Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004802

Physical Location & Seq

Genomic Coordinates Forward (+)

2979962 .. 2982827

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAACATTTTACTCAGCAAGATGTCCAACACTCGTGTTCTACTTTGTTTCATCGTTCTAGCCGCTTTCGCGATTGCGAATGCTTCTGGTTCCGAATCAAAGGAAAGGATTGGTGTGTATGCTCTCAAGAAGGGTGATCTTTCAGTCAACTTCACCAACTGGGGTGCAACTATCATCTCCCTTGTTTTACCGGACAAAAATGGAAAGCTTGCTGATGTAGTTCTCGGGTACGATTCCGTCAAAGAGTACACGAATGATACTTCTTACATCGGTTCTGTCGTTGGACGGGTTGCTAACAGAATTGGAGGAGCTCAATTTACGTTAAATGGAACTCACTACAAGTTAGTTGCTAATGAGGGAAAAAACATACTTCATGGTGGCAAAAAAGGATTCAGTGATGTTGTCTGGAAAGTGATAAAGCACAAGAACGAAGGCCATTCTCCTTCCATTGTCTTCACCTATCATAGTGCCGATGGCGAACAAGGATTTCCCGGCGATGTGCTAGCTACCGTGAGCTATACCCTCACTGGAGACAACCAACTGAGCATAAAAATGAAAGCTAAGGCTCTAAACAAGCCGACTCCGGTGAGTCTAGCTCAACACACCTACTGGAACCTCGGCGGTCACAACAGTGGCGATATTCTGTCCCAAGACGTCACGATCTTTGCCTCTCATTACACTCCCGTCGACAGTCACCTCATTCCCACCGGCAAAATAGCTTCTGTAAAAGGAACCCCGTACGACTTCCTCAAGCCAAATGATGTGGGAAGCAGGATCAACAAGCTGCCTAGCGGTTACGACATCAACTACTGCCTCGACAGCAGCGGTGTAGGCAACAAACTGAGGCCCGCCGTGGTGGTGCACGACAAAAAGTCCGGGAGGGTTTTAGAGCTGTCGACGAATGCGCCCGGCTTGCAGTTCTACACGAGTAACTCTCTCAAGGATGTGAAGGGGAAAGGAGGGTTTGTGTATGAACCGCATGCAGCGTTGTGCTTGGAGACTCAAGGGTTTCCGGATTCTGTCAATCACCCTAATTTCCCTTCCACAATTGTGACTCCTAAAAAGCCTTACAAGCATTTTATGCTTTTTAAGTTTTCAATTAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

370

Amino Acids

39.95

Weight (kDa)

