Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004802

Physical Location & Seq

Genomic Coordinates Reverse (-)

36855240 .. 36857569

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGCAACATTTCTGTGCTGCTTTGTTTGGTCATCACCATCCTAGTAGCTTCTGGGTTTGCTAATGGTTCTGGTTATGAACCAAAGGAGAAGATTGGTGTTTATGAGCTCAAGAAGGGTGATTTGTCTGTCAAATTCACCAATTGGGGTGCAACTATCATCTCCCTAATCCTGCCTGACAAAAATGGAAAGCTGGCTGATGTTGTTCTAGGCTATGATTCAGTGAATGAATACAAGAATGATACTTCATACATTGGTGCTATTGTTGGACGCGTTGCTAACAGAATCGGTGGCGCTCAATTTACTTTGAATGGAACTCATTACAAGCTAGTTGCTAATGAAGGGAAAAACATACTTCATGGTGGGCTTAGAGGATTCAGTGATGTTGTTTGGAAAGTGAAGAAGTATAAGAATGGAGGTCATACTCCTTCCATTGCCTTCACTTATCATAGCGCTGATGGGGAACAAGGGTTTCCTGGAGATGTTATTGTCACCGTCACCTACACACTCCTTGGAGACAAACAATTGAGCATCAAAATGAAAGCTAAGGCGCTAAACAAGCCAACTCCGGTGAATCTAGCTCAGCACACTTACTGGAACCTTGGCGGCCACAACAGTGGTAACATTCTCTCCCAACACGTCCAGATCTTTGGATCCAAAATCACTCTGGTAGATAAAGGTCTCATCCCCACCGGAAAATTTGCATCCGTGAAAGGCACACCTTATGATTTCCTCAAGCCTCAAGTTGTTGGAAGCAGGATTGACAAGCTTAAGGCAACCAAAGGTTATGACGTCAACTATGTGCTTGATGGCCCAGCTGGCAACAAGTTGAAGCGCGCTGCTGTGGTGCATGATAGCAAGTCAGGAAGGATGTTGGAGCTCTCAACAAATGCTCCCGGTATGCAGTTCTATACAAGCAACTATCTCCAGGATGTGAAGGGGAAAGGCGGGTGTGTATACCAACCACGTGCAGCATTATGCTTGGAAACTCAGGGATTTCCGGATGCTGTGAACCACCCTAATTTCCCTTCAACAATTGTGACTCCAACAAAGTCCTACAAGCATTATATGCTGTTCAAGTTTTCGACTACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

366

Amino Acids

39.54

Weight (kDa)

9.54

Isoelectric Point (pI)

