Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004802

Physical Location & Seq

Genomic Coordinates Forward (+)

5387727 .. 5390181

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCAATATTTCTATGCTCCTTTGTTTGTTCATTACAATCCTAGTAGCTTCTGGGTTTGCTAATGGTTCTGGTTATGAACCAAAGGAGAAGGTTGGTGTTTATGAGCTCAGGAAGGGTGATTTGTCTGTCAAATTCACCAATTGGGGAGCAACTATCATCTCCCTAATCCTGCCTGACAAACATGGAAAGCTGGCTGATGTTGTTCTTGGGTATGATTCAGTGAATGAGTACAAGAATGATACTTCATACATCGGTGCTATTGTCGGACGCGTTGCTAACAGAATCGGTGGCGCTCAATTTACTTTGAATGGAACTCATTACAAGCTAGTTGCTAATGAAGGAAAAAACATGCTTCATGGTGGGCTTAGAGGATTTAGTGATGTTGTTTGGAAAGTGAAGAAGTATAAGAATGAAGGTCATGCTCCTTCCATTGTCTTCACTTATCATAGTGCTGATGGGGAACAAGGGTTTCCTGGAGATGTTATTGTCACTGTCAGCTACACACTCCTTGGAGACAAACAATTGATTGTGAAAATGAAAGCTAAGGCCCTAAACAAGCCAACTCCAGTGAATCTAGCTCAGCACACTTACTGGAACCTTGGCGGCCACAATAGCGGTGACATTCTCTCCCAATACATCCAGATCTTTGGATCCAAAATCACTCTGGTAGATAGCAGTCTCATCCCCACCGGAAAATTTGCATCCGTGAAAGGCACACCCTATGATTTCCTCAAGCCTCAAGCAGTTGGAAGCAGGATCAACAAACTTACGGCAACCAAAGGTTATGACGTCAACTACGTGCTTGATGGCCCAGCTGGCAACAAGTTGAAGCGCGCCGCGGTGGTGCATGACAGCAAGTCAGGAAGGATGATGGAGCTCTCAACAAATGTTCCCGGTATGCAATTCTACACAAGCAACTATCTCAAGGATGTGAAGGGGAAAGGCGGGTTTGTATACCAAACACATGCAGCATTGTGTTTGGAAACTCAGGGATTTCCGGATGCTGTGAACCACCCTAATTTCCCTTCAACAATTGTGACTCCAACGAAGTCCTATAGGCATTATATGCTGTTCAAGTTTTCGACTACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

365

Amino Acids

39.82

Weight (kDa)

9.46

Isoelectric Point (pI)