9.36

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47800
fragaria_vesca	FvH4_5g15261 FvH4_6g49081
malus_domestica	MD14G1196700.v1.1 MD17G1048800.v1.1
prunus_persica	Prupe.3G270200_v2.0.a1 Prupe.5G188800_v2.0.a1 Prupe.5G188800_v2.0.a1
pyrus_communis	pycom14g16350 pycom17g04380
rosa_chinensis	RchiOBHm_Chr2g0168911 RchiOBHm_Chr7g0180821
rosa_laevigata	RLG00000005227 RLG00000021813
rosa_multiflora	Rmu_sc0007457.1_g000006 Rmu_ssc0000393.1_g000013
rosa_roxburghii	Rroxscaffold_2G00082600 Rroxscaffold_3G00272500
rosa_rugosa	Rorug02G0536000 Rorug06G0436400.1 Rorug06G0436500.1 Rorug06G0436600
rosa_samantha	Rh2AG607000 Rh2BG619800 Rh2CG588400 Rh2DG630500 Rh7BG037900 Rh7CG039400 Rh7DG037900
rosa_wichuraiana	Rw2G050330 Rw7G003140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	657
AccI	GTMKAC	2 cut(s)	687, 896
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	1012
AciI	CCGC	6 cut(s)	63, 621, 792, 825, 849, 977
AclWI	GGATC	1 cut(s)	782
AcyI	GRCGYC	1 cut(s)	654
AfaI	GTAC	3 cut(s)	230, 248, 740
AgsI	TTSAA	1 cut(s)	1098
AhdI	GACNNNNNGTC	1 cut(s)	871
AleI	CACNNNNGTG	2 cut(s)	630, 1049
Alw21I	GWGCWC	2 cut(s)	313, 864
Alw26I	GTCTC	2 cut(s)	525, 992
Alw44I	GTGCAC	1 cut(s)	860
AlwI	GGATC	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	1012
AoxI	GGCC	2 cut(s)	433, 845
ApaLI	GTGCAC	1 cut(s)	860
ApeKI	GCWGC	3 cut(s)	784, 822, 983
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	1 cut(s)	846
AsuC2I	CCSGG	3 cut(s)	492, 877, 909
AsuHPI	GGTGA	6 cut(s)	145, 146, 448, 598, 686, 1019
AsuNHI	GCTAGC	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	864
BanII	GRGCYC	1 cut(s)	313
BauI	CACGAG	2 cut(s)	33, 925
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	2 cut(s)	313, 864
BbvI	GCAGC	3 cut(s)	771, 834, 995
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	836
BcnI	CCSGG	3 cut(s)	492, 877, 909
BcoDI	GTCTC	2 cut(s)	525, 992
BfaI	CTAG	4 cut(s)	59, 503, 593, 789
BisI	GCNGC	4 cut(s)	63, 785, 823, 984
BlsI	GCNGC	4 cut(s)	64, 786, 824, 985
Bme1390I	CCNGG	3 cut(s)	492, 877, 909
BmeRI	GACNNNNNGTC	1 cut(s)	871
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	846
BmiI	GGNNCC	3 cut(s)	91, 614, 733
BmrFI	CCNGG	3 cut(s)	492, 877, 909
BmrI	ACTGGG	1 cut(s)	169
BmtI	GCTAGC	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	445
BplI	GAGNNNNNCTC	4 cut(s)	580, 612, 919, 951
BpmI	CTGGAG	1 cut(s)	549
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	4 cut(s)	110, 734, 923, 987
BpuMI	CCSGG	3 cut(s)	492, 877, 909
BsaHI	GRCGYC	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	616, 852
BsaWI	WCCGGW	3 cut(s)	190, 583, 1012
BsaXI	ACNNNNNCTCC	2 cut(s)	951, 981
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	3 cut(s)	164, 532, 614
BseAI	TCCGGA	1 cut(s)	1012
BseDI	CCNNGG	2 cut(s)	616, 852
BseGI	GGATG	1 cut(s)	949
BseMII	CTCAG	3 cut(s)	28, 533, 833
BseNI	ACTGG	3 cut(s)	164, 532, 614
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	3 cut(s)	771, 834, 995
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	435, 847
BsiHKAI	GWGCWC	2 cut(s)	313, 864
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	7 cut(s)	191, 492, 584, 708, 876, 909, 1013
BsiWI	CGTACG	1 cut(s)	738
BslFI	GGGAC	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	525, 992
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	2 cut(s)	85, 907
BsnI	GGCC	2 cut(s)	435, 847
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	313, 864