19.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	34 - 359	2.1e-93	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47800
fragaria_vesca	FvH4_5g15261 FvH4_6g49081
malus_domestica	MD14G1196700.v1.1 MD17G1048800.v1.1
prunus_persica	Prupe.3G270200_v2.0.a1 Prupe.5G188800_v2.0.a1 Prupe.5G188800_v2.0.a1
pyrus_communis	pycom14g16350 pycom17g04380
rosa_chinensis	RchiOBHm_Chr2g0168911 RchiOBHm_Chr7g0180821
rosa_laevigata	RLG00000005227 RLG00000021813
rosa_multiflora	Rmu_sc0007457.1_g000006 Rmu_ssc0000393.1_g000013
rosa_roxburghii	Rroxscaffold_2G00082600 Rroxscaffold_3G00272500
rosa_rugosa	Rorug02G0536000 Rorug06G0436400.1 Rorug06G0436500.1 Rorug06G0436600
rosa_samantha	Rh2AG607000 Rh2BG619800 Rh2CG588400 Rh2DG630500 Rh7BG037900 Rh7CG039400 Rh7DG037900
rosa_wichuraiana	Rw2G050330 Rw7G003140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	957
AccII	CGCG	2 cut(s)	273, 837
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	2 cut(s)	606, 948
AclWI	GGATC	2 cut(s)	648, 661
AcoI	YGGCCR	1 cut(s)	607
AcsI	RAATTY	2 cut(s)	134, 698
AcvI	CACGTG	1 cut(s)	968
AcyI	GRCGYC	1 cut(s)	792
AfeI	AGCGCT	1 cut(s)	454
AflII	CTTAAG	1 cut(s)	770
AflIII	ACRYGT	2 cut(s)	271, 637
AgsI	TTSAA	4 cut(s)	310, 832, 1032, 1078
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	475, 927
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	9 cut(s)	50, 109, 193, 328, 545, 581, 769, 818, 880
AluI	AGCT	9 cut(s)	50, 109, 193, 328, 545, 581, 769, 818, 880
Alw21I	GWGCWC	2 cut(s)	111, 882
Alw26I	GTCTC	2 cut(s)	510, 686
AlwI	GGATC	2 cut(s)	648, 661
Aor13HI	TCCGGA	1 cut(s)	1000
Aor51HI	AGCGCT	1 cut(s)	454
AoxI	GGCC	2 cut(s)	607, 811
ApeKI	GCWGC	3 cut(s)	19, 839, 971
ApoI	RAATTY	2 cut(s)	134, 698
AspLEI	GCGC	5 cut(s)	296, 455, 553, 837, 839
AspS9I	GGNCC	1 cut(s)	812
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	6 cut(s)	28, 130, 131, 484, 490, 583
BamHI	GGATCC	1 cut(s)	653
BanII	GRGCYC	2 cut(s)	111, 882
BbrPI	CACGTG	1 cut(s)	968
Bbv12I	GWGCWC	2 cut(s)	111, 882
BbvI	GCAGC	3 cut(s)	6, 826, 983
BccI	CCATC	3 cut(s)	47, 452, 803
BciT130I	CCWGG	2 cut(s)	477, 929
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	510, 686
BfaI	CTAG	4 cut(s)	44, 209, 329, 578
BfoI	RGCGCY	3 cut(s)	297, 456, 554
BfrI	CTTAAG	1 cut(s)	770
BglI	GCCNNNNNGGC	1 cut(s)	819
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	4 cut(s)	20, 607, 840, 972
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	4 cut(s)	21, 608, 841, 973
Bme1390I	CCNGG	3 cut(s)	477, 897, 929
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	2 cut(s)	599, 655
BmrFI	CCNGG	3 cut(s)	477, 897, 929
BmsI	GCATC	3 cut(s)	540, 713, 994
BpmI	CTGGAG	2 cut(s)	498, 911