19.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	34 - 359	6.5e-93	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47800
fragaria_vesca	FvH4_5g15261 FvH4_6g49081
malus_domestica	MD14G1196700.v1.1 MD17G1048800.v1.1
prunus_persica	Prupe.3G270200_v2.0.a1 Prupe.5G188800_v2.0.a1 Prupe.5G188800_v2.0.a1
pyrus_communis	pycom14g16350 pycom17g04380
rosa_chinensis	RchiOBHm_Chr2g0168911 RchiOBHm_Chr7g0180821
rosa_laevigata	RLG00000005227 RLG00000021813
rosa_multiflora	Rmu_sc0007457.1_g000006 Rmu_ssc0000393.1_g000013
rosa_roxburghii	Rroxscaffold_2G00082600 Rroxscaffold_3G00272500
rosa_rugosa	Rorug02G0536000 Rorug06G0436400.1 Rorug06G0436500.1 Rorug06G0436600
rosa_samantha	Rh2AG607000 Rh2BG619800 Rh2CG588400 Rh2DG630500 Rh7BG037900 Rh7CG039400 Rh7DG037900
rosa_wichuraiana	Rw2G050330 Rw7G003140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	957
AccII	CGCG	3 cut(s)	273, 837, 842
AccIII	TCCGGA	1 cut(s)	1000
AciI	CCGC	5 cut(s)	606, 618, 840, 842, 948
AclWI	GGATC	3 cut(s)	648, 661, 767
AcoI	YGGCCR	2 cut(s)	3, 607
AcsI	RAATTY	2 cut(s)	134, 698
AcyI	GRCGYC	1 cut(s)	792
AfaI	GTAC	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	4 cut(s)	310, 832, 1032, 1078
AhdI	GACNNNNNGTC	1 cut(s)	859
AjnI	CCWGG	1 cut(s)	475
Alw21I	GWGCWC	2 cut(s)	111, 882
Alw26I	GTCTC	2 cut(s)	510, 686
AlwI	GGATC	3 cut(s)	648, 661, 767
Aor13HI	TCCGGA	1 cut(s)	1000
AoxI	GGCC	4 cut(s)	3, 549, 607, 811
ApeKI	GCWGC	1 cut(s)	971
ApoI	RAATTY	2 cut(s)	134, 698
AspLEI	GCGC	3 cut(s)	296, 837, 839
AspS9I	GGNCC	2 cut(s)	550, 812
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	3 cut(s)	130, 131, 632
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	653
BanII	GRGCYC	2 cut(s)	111, 882
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	111, 882
BbvI	GCAGC	1 cut(s)	983
BccI	CCATC	3 cut(s)	452, 803, 868
BceAI	ACGGC	1 cut(s)	789
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	510, 686
BfaI	CTAG	3 cut(s)	44, 329, 578
BfmI	CTRYAG	2 cut(s)	1057, 1089
BfoI	RGCGCY	1 cut(s)	297
BglI	GCCNNNNNGGC	1 cut(s)	819
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	3 cut(s)	607, 840, 972
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	3 cut(s)	608, 841, 973
Bme1390I	CCNGG	2 cut(s)	477, 897
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmgT120I	GGNCC	2 cut(s)	550, 812
BmiI	GGNNCC	2 cut(s)	599, 655
BmrFI	CCNGG	2 cut(s)	477, 897
BmsI	GCATC	2 cut(s)	713, 994
BpiI	GAAGAC	1 cut(s)	430
BpmI	CTGGAG	2 cut(s)	498, 552
Bpu10I	CCTNAGC	2 cut(s)	110, 546
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	3 cut(s)	719, 726, 911
BpuMI	CCSGG	1 cut(s)	897
BsaAI	YACGTR	1 cut(s)	802
BsaHI	GRCGYC	1 cut(s)	792
BsaJI	CCNNGG	3 cut(s)	511, 601, 840
BsaWI	WCCGGW	2 cut(s)	692, 1000
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bse1I	ACTGG	2 cut(s)	569, 599
BseAI	TCCGGA	1 cut(s)	1000
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	511, 601, 840
BseGI	GGATG	6 cut(s)	639, 684, 704, 876, 937, 1009
BseMII	CTCAG	3 cut(s)	124, 596, 1004
BseNI	ACTGG	2 cut(s)	569, 599
BsePI	GCGCGC	1 cut(s)	835
BseXI	GCAGC	1 cut(s)	983
BseYI	CCCAGC	1 cut(s)	814
Bsh1236I	CGCG	3 cut(s)	273, 837, 842
BshFI	GGCC	4 cut(s)	5, 551, 609, 813
BsiHKAI	GWGCWC	2 cut(s)	111, 882
BsiSI	CCGG	3 cut(s)	693, 897, 1001
BsmAI	GTCTC	2 cut(s)	510, 686
BsnI	GGCC	4 cut(s)	5, 551, 609, 813
Bsp1286I	GDGCHC	2 cut(s)	111, 882
Bsp13I	TCCGGA	1 cut(s)	1000
Bsp143I	GATC	3 cut(s)	645, 653, 759
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	5 cut(s)	606, 618, 840, 842, 948
BspANI	GGCC	4 cut(s)	5, 551, 609, 813
BspCNI	CTCAG	3 cut(s)	123, 595, 1003
