Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004802

Physical Location & Seq

Genomic Coordinates Reverse (-)

83463232 .. 83465924

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG607000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTAATTCTGCAGAATGATACTTCATACATCGGTGCTATTGTCGGACGCGTTGCTAACAGAATTGGTGGCGCTCAATTTACTTTGAATGGAACCCATTACAAGCTAGTTGCTAATGAAGGAAAAAACATGCTTCATGGTGGGCTTAGAGGATTTAGTGATGTTGTTTGGAAAGTGAAGAAGTATAAGAATGAAGGTCATACTCCTTCCATTGTCTTCACTTATCATAGTGCTGATGGGGAACAAGGGTTTCCTGGAGATGTTATTGTCAGTGTCAGCTACACACTCCTTGGAGACAAACAATTGATCGTGAAAATGAATGCAAAGGCCCTAAACAAGCCAACTCCAGTGAATCTAGCTCAGCACACTTACTGGAACCTTGGCGGCCACAATAGTGGTGACATTCTCTCCCAACACATCCAGATCTTTGCATCCAAAATCACTCTGGTAGATAGCGGTCTCATCCCCACCGGAAAATTTGCATCCGTGAAAGGCACACCCTATGATTTCCTCAAGCCTCAATCAGTTGGAAGCAGGATCAACAAGCTTACGGCAACCAAAGGTTATGACATCAACTACGTGCTTGATGGCCCAGCTGGCAACAAGTTGAAGCGAGCAGCGGTGGTGCGTGACAGCAAGTCAGGAAGGATGATGGAGCTCTCAACAAATGTTCCCGGTATGCAGTTCTACACAAGCAACTATCTCCAGGATGTGAAGGGGAAAGGTGGGTTTGTATACCAACCACGTGCAGCATTGTGTTTGGAAACTCAGGGATTTCCTGATGCTGTGAACCACCCTAATTTCCCTTCAACAATTGTGACTCCAACAAAGTCCTATAGGCATTATATGCTGTTCAAGTTTTCAACTACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

291

Amino Acids

31.83

Weight (kDa)