Bpu10I	CCTNAGC	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	3 cut(s)	95, 719, 726
BpuMI	CCSGG	1 cut(s)	897
BsaAI	YACGTR	1 cut(s)	968
BsaHI	GRCGYC	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	511, 601
BsaWI	WCCGGW	3 cut(s)	568, 692, 1000
BsaXI	ACNNNNNCTCC	4 cut(s)	614, 644, 877, 907
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	1000
BseBI	CCWGG	2 cut(s)	477, 929
BseDI	CCNNGG	2 cut(s)	511, 601
BseGI	GGATG	6 cut(s)	39, 684, 704, 876, 937, 1009
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	2 cut(s)	596, 1004
BseNI	ACTGG	1 cut(s)	599
BsePI	GCGCGC	1 cut(s)	835
BseXI	GCAGC	3 cut(s)	6, 826, 983
BseYI	CCCAGC	1 cut(s)	814
BsgI	GTGCAG	1 cut(s)	990
Bsh1236I	CGCG	2 cut(s)	273, 837
BshFI	GGCC	2 cut(s)	609, 813
BsiHKAI	GWGCWC	2 cut(s)	111, 882
BsiSI	CCGG	4 cut(s)	569, 693, 897, 1001
BsmAI	GTCTC	2 cut(s)	510, 686
BsnI	GGCC	2 cut(s)	609, 813
Bso31I	GGTCTC	1 cut(s)	686
Bsp1286I	GDGCHC	2 cut(s)	111, 882
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp143I	GATC	2 cut(s)	645, 653
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	2 cut(s)	606, 948
BspANI	GGCC	2 cut(s)	609, 813
BspCNI	CTCAG	2 cut(s)	595, 1003
BspEI	TCCGGA	1 cut(s)	1000
BspFNI	CGCG	2 cut(s)	273, 837
BspLI	GGNNCC	2 cut(s)	599, 655
BspPI	GGATC	2 cut(s)	648, 661
BspTI	CTTAAG	1 cut(s)	770
BspTNI	GGTCTC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	511, 601
BssHII	GCGCGC	1 cut(s)	835
BssMI	GATC	2 cut(s)	645, 653
BssNAI	GTATAC	1 cut(s)	958
BssNI	GRCGYC	1 cut(s)	792
BssT1I	CCWWGG	2 cut(s)	511, 601
Bst1107I	GTATAC	1 cut(s)	958
Bst2UI	CCWGG	2 cut(s)	477, 929
Bst4CI	ACNGT	2 cut(s)	496, 617
BstACI	GRCGYC	1 cut(s)	792
BstAFI	CTTAAG	1 cut(s)	770
BstAPI	GCANNNNNTGC	1 cut(s)	1069
BstBAI	YACGTR	1 cut(s)	968
BstC8I	GCNNGC	3 cut(s)	195, 820, 837
BstDEI	CTNAG	4 cut(s)	368, 546, 582, 990
BstF5I	GGATG	6 cut(s)	39, 684, 704, 876, 937, 1009
BstFNI	CGCG	2 cut(s)	273, 837
BstH2I	RGCGCY	3 cut(s)	297, 456, 554
BstHHI	GCGC	5 cut(s)	296, 455, 553, 837, 839
BstKTI	GATC	2 cut(s)	648, 656
BstMAI	GTCTC	2 cut(s)	510, 686
BstMBI	GATC	2 cut(s)	645, 653
BstMWI	GCNNNNNNNGC	3 cut(s)	559, 819, 1069
BstNI	CCWGG	2 cut(s)	477, 929
BstSCI	CCNGG	3 cut(s)	475, 895, 927
BstUI	CGCG	2 cut(s)	273, 837
BstV1I	GCAGC	3 cut(s)	6, 826, 983
BstX2I	RGATCY	2 cut(s)	645, 653
BstXI	CCANNNNNNTGG	2 cut(s)	617, 650
BstYI	RGATCY	2 cut(s)	645, 653
BstZ17I	GTATAC	1 cut(s)	958
BsuRI	GGCC	2 cut(s)	609, 813
BtrI	CACGTC	1 cut(s)	640
BtsCI	GGATG	6 cut(s)	39, 684, 704, 876, 937, 1009
BtsIMutI	CAGTG	3 cut(s)	228, 385, 622
Cac8I	GCNNGC	3 cut(s)	195, 820, 837
CfoI	GCGC	5 cut(s)	296, 455, 553, 837, 839
Cfr13I	GGNCC	1 cut(s)	812
CseI	GACGC	1 cut(s)	279