BspEI	TCCGGA	1 cut(s)	1000
BspFNI	CGCG	3 cut(s)	273, 837, 842
BspLI	GGNNCC	2 cut(s)	599, 655
BspPI	GGATC	3 cut(s)	648, 661, 767
BsrI	ACTGG	2 cut(s)	569, 599
BssECI	CCNNGG	3 cut(s)	511, 601, 840
BssHII	GCGCGC	1 cut(s)	835
BssMI	GATC	3 cut(s)	645, 653, 759
BssNAI	GTATAC	1 cut(s)	958
BssNI	GRCGYC	1 cut(s)	792
BssT1I	CCWWGG	2 cut(s)	511, 601
Bst1107I	GTATAC	1 cut(s)	958
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	792
BstAPI	GCANNNNNTGC	1 cut(s)	1069
BstBAI	YACGTR	1 cut(s)	802
BstC8I	GCNNGC	3 cut(s)	195, 820, 837
BstDEI	CTNAG	5 cut(s)	110, 368, 546, 582, 990
BstDSI	CCRYGG	1 cut(s)	840
BstF5I	GGATG	6 cut(s)	639, 684, 704, 876, 937, 1009
BstFNI	CGCG	3 cut(s)	273, 837, 842
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	3 cut(s)	296, 837, 839
BstKTI	GATC	3 cut(s)	648, 656, 762
BstMAI	GTCTC	2 cut(s)	510, 686
BstMBI	GATC	3 cut(s)	645, 653, 759
BstMWI	GCNNNNNNNGC	3 cut(s)	615, 819, 1069
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	2 cut(s)	355, 971
BstSCI	CCNGG	2 cut(s)	475, 895
BstSFI	CTRYAG	2 cut(s)	1057, 1089
BstUI	CGCG	3 cut(s)	273, 837, 842
BstV1I	GCAGC	1 cut(s)	983
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	2 cut(s)	645, 653
BstXI	CCANNNNNNTGG	1 cut(s)	650
BstYI	RGATCY	2 cut(s)	645, 653
BstZ17I	GTATAC	1 cut(s)	958
BsuRI	GGCC	4 cut(s)	5, 551, 609, 813
BtgI	CCRYGG	1 cut(s)	840
BtsCI	GGATG	6 cut(s)	639, 684, 704, 876, 937, 1009
BtsIMutI	CAGTG	3 cut(s)	228, 492, 576
Cac8I	GCNNGC	3 cut(s)	195, 820, 837
CfoI	GCGC	3 cut(s)	296, 837, 839
Cfr13I	GGNCC	2 cut(s)	550, 812
Cfr42I	CCGCGG	1 cut(s)	843
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	6 cut(s)	185, 352, 359, 422, 851, 968
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	5 cut(s)	110, 368, 546, 582, 990
DpnI	GATC	3 cut(s)	647, 655, 761
DpnII	GATC	3 cut(s)	645, 653, 759
DriI	GACNNNNNGTC	1 cut(s)	859
EaeI	YGGCCR	2 cut(s)	3, 607
Eam1105I	GACNNNNNGTC	1 cut(s)	859
Ecl136II	GAGCTC	2 cut(s)	109, 880
Eco130I	CCWWGG	2 cut(s)	511, 601
Eco24I	GRGCYC	2 cut(s)	111, 882
Eco53kI	GAGCTC	2 cut(s)	109, 880
EcoICRI	GAGCTC	2 cut(s)	109, 880
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	2 cut(s)	511, 601
EcoT38I	GRGCYC	2 cut(s)	111, 882
ErhI	CCWWGG	2 cut(s)	511, 601
FaeI	CATG	6 cut(s)	188, 355, 362, 425, 854, 971
FatI	CATG	6 cut(s)	184, 351, 358, 421, 850, 967
FauI	CCCGC	1 cut(s)	941
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	3 cut(s)	607, 840, 972
FokI	GGATG	6 cut(s)	626, 671, 691, 883, 944, 1016
FriOI	GRGCYC	2 cut(s)	111, 882
Fsp4HI	GCNGC	3 cut(s)	607, 840, 972
FspBI	CTAG	3 cut(s)	44, 329, 578
GlaI	GCGC	3 cut(s)	295, 836, 838
GluI	GCNGC	3 cut(s)	607, 840, 972
GsaI	CCCAGC	1 cut(s)	818
GsuI	CTGGAG	2 cut(s)	498, 552
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	5, 551, 609, 813
HapII	CCGG	3 cut(s)	693, 897, 1001
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	3 cut(s)	296, 837, 839
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	6 cut(s)	188, 355, 362, 425, 854, 971
Hin6I	GCGC	3 cut(s)	294, 835, 837
HinP1I	GCGC	3 cut(s)	294, 835, 837
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HinfI	GANTC	4 cut(s)	218, 285, 574, 1042
HpaII	CCGG	3 cut(s)	693, 897, 1001
HphI	GGTGA	3 cut(s)	130, 131, 632
Hpy166II	GTNNAC	3 cut(s)	796, 958, 1012
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	4 cut(s)	112, 643, 864, 1001
Hpy8I	GTNNAC	3 cut(s)	796, 958, 1012
HpyAV	CCTTC	8 cut(s)	85, 109, 335, 410, 438, 861, 931, 1038
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	2 cut(s)	792, 801
HpyCH4V	TGCA	4 cut(s)	704, 850, 904, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	615, 819, 1069