9.69

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	5 - 285	2.2e-77	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47800
fragaria_vesca	FvH4_5g15261 FvH4_6g49081
malus_domestica	MD14G1196700.v1.1 MD17G1048800.v1.1
prunus_persica	Prupe.3G270200_v2.0.a1 Prupe.5G188800_v2.0.a1 Prupe.5G188800_v2.0.a1
pyrus_communis	pycom14g16350 pycom17g04380
rosa_chinensis	RchiOBHm_Chr2g0168911 RchiOBHm_Chr7g0180821
rosa_laevigata	RLG00000005227 RLG00000021813
rosa_multiflora	Rmu_sc0007457.1_g000006 Rmu_ssc0000393.1_g000013
rosa_roxburghii	Rroxscaffold_2G00082600 Rroxscaffold_3G00272500
rosa_rugosa	Rorug02G0536000 Rorug06G0436400.1 Rorug06G0436500.1 Rorug06G0436600
rosa_samantha	Rh2AG607000 Rh2BG619800 Rh2CG588400 Rh2DG630500 Rh7BG037900 Rh7CG039400 Rh7DG037900
rosa_wichuraiana	Rw2G050330 Rw7G003140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	735
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	384, 456, 620
AclWI	GGATC	1 cut(s)	545
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	476
AcvI	CACGTG	1 cut(s)	746
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	5 cut(s)	88, 610, 810, 856, 864
AhdI	GACNNNNNGTC	1 cut(s)	637
AjnI	CCWGG	2 cut(s)	253, 705
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	7 cut(s)	106, 279, 359, 547, 596, 658, 872
AluI	AGCT	7 cut(s)	106, 279, 359, 547, 596, 658, 872
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	2 cut(s)	288, 464
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	3 cut(s)	327, 385, 589
ApeKI	GCWGC	2 cut(s)	617, 749
ApoI	RAATTY	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	328, 590
AsuC2I	CCSGG	1 cut(s)	675
AsuHPI	GGTGA	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	660
BbrPI	CACGTG	1 cut(s)	746
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	2 cut(s)	629, 761
BccI	CCATC	3 cut(s)	230, 581, 646
BceAI	ACGGC	1 cut(s)	567
BciT130I	CCWGG	2 cut(s)	255, 707
BcnI	CCSGG	1 cut(s)	675
BcoDI	GTCTC	2 cut(s)	288, 464
BfaI	CTAG	2 cut(s)	107, 356
BfmI	CTRYAG	3 cut(s)	11, 835, 867
BfoI	RGCGCY	1 cut(s)	75
BglI	GCCNNNNNGGC	1 cut(s)	597
BglII	AGATCT	1 cut(s)	423
BisI	GCNGC	3 cut(s)	385, 618, 750
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	3 cut(s)	386, 619, 751
Bme1390I	CCNGG	3 cut(s)	255, 675, 707
BmeRI	GACNNNNNGTC	1 cut(s)	637
BmgT120I	GGNCC	2 cut(s)	328, 590
BmiI	GGNNCC	2 cut(s)	94, 377
BmrFI	CCNGG	3 cut(s)	255, 675, 707
BmsI	GCATC	3 cut(s)	440, 491, 772
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	3 cut(s)	276, 330, 689
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	675
BsaAI	YACGTR	2 cut(s)	580, 746
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	289, 379
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bse1I	ACTGG	2 cut(s)	347, 377
BseBI	CCWGG	2 cut(s)	255, 707
BseDI	CCNNGG	2 cut(s)	289, 379
BseGI	GGATG	6 cut(s)	417, 431, 462, 482, 654, 715
BseMII	CTCAG	2 cut(s)	374, 782
BseNI	ACTGG	2 cut(s)	347, 377
BseXI	GCAGC	2 cut(s)	629, 761
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	329, 387, 591
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	471, 675
BsmAI	GTCTC	2 cut(s)	288, 464
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	329, 387, 591
Bso31I	GGTCTC	1 cut(s)	464
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	3 cut(s)	306, 423, 537
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	3 cut(s)	384, 456, 620
BspANI	GGCC	3 cut(s)	329, 387, 591
BspCNI	CTCAG	2 cut(s)	373, 781
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	94, 377
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	545
BspTNI	GGTCTC	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	347, 377
BssECI	CCNNGG	2 cut(s)	289, 379
BssMI	GATC	3 cut(s)	306, 423, 537
BssNAI	GTATAC	1 cut(s)	736
BssT1I	CCWWGG	2 cut(s)	289, 379
Bst1107I	GTATAC	1 cut(s)	736
Bst2UI	CCWGG	2 cut(s)	255, 707
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstBAI	YACGTR	2 cut(s)	580, 746
BstC8I	GCNNGC	2 cut(s)	598, 615
BstDEI	CTNAG	3 cut(s)	146, 360, 768
BstF5I	GGATG	6 cut(s)	417, 431, 462, 482, 654, 715
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	309, 426, 540
BstMAI	GTCTC	2 cut(s)	288, 464
BstMBI	GATC	3 cut(s)	306, 423, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	597, 847
BstNI	CCWGG	2 cut(s)	255, 707
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	3 cut(s)	253, 673, 705
BstSFI	CTRYAG	3 cut(s)	11, 835, 867
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	629, 761
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	423
BstZ17I	GTATAC	1 cut(s)	736
BsuRI	GGCC	3 cut(s)	329, 387, 591
BtsCI	GGATG	6 cut(s)	417, 431, 462, 482, 654, 715
BtsIMutI	CAGTG	2 cut(s)	277, 354
Cac8I	GCNNGC	2 cut(s)	598, 615