CviAII	CATG	2 cut(s)	359, 851
DdeI	CTNAG	4 cut(s)	368, 546, 582, 990
DpnI	GATC	2 cut(s)	647, 655
DpnII	GATC	2 cut(s)	645, 653
EaeI	YGGCCR	1 cut(s)	607
Ecl136II	GAGCTC	2 cut(s)	109, 880
Eco130I	CCWWGG	2 cut(s)	511, 601
Eco24I	GRGCYC	2 cut(s)	111, 882
Eco31I	GGTCTC	1 cut(s)	686
Eco47III	AGCGCT	1 cut(s)	454
Eco53kI	GAGCTC	2 cut(s)	109, 880
Eco72I	CACGTG	1 cut(s)	968
EcoICRI	GAGCTC	2 cut(s)	109, 880
EcoRII	CCWGG	2 cut(s)	475, 927
EcoT14I	CCWWGG	2 cut(s)	511, 601
EcoT38I	GRGCYC	2 cut(s)	111, 882
ErhI	CCWWGG	2 cut(s)	511, 601
FaeI	CATG	2 cut(s)	362, 854
FatI	CATG	2 cut(s)	358, 850
FauI	CCCGC	1 cut(s)	941
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	4 cut(s)	20, 607, 840, 972
FokI	GGATG	6 cut(s)	26, 671, 691, 883, 944, 1016
FriOI	GRGCYC	2 cut(s)	111, 882
Fsp4HI	GCNGC	4 cut(s)	20, 607, 840, 972
FspBI	CTAG	4 cut(s)	44, 209, 329, 578
GlaI	GCGC	5 cut(s)	295, 454, 552, 836, 838
GluI	GCNGC	4 cut(s)	20, 607, 840, 972
GsaI	CCCAGC	1 cut(s)	818
GsuI	CTGGAG	2 cut(s)	498, 911
HaeII	RGCGCY	3 cut(s)	297, 456, 554
HaeIII	GGCC	2 cut(s)	609, 813
HapII	CCGG	4 cut(s)	569, 693, 897, 1001
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	5 cut(s)	296, 455, 553, 837, 839
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	2 cut(s)	362, 854
Hin6I	GCGC	5 cut(s)	294, 453, 551, 835, 837
HinP1I	GCGC	5 cut(s)	294, 453, 551, 835, 837
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	5 cut(s)	218, 285, 375, 574, 1042
HpaII	CCGG	4 cut(s)	569, 693, 897, 1001
HphI	GGTGA	6 cut(s)	28, 130, 131, 484, 490, 583
Hpy166II	GTNNAC	3 cut(s)	796, 958, 1012
Hpy188III	TCNNGA	4 cut(s)	112, 643, 864, 1001
Hpy8I	GTNNAC	3 cut(s)	796, 958, 1012
HpyAV	CCTTC	7 cut(s)	109, 335, 438, 448, 861, 931, 1038
HpyCH4III	ACNGT	2 cut(s)	496, 617
HpyCH4IV	ACGT	3 cut(s)	639, 792, 967
HpyCH4V	TGCA	5 cut(s)	152, 704, 850, 904, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	559, 819, 1069
HpyF3I	CTNAG	4 cut(s)	368, 546, 582, 990
HpySE526I	ACGT	3 cut(s)	639, 792, 967
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	2 cut(s)	362, 854
HspAI	GCGC	5 cut(s)	294, 453, 551, 835, 837
Kpn2I	TCCGGA	1 cut(s)	1000
Kzo9I	GATC	2 cut(s)	645, 653
LmnI	GCTCC	2 cut(s)	877, 898
Lsp1109I	GCAGC	3 cut(s)	6, 826, 983
LweI	GCATC	3 cut(s)	540, 713, 994
MaeI	CTAG	4 cut(s)	44, 209, 329, 578
MaeII	ACGT	3 cut(s)	639, 792, 967
MaeIII	GTNAC	4 cut(s)	490, 496, 620, 1039
MalI	GATC	2 cut(s)	647, 655
MboI	GATC	2 cut(s)	645, 653
MboII	GAAGA	2 cut(s)	103, 412
MfeI	CAATTG	3 cut(s)	142, 524, 1035
MflI	RGATCY	2 cut(s)	645, 653
MhlI	GDGCHC	2 cut(s)	111, 882
MluCI	AATT	7 cut(s)	134, 142, 299, 524, 698, 1021, 1035
MluI	ACGCGT	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	4 cut(s)	247, 730, 855, 1070