Bsp13I	TCCGGA	1 cut(s)	1012
Bsp143I	GATC	3 cut(s)	136, 660, 774
Bsp68I	TCGCGA	1 cut(s)	71
BspACI	CCGC	6 cut(s)	63, 621, 792, 825, 849, 977
BspANI	GGCC	2 cut(s)	435, 847
BspCNI	CTCAG	3 cut(s)	27, 534, 834
BspEI	TCCGGA	1 cut(s)	1012
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	3 cut(s)	91, 614, 733
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	782
BsrFI	RCCGGY	1 cut(s)	707
BsrI	ACTGG	3 cut(s)	164, 532, 614
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	2 cut(s)	616, 852
BssMI	GATC	3 cut(s)	136, 660, 774
BssNI	GRCGYC	1 cut(s)	654
BssSI	CACGAG	2 cut(s)	33, 925
Bst2BI	CACGAG	2 cut(s)	33, 925
Bst4CI	ACNGT	3 cut(s)	511, 632, 692
BstACI	GRCGYC	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	1081
BstC8I	GCNNGC	5 cut(s)	210, 504, 849, 914, 981
BstDEI	CTNAG	4 cut(s)	14, 542, 561, 842
BstDSI	CCRYGG	1 cut(s)	852
BstF5I	GGATG	1 cut(s)	949
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	3 cut(s)	139, 663, 777
BstMAI	GTCTC	2 cut(s)	525, 992
BstMBI	GATC	3 cut(s)	136, 660, 774
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 819, 831, 913, 1072, 1081
BstNSI	RCATGY	1 cut(s)	983
BstSCI	CCNGG	3 cut(s)	490, 875, 907
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	771, 834, 995
BstV2I	GAAGAC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	435, 847
BtgI	CCRYGG	1 cut(s)	852
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	949
BtsIMutI	CAGTG	3 cut(s)	400, 525, 637
BtuMI	TCGCGA	1 cut(s)	71
Cac8I	GCNNGC	5 cut(s)	210, 504, 849, 914, 981
CfoI	GCGC	1 cut(s)	907
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	846
Csp6I	GTAC	3 cut(s)	229, 247, 739
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	2 cut(s)	374, 980
CviQI	GTAC	3 cut(s)	229, 247, 739
DdeI	CTNAG	4 cut(s)	14, 542, 561, 842
DpnI	GATC	3 cut(s)	138, 662, 776
DpnII	GATC	3 cut(s)	136, 660, 774
DriI	GACNNNNNGTC	1 cut(s)	871
Eam1105I	GACNNNNNGTC	1 cut(s)	871
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	2 cut(s)	377, 983
FaiI	YATR	9 cut(s)	120, 368, 375, 465, 519, 548, 972, 981, 1082
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	2 cut(s)	373, 979
FauI	CCCGC	1 cut(s)	856
FblI	GTMKAC	2 cut(s)	687, 896
Fnu4HI	GCNGC	4 cut(s)	63, 785, 823, 984
FokI	GGATG	1 cut(s)	956
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	4 cut(s)	63, 785, 823, 984
FspBI	CTAG	4 cut(s)	59, 503, 593, 789
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	4 cut(s)	63, 785, 823, 984
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	435, 847
HapII	CCGG	7 cut(s)	191, 492, 584, 708, 876, 909, 1013
HhaI	GCGC	1 cut(s)	907
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	2 cut(s)	377, 983
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HincII	GTYRAC	3 cut(s)	148, 688, 897
HindII	GTYRAC	3 cut(s)	148, 688, 897
HindIII	AAGCTT	2 cut(s)	206, 1104
HinfI	GANTC	8 cut(s)	95, 233, 390, 580, 589, 1000, 1016, 1054
HpaII	CCGG	7 cut(s)	191, 492, 584, 708, 876, 909, 1013
HphI	GGTGA	6 cut(s)	145, 146, 448, 598, 686, 1019
Hpy166II	GTNNAC	5 cut(s)	148, 249, 688, 862, 897
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	5 cut(s)	70, 127, 406, 658, 1013
Hpy8I	GTNNAC	5 cut(s)	148, 249, 688, 862, 897
Hpy99I	CGWCG	2 cut(s)	689, 901
HpyAV	CCTTC	5 cut(s)	124, 425, 453, 943, 1050
HpyCH4III	ACNGT	3 cut(s)	511, 632, 692
HpyCH4IV	ACGT	2 cut(s)	320, 654
HpyCH4V	TGCA	4 cut(s)	167, 862, 916, 983
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 819, 831, 913, 1072, 1081