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	328, 590
CseI	GACGC	1 cut(s)	57
CviAII	CATG	2 cut(s)	130, 137
DdeI	CTNAG	3 cut(s)	146, 360, 768
DpnI	GATC	3 cut(s)	308, 425, 539
DpnII	GATC	3 cut(s)	306, 423, 537
DriI	GACNNNNNGTC	1 cut(s)	637
EaeI	YGGCCR	1 cut(s)	385
Eam1105I	GACNNNNNGTC	1 cut(s)	637
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	2 cut(s)	289, 379
Eco24I	GRGCYC	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	658
Eco72I	CACGTG	1 cut(s)	746
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	253, 705
EcoT14I	CCWWGG	2 cut(s)	289, 379
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	2 cut(s)	289, 379
FaeI	CATG	2 cut(s)	133, 140
FatI	CATG	2 cut(s)	129, 136
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	3 cut(s)	385, 618, 750
FokI	GGATG	6 cut(s)	404, 418, 449, 469, 661, 722
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	385, 618, 750
FspBI	CTAG	2 cut(s)	107, 356
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	3 cut(s)	385, 618, 750
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	3 cut(s)	276, 330, 689
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	329, 387, 591
HapII	CCGG	2 cut(s)	471, 675
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	133, 140
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	545
HinfI	GANTC	2 cut(s)	352, 820
HpaII	CCGG	2 cut(s)	471, 675
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	736, 790
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	4 cut(s)	310, 421, 642, 779
Hpy8I	GTNNAC	2 cut(s)	736, 790
HpyAV	CCTTC	6 cut(s)	113, 188, 216, 639, 709, 816
HpyCH4IV	ACGT	2 cut(s)	579, 745
HpyCH4V	TGCA	6 cut(s)	13, 323, 431, 482, 682, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	597, 847
HpyF3I	CTNAG	3 cut(s)	146, 360, 768
HpySE526I	ACGT	2 cut(s)	579, 745
Hsp92II	CATG	2 cut(s)	133, 140
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	306, 423, 537
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	629, 761
LweI	GCATC	3 cut(s)	440, 491, 772
MaeI	CTAG	2 cut(s)	107, 356
MaeII	ACGT	2 cut(s)	579, 745
MaeIII	GTNAC	3 cut(s)	398, 629, 817
MalI	GATC	3 cut(s)	308, 425, 539
MboI	GATC	3 cut(s)	306, 423, 537
MboII	GAAGA	2 cut(s)	190, 208
MfeI	CAATTG	2 cut(s)	302, 813
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	7 cut(s)	6, 63, 77, 302, 476, 799, 813
MluI	ACGCGT	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	3 cut(s)	25, 508, 848
MnlI	CCTC	3 cut(s)	143, 521, 528
MseI	TTAA	1 cut(s)	874
MslI	CAYNNNNRTG	1 cut(s)	393
MspA1I	CMGCKG	2 cut(s)	596, 620
MspI	CCGG	2 cut(s)	471, 675
MspR9I	CCNGG	3 cut(s)	255, 675, 707
MunI	CAATTG	2 cut(s)	302, 813
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	2 cut(s)	255, 707
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	597, 847
NciI	CCSGG	1 cut(s)	675
NdeII	GATC	3 cut(s)	306, 423, 537
NlaIII	CATG	2 cut(s)	133, 140
NlaIV	GGNNCC	2 cut(s)	94, 377
NmuCI	GTSAC	3 cut(s)	398, 629, 817
NspI	RCATGY	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	393
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	352
PfoI	TCCNGGA	2 cut(s)	253, 705
PkrI	GCNGC	3 cut(s)	386, 619, 751
PleI	GAGTC	1 cut(s)	814
PmaCI	CACGTG	1 cut(s)	746
PmlI	CACGTG	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	814
Ppu21I	YACGTR	2 cut(s)	580, 746
Psp124BI	GAGCTC	1 cut(s)	660
Psp6I	CCWGG	2 cut(s)	253, 705
PspCI	CACGTG	1 cut(s)	746
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	2 cut(s)	253, 705
PspN4I	GGNNCC	2 cut(s)	94, 377
PspPI	GGNCC	2 cut(s)	328, 590
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	1 cut(s)	874
SatI	GCNGC	3 cut(s)	385, 618, 750
Sau3AI	GATC	3 cut(s)	306, 423, 537
Sau96I	GGNCC	2 cut(s)	328, 590
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	3 cut(s)	255, 675, 707
SduI	GDGCHC	1 cut(s)	660
SfaNI	GCATC	3 cut(s)	440, 491, 772
SfcI	CTRYAG	3 cut(s)	11, 835, 867
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	7 cut(s)	6, 63, 77, 302, 476, 799, 813
SsiI	CCGC	3 cut(s)	384, 456, 620
SspMI	CTAG	2 cut(s)	107, 356
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	253, 673, 705
StyI	CCWWGG	2 cut(s)	289, 379
TaiI	ACGT	2 cut(s)	582, 748
TasI	AATT	7 cut(s)	6, 63, 77, 302, 476, 799, 813
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	874
Tru9I	TTAA	1 cut(s)	874
TscAI	CASTG	2 cut(s)	277, 354
TseFI	GTSAC	3 cut(s)	398, 629, 817
TseI	GCWGC	2 cut(s)	617, 749
Tsp45I	GTSAC	3 cut(s)	398, 629, 817
TspDTI	ATGAA	5 cut(s)	15, 125, 132, 207, 332
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	2 cut(s)	277, 354
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	2 cut(s)	107, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.