MnlI	CCTC	4 cut(s)	365, 410, 743, 750
MroI	TCCGGA	1 cut(s)	1000
MseI	TTAA	2 cut(s)	771, 1096
MslI	CAYNNNNRTG	3 cut(s)	14, 536, 615
MspA1I	CMGCKG	1 cut(s)	818
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	4 cut(s)	569, 693, 897, 1001
MspR9I	CCNGG	3 cut(s)	477, 897, 929
MunI	CAATTG	3 cut(s)	142, 524, 1035
MvaI	CCWGG	2 cut(s)	477, 929
MvnI	CGCG	2 cut(s)	273, 837
MwoI	GCNNNNNNNGC	3 cut(s)	559, 819, 1069
NciI	CCSGG	1 cut(s)	897
NdeII	GATC	2 cut(s)	645, 653
NlaIII	CATG	2 cut(s)	362, 854
NlaIV	GGNNCC	2 cut(s)	599, 655
NmuCI	GTSAC	3 cut(s)	490, 496, 1039
OliI	CACNNNNGTG	1 cut(s)	615
PauI	GCGCGC	1 cut(s)	835
PfeI	GAWTC	4 cut(s)	218, 285, 375, 574
PfoI	TCCNGGA	2 cut(s)	475, 927
PkrI	GCNGC	4 cut(s)	21, 608, 841, 973
PleI	GAGTC	1 cut(s)	1036
PmaCI	CACGTG	1 cut(s)	968
PmlI	CACGTG	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	1036
Ppu21I	YACGTR	1 cut(s)	968
Psp124BI	GAGCTC	2 cut(s)	111, 882
Psp6I	CCWGG	2 cut(s)	475, 927
PspCI	CACGTG	1 cut(s)	968
PspFI	CCCAGC	1 cut(s)	814
PspGI	CCWGG	2 cut(s)	475, 927
PspN4I	GGNNCC	2 cut(s)	599, 655
PspPI	GGNCC	1 cut(s)	812
PsuI	RGATCY	2 cut(s)	645, 653
PteI	GCGCGC	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	818
RseI	CAYNNNNRTG	3 cut(s)	14, 536, 615
SacI	GAGCTC	2 cut(s)	111, 882
SaqAI	TTAA	2 cut(s)	771, 1096
SatI	GCNGC	4 cut(s)	20, 607, 840, 972
Sau3AI	GATC	2 cut(s)	645, 653
Sau96I	GGNCC	1 cut(s)	812
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	3 cut(s)	477, 897, 929
SduI	GDGCHC	2 cut(s)	111, 882
SfaNI	GCATC	3 cut(s)	540, 713, 994
SmiMI	CAYNNNNRTG	3 cut(s)	14, 536, 615
SmlI	CTYRAG	4 cut(s)	110, 734, 741, 770
SmoI	CTYRAG	4 cut(s)	110, 734, 741, 770
Sse9I	AATT	7 cut(s)	134, 142, 299, 524, 698, 1021, 1035
SsiI	CCGC	2 cut(s)	606, 948
SspMI	CTAG	4 cut(s)	44, 209, 329, 578
SstI	GAGCTC	2 cut(s)	111, 882
StyD4I	CCNGG	3 cut(s)	475, 895, 927
StyI	CCWWGG	2 cut(s)	511, 601
TaaI	ACNGT	2 cut(s)	496, 617
TaiI	ACGT	3 cut(s)	642, 795, 970
TaqI	TCGA	1 cut(s)	1085
TasI	AATT	7 cut(s)	134, 142, 299, 524, 698, 1021, 1035
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	4 cut(s)	218, 285, 375, 574
Tru1I	TTAA	2 cut(s)	771, 1096
Tru9I	TTAA	2 cut(s)	771, 1096
TscAI	CASTG	3 cut(s)	228, 385, 622
TseFI	GTSAC	3 cut(s)	490, 496, 1039
TseI	GCWGC	3 cut(s)	19, 839, 971
Tsp45I	GTSAC	3 cut(s)	490, 496, 1039
TspDTI	ATGAA	6 cut(s)	93, 237, 243, 347, 354, 554
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	3 cut(s)	228, 385, 622
Vha464I	CTTAAG	1 cut(s)	770
XapI	RAATTY	2 cut(s)	134, 698
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	4 cut(s)	44, 209, 329, 578
ZraI	GACGTC	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.