(s) 879
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 803
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 2 cut(s) 158, 626
Bsh1285I CGRYCG 1 cut(s) 801
BshFI GGCC 1 cut(s) 342
BsiEI CGRYCG 1 cut(s) 801
BsiHKCI CYCGRG 1 cut(s) 722
BsiSI CCGG 9 cut(s) 464, 606, 642, 681, 702, 745, 762, 846, 1029
BslI CCNNNNNNNGG 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 83, 962
BsnI GGCC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 722
Bsp143I GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 2 cut(s) 765, 824
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 804
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 587, 749
BspPI GGATC 3 cut(s) 323, 742, 755
BspQI GCTCTTC 1 cut(s) 1061
BspTI CTTAAG 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 475
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
BssSI CACGAG 1 cut(s) 895
BssT1I CCWWGG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 895
Bst2UI CCWGG 1 cut(s) 879
Bst4CI ACNGT 5 cut(s) 77, 220, 449, 478, 953
Bst6I CTCTTC 3 cut(s) 168, 262, 1061
BstAFI CTTAAG 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 1051
BstBAI YACGTR 2 cut(s) 731, 784
BstDEI CTNAG 2 cut(s) 565, 812
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 612
BstKTI GATC 7 cut(s) 93, 331, 501, 738, 750, 789, 801
BstMAI GTCTC 2 cut(s) 83, 962
BstMBI GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
BstMCI CGRYCG 1 cut(s) 801
BstMWI GCNNNNNNNGC 1 cut(s) 1051
BstNI CCWGG 1 cut(s) 879
BstNSI RCATGY 2 cut(s) 496, 1049
BstSCI CCNGG 6 cut(s) 463, 605, 760, 845, 877, 1027
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 612
BtsI GCAGTG 2 cut(s) 70, 1065
BtsIMutI CAGTG 2 cut(s) 70, 1065
CaiI CAGNNNCTG 1 cut(s) 81
CciI TCATGA 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 794
CpoI CGGWCCG 1 cut(s) 794
Csp6I GTAC 1 cut(s) 490
CspI CGGWCCG 1 cut(s) 794
CviAII CATG 5 cut(s) 154, 182, 356, 493, 1046
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 2 cut(s) 565, 812
DpnI GATC 7 cut(s) 92, 330, 500, 737, 749, 788, 800
DpnII GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
Eam1104I CTCTTC 3 cut(s) 168, 262, 1061
EarI CTCTTC 3 cut(s) 168, 262, 1061
Eco130I CCWWGG 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 1042
Eco72I CACGTG 1 cut(s) 731
Eco88I CYCGRG 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 877
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 5 cut(s) 157, 185, 359, 496, 1049
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 5 cut(s) 153, 181, 355, 492, 1045
FblI GTMKAC 1 cut(s) 660
FokI GGATG 1 cut(s) 599
FspBI CTAG 1 cut(s) 414
HaeIII GGCC 1 cut(s) 342
HapII CCGG 9 cut(s) 464, 606, 642, 681, 702, 745, 762, 846, 1029
Hin1II CATG 5 cut(s) 157, 185, 359, 496, 1049
HincII GTYRAC 1 cut(s) 661
HindII GTYRAC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 4 cut(s) 871, 970, 986, 1062
HpaII CCGG 9 cut(s) 464, 606, 642, 681, 702, 745, 762, 846, 1029
HphI GGTGA 5 cut(s) 16, 461, 490, 682, 835
Hpy166II GTNNAC 2 cut(s) 661, 867
Hpy188I TCNGA 3 cut(s) 503, 813, 1061
Hpy188III TCNNGA 2 cut(s) 154, 802
Hpy8I GTNNAC 2 cut(s) 661, 867
Hpy99I CGWCG 6 cut(s) 449, 662, 665, 794, 923, 1015
HpyAV CCTTC 2 cut(s) 332, 449
HpyCH4III ACNGT 5 cut(s) 77, 220, 449, 478, 953
HpyCH4IV ACGT 6 cut(s) 27, 98, 488, 730, 783, 913
HpyCH4V TGCA 2 cut(s) 63, 1045
HpyF10VI GCNNNNNNNGC 1 cut(s) 1051
HpyF3I CTNAG 2 cut(s) 565, 812
HpySE526I ACGT 6 cut(s) 27, 98, 488, 730, 783, 913
Hsp92II CATG 5 cut(s) 157, 185, 359, 496, 1049