HpyF3I	CTNAG	5 cut(s)	110, 368, 546, 582, 990
HpySE526I	ACGT	2 cut(s)	792, 801
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	6 cut(s)	188, 355, 362, 425, 854, 971
HspAI	GCGC	3 cut(s)	294, 835, 837
Kpn2I	TCCGGA	1 cut(s)	1000
KspI	CCGCGG	1 cut(s)	843
Kzo9I	GATC	3 cut(s)	645, 653, 759
LmnI	GCTCC	4 cut(s)	24, 149, 430, 877
Lsp1109I	GCAGC	1 cut(s)	983
LweI	GCATC	2 cut(s)	713, 994
MaeI	CTAG	3 cut(s)	44, 329, 578
MaeII	ACGT	2 cut(s)	792, 801
MaeIII	GTNAC	3 cut(s)	490, 620, 1039
MalI	GATC	3 cut(s)	647, 655, 761
MboI	GATC	3 cut(s)	645, 653, 759
MboII	GAAGA	2 cut(s)	412, 430
MfeI	CAATTG	3 cut(s)	142, 524, 1035
MflI	RGATCY	2 cut(s)	645, 653
MhlI	GDGCHC	2 cut(s)	111, 882
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	134, 142, 299, 524, 698, 905, 1021, 1035
MluI	ACGCGT	1 cut(s)	271
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	3 cut(s)	247, 730, 1070
MnlI	CCTC	3 cut(s)	365, 743, 750
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	1000
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1096
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	818, 842
MspI	CCGG	3 cut(s)	693, 897, 1001
MspR9I	CCNGG	2 cut(s)	477, 897
MunI	CAATTG	3 cut(s)	142, 524, 1035
MvaI	CCWGG	1 cut(s)	477
MvnI	CGCG	3 cut(s)	273, 837, 842
MwoI	GCNNNNNNNGC	3 cut(s)	615, 819, 1069
NciI	CCSGG	1 cut(s)	897
NdeII	GATC	3 cut(s)	645, 653, 759
NlaIII	CATG	6 cut(s)	188, 355, 362, 425, 854, 971
NlaIV	GGNNCC	2 cut(s)	599, 655
NmuCI	GTSAC	3 cut(s)	490, 620, 1039
NspI	RCATGY	2 cut(s)	355, 971
PauI	GCGCGC	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PfeI	GAWTC	3 cut(s)	218, 285, 574
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	608, 841, 973
PleI	GAGTC	1 cut(s)	1036
PpsI	GAGTC	1 cut(s)	1036
Ppu21I	YACGTR	1 cut(s)	802
Psp124BI	GAGCTC	2 cut(s)	111, 882
Psp6I	CCWGG	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	599, 655
PspPI	GGNCC	2 cut(s)	550, 812
PsuI	RGATCY	2 cut(s)	645, 653
PteI	GCGCGC	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	2 cut(s)	111, 882
SacII	CCGCGG	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	1096
SatI	GCNGC	3 cut(s)	607, 840, 972
Sau3AI	GATC	3 cut(s)	645, 653, 759
Sau96I	GGNCC	2 cut(s)	550, 812
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	2 cut(s)	477, 897
SduI	GDGCHC	2 cut(s)	111, 882
SfaNI	GCATC	2 cut(s)	713, 994
SfcI	CTRYAG	2 cut(s)	1057, 1089
Sfr303I	CCGCGG	1 cut(s)	843
SgrBI	CCGCGG	1 cut(s)	843
SmlI	CTYRAG	3 cut(s)	734, 741, 926
SmoI	CTYRAG	3 cut(s)	734, 741, 926
Sse9I	AATT	8 cut(s)	134, 142, 299, 524, 698, 905, 1021, 1035
SsiI	CCGC	5 cut(s)	606, 618, 840, 842, 948
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	3 cut(s)	44, 329, 578
SstI	GAGCTC	2 cut(s)	111, 882
StyD4I	CCNGG	2 cut(s)	475, 895
StyI	CCWWGG	2 cut(s)	511, 601
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	2 cut(s)	795, 804
TaqI	TCGA	1 cut(s)	1085
TasI	AATT	8 cut(s)	134, 142, 299, 524, 698, 905, 1021, 1035
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	2 cut(s)	609, 842
TfiI	GAWTC	3 cut(s)	218, 285, 574
Tru1I	TTAA	1 cut(s)	1096
Tru9I	TTAA	1 cut(s)	1096
TscAI	CASTG	3 cut(s)	228, 499, 576
TseFI	GTSAC	3 cut(s)	490, 620, 1039
TseI	GCWGC	1 cut(s)	971
Tsp45I	GTSAC	3 cut(s)	490, 620, 1039
TspDTI	ATGAA	7 cut(s)	22, 93, 237, 347, 354, 429, 554
TspGWI	ACGGA	1 cut(s)	697
TspRI	CASTG	3 cut(s)	228, 499, 576
XapI	RAATTY	2 cut(s)	134, 698
XceI	RCATGY	2 cut(s)	355, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	3 cut(s)	44, 329, 578
ZraI	GACGTC	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.