HpyF3I	CTNAG	4 cut(s)	14, 542, 561, 842
HpySE526I	ACGT	2 cut(s)	320, 654
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	377, 983
HspAI	GCGC	1 cut(s)	905
Kpn2I	TCCGGA	1 cut(s)	1012
Kzo9I	GATC	3 cut(s)	136, 660, 774
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	3 cut(s)	771, 834, 995
MaeI	CTAG	4 cut(s)	59, 503, 593, 789
MaeII	ACGT	2 cut(s)	320, 654
MaeIII	GTNAC	6 cut(s)	623, 655, 692, 794, 929, 1051
MalI	GATC	3 cut(s)	138, 662, 776
MboI	GATC	3 cut(s)	136, 660, 774
MboII	GAAGA	1 cut(s)	445
MfeI	CAATTG	1 cut(s)	1047
MhlI	GDGCHC	2 cut(s)	313, 864
MluCI	AATT	5 cut(s)	300, 314, 1033, 1047, 1098
MlyI	GAGTC	4 cut(s)	574, 598, 994, 1048
MmeI	TCCRAC	2 cut(s)	51, 262
MroI	TCCGGA	1 cut(s)	1012
MseI	TTAA	4 cut(s)	323, 1089, 1101, 1108
MslI	CAYNNNNRTG	3 cut(s)	551, 630, 1049
MspA1I	CMGCKG	1 cut(s)	825
MspI	CCGG	7 cut(s)	191, 492, 584, 708, 876, 909, 1013
MspR9I	CCNGG	3 cut(s)	492, 877, 909
MunI	CAATTG	1 cut(s)	1047
Mva1269I	GAATGC	2 cut(s)	85, 907
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	6 cut(s)	68, 819, 831, 913, 1072, 1081
NciI	CCSGG	3 cut(s)	492, 877, 909
NdeII	GATC	3 cut(s)	136, 660, 774
NheI	GCTAGC	1 cut(s)	502
NlaIII	CATG	2 cut(s)	377, 983
NlaIV	GGNNCC	3 cut(s)	91, 614, 733
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	4 cut(s)	623, 655, 692, 1051
NruI	TCGCGA	1 cut(s)	71
NspI	RCATGY	1 cut(s)	983
OliI	CACNNNNGTG	2 cut(s)	630, 1049
PaeI	GCATGC	1 cut(s)	983
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PctI	GAATGC	2 cut(s)	85, 907
PfeI	GAWTC	4 cut(s)	95, 233, 390, 1016
Pfl23II	CGTACG	1 cut(s)	738
PfoI	TCCNGGA	1 cut(s)	875
PkrI	GCNGC	4 cut(s)	64, 786, 824, 985
PleI	GAGTC	4 cut(s)	574, 597, 994, 1048
PpsI	GAGTC	4 cut(s)	574, 597, 994, 1048
Psp124BI	GAGCTC	1 cut(s)	313
PspLI	CGTACG	1 cut(s)	738
PspN4I	GGNNCC	3 cut(s)	91, 614, 733
PspPI	GGNCC	1 cut(s)	846
RruI	TCGCGA	1 cut(s)	71
RsaI	GTAC	3 cut(s)	230, 248, 740
RsaNI	GTAC	3 cut(s)	229, 247, 739
RseI	CAYNNNNRTG	3 cut(s)	551, 630, 1049
SacI	GAGCTC	1 cut(s)	313
SalI	GTCGAC	2 cut(s)	686, 895
SaqAI	TTAA	4 cut(s)	323, 1089, 1101, 1108
SatI	GCNGC	4 cut(s)	63, 785, 823, 984
Sau3AI	GATC	3 cut(s)	136, 660, 774
Sau96I	GGNCC	1 cut(s)	846
SchI	GAGTC	4 cut(s)	574, 598, 994, 1048
ScrFI	CCNGG	3 cut(s)	492, 877, 909
SduI	GDGCHC	2 cut(s)	313, 864
SmiMI	CAYNNNNRTG	3 cut(s)	551, 630, 1049
SmlI	CTYRAG	4 cut(s)	125, 749, 938, 1002
SmoI	CTYRAG	4 cut(s)	125, 749, 938, 1002
SphI	GCATGC	1 cut(s)	983
Sse9I	AATT	5 cut(s)	300, 314, 1033, 1047, 1098
SsiI	CCGC	6 cut(s)	63, 621, 792, 825, 849, 977
SspMI	CTAG	4 cut(s)	59, 503, 593, 789
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	3 cut(s)	490, 875, 907
TaaI	ACNGT	3 cut(s)	511, 632, 692
TaiI	ACGT	2 cut(s)	323, 657
TaqI	TCGA	3 cut(s)	687, 816, 896
TasI	AATT	5 cut(s)	300, 314, 1033, 1047, 1098
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	4 cut(s)	95, 233, 390, 1016
Tru1I	TTAA	4 cut(s)	323, 1089, 1101, 1108
Tru9I	TTAA	4 cut(s)	323, 1089, 1101, 1108
TscAI	CASTG	3 cut(s)	400, 532, 637
TseFI	GTSAC	4 cut(s)	623, 655, 692, 1051
TseI	GCWGC	3 cut(s)	784, 822, 983
Tsp45I	GTSAC	4 cut(s)	623, 655, 692, 1051
TspDTI	ATGAA	5 cut(s)	17, 40, 362, 569, 987
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	400, 532, 637
VneI	GTGCAC	1 cut(s)	860
XceI	RCATGY	1 cut(s)	983
XmiI	GTMKAC	2 cut(s)	687, 896
XspI	CTAG	4 cut(s)	59, 503, 593, 789
ZraI	GACGTC	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.