Kzo9I GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
LguI GCTCTTC 1 cut(s) 1061
LmnI GCTCC 3 cut(s) 254, 835, 859
MaeI CTAG 1 cut(s) 414
MaeII ACGT 6 cut(s) 27, 98, 488, 730, 783, 913
MaeIII GTNAC 9 cut(s) 127, 227, 344, 416, 472, 484, 767, 829, 841
MalI GATC 7 cut(s) 92, 330, 500, 737, 749, 788, 800
MboI GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
MboII GAAGA 6 cut(s) 19, 155, 279, 464, 865, 1048
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 1 cut(s) 747
MluCI AATT 6 cut(s) 70, 258, 296, 627, 755, 778
MlyI GAGTC 1 cut(s) 964
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 4 cut(s) 69, 122, 305, 1023
MspCI CTTAAG 1 cut(s) 121
MspI CCGG 9 cut(s) 464, 606, 642, 681, 702, 745, 762, 846, 1029
MspR9I CCNGG 6 cut(s) 465, 607, 762, 847, 879, 1029
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 879
MwoI GCNNNNNNNGC 1 cut(s) 1051
NciI CCSGG 5 cut(s) 465, 607, 762, 847, 1029
NcoI CCATGG 1 cut(s) 355
NdeII GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
NlaIII CATG 5 cut(s) 157, 185, 359, 496, 1049
NlaIV GGNNCC 2 cut(s) 587, 749
NmuCI GTSAC 5 cut(s) 416, 472, 484, 829, 841
NspI RCATGY 2 cut(s) 496, 1049
PaeR7I CTCGAG 1 cut(s) 722
PagI TCATGA 1 cut(s) 153
PciI ACATGT 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 1061
PcsI WCGNNNNNNNCGW 2 cut(s) 441, 720
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 3 cut(s) 871, 986, 1062
PfoI TCCNGGA 1 cut(s) 605
Ple19I CGATCG 1 cut(s) 801
PleI GAGTC 1 cut(s) 964
PmaCI CACGTG 1 cut(s) 731
PmlI CACGTG 1 cut(s) 731
PpsI GAGTC 1 cut(s) 964
Ppu21I YACGTR 2 cut(s) 731, 784
PscI ACATGT 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 877
PspCI CACGTG 1 cut(s) 731
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 2 cut(s) 587, 749
PspPI GGNCC 1 cut(s) 794
PspXI VCTCGAGB 1 cut(s) 722
PstNI CAGNNNCTG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 747
PvuI CGATCG 1 cut(s) 801
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
Rsr2I CGGWCCG 1 cut(s) 794
RsrII CGGWCCG 1 cut(s) 794
SalI GTCGAC 1 cut(s) 659
SapI GCTCTTC 1 cut(s) 1061
SaqAI TTAA 4 cut(s) 69, 122, 305, 1023
Sau3AI GATC 7 cut(s) 90, 328, 498, 735, 747, 786, 798
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 1 cut(s) 964
ScrFI CCNGG 6 cut(s) 465, 607, 762, 847, 879, 1029
Sfr274I CTCGAG 1 cut(s) 722
SgrDI CGTCGACG 1 cut(s) 659
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 1 cut(s) 722
SmlI CTYRAG 3 cut(s) 121, 722, 972
SmoI CTYRAG 3 cut(s) 121, 722, 972
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 6 cut(s) 70, 258, 296, 627, 755, 778
SsiI CCGC 2 cut(s) 765, 824
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 6 cut(s) 463, 605, 760, 845, 877, 1027
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 5 cut(s) 77, 220, 449, 478, 953
TaiI ACGT 6 cut(s) 30, 101, 491, 733, 786, 916
TaqI TCGA 4 cut(s) 444, 660, 723, 789
TaqII GACCGA 1 cut(s) 811
TasI AATT 6 cut(s) 70, 258, 296, 627, 755, 778
TfiI GAWTC 3 cut(s) 871, 986, 1062
Tru1I TTAA 4 cut(s) 69, 122, 305, 1023
Tru9I TTAA 4 cut(s) 69, 122, 305, 1023
TscAI CASTG 2 cut(s) 70, 1072
TseFI GTSAC 5 cut(s) 416, 472, 484, 829, 841
Tsp45I GTSAC 5 cut(s) 416, 472, 484, 829, 841
TspDTI ATGAA 1 cut(s) 923
TspGWI ACGGA 4 cut(s) 807, 848, 979, 999
TspRI CASTG 2 cut(s) 70, 1072
Vha464I CTTAAG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 2 cut(s) 296, 627
XceI RCATGY 2 cut(s) 496, 1049
XhoI CTCGAG 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 459
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.