Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004802

Physical Location & Seq

Genomic Coordinates Reverse (-)

25160131 .. 25162737

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G270200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCCTCTCACACTGTTTTCATGTAAACCCATTAATCTCTTTAATTCTCCCCATCCCATTAAATTGTTGTCACACATTTTCTCATTCTTTGCCAAGAACAATATGGCCAAAATTTGTGTGTTGCTTTGTTTCATCCTCCTAGCTGCTTCTGGGTTTGCCAATGTTTCTGGTTCTGAACCAAAGGAGAAGAAGGTAGGCATATATGAGCTCAAGAAGGGGGATCTTTCAGTCAAATTCACCAACTGGGGTGCAACCATCATCTCCCTTGTCTTCCCTGACAAAAATGGAAAGCTAGCTGATGTAGTTCTTGGGTACGATACAATCAAGGAATACACGAATGATACTTCATACATTGGTGCTATTGTTGGACGGGTTGCTAACAGAATTGGAGGAGCTCAATTCACATTGAATGGAACTCATTACAAGCTAGTTGCTAATGAAGGAAAAAACGTTCTTCATGGTGGGCTTATAGGATTTAGTGATGTTGTTTGGAAAGTGCAGAAGTATCAGAATGAAGGCGATGCTCCTCACATTGTCTTCACCTACCATAGTGCAGATGGTGAAGAAGGATTTCCTGGTGATCTGCTAGTCACAGTAAGCTACACTCTCCTTGGAGACAAGCAATTGAGTGTTAAAATGAAAGCTAAGGCCCTAAACAAGCCAACCCCAGTGAATCTAGCTCAACACACCTACTGGAACCTTGGTGGTCACAACTGTGGTGATGTTCTGTCCCAATATATCAAGATCTTTGCATCCCAAATCACTCTGGTAGACAGCCATCTCATTCCCACTGGCAAGTTTGCATCTGTGAAAGGAACCCCTTATGATTTCCTCAAACCGAAAGCCGTTGGCAGCAGGATCAACAAGCTGGCCAGCGGTTACGACATCAACTACGTGCTTGATGGCGGCGCAGGCAACAAGTTGAAGCCGGCAGCGGTGGTGTATGATAAAAAGTCTGGAAGGGTTTTGGAGCTGTCAACAAATGCTCCTGGTTTGCAGTTTTACACAAGTAACTTTCTCAAGGATGTGAAAGGAAAAGGTGGGTTTGTGTATGAACCACATGCAGCATTGTGTTTGGAGACTCAAGGATTTCCTGATGCAGTCAATCACCCTAATTTTCCTTCAACGATTGTGACTCCAAAAAAGCCCTACAAGCATAATATGCTGTTTAAGTTTTCAACTAAAGCTCCATATGCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

401

Amino Acids

43.61

Weight (kDa)

9.35

Isoelectric Point (pI)

17.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47800
fragaria_vesca	FvH4_5g15261 FvH4_6g49081
malus_domestica	MD14G1196700.v1.1 MD17G1048800.v1.1
prunus_persica	Prupe.3G270200_v2.0.a1 Prupe.5G188800_v2.0.a1 Prupe.5G188800_v2.0.a1
pyrus_communis	pycom14g16350 pycom17g04380
rosa_chinensis	RchiOBHm_Chr2g0168911 RchiOBHm_Chr7g0180821
rosa_laevigata	RLG00000005227 RLG00000021813
rosa_multiflora	Rmu_sc0007457.1_g000006 Rmu_ssc0000393.1_g000013
rosa_roxburghii	Rroxscaffold_2G00082600 Rroxscaffold_3G00272500
rosa_rugosa	Rorug02G0536000 Rorug06G0436400.1 Rorug06G0436500.1 Rorug06G0436600
rosa_samantha	Rh2AG607000 Rh2BG619800 Rh2CG588400 Rh2DG630500 Rh7BG037900 Rh7CG039400 Rh7DG037900
rosa_wichuraiana	Rw2G050330 Rw7G003140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	771
AciI	CCGC	3 cut(s)	876, 906, 935
AclI	AACGTT	1 cut(s)	450
AclWI	GGATC	2 cut(s)	228, 866
AcoI	YGGCCR	2 cut(s)	105, 870
AcsI	RAATTY	2 cut(s)	111, 233
AfaI	GTAC	1 cut(s)	314
AgsI	TTSAA	4 cut(s)	409, 925, 1125, 1179
AjnI	CCWGG	2 cut(s)	574, 988
AleI	CACNNNNGTG	1 cut(s)	714
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
Alw21I	GWGCWC	2 cut(s)	210, 397
Alw26I	GTCTC	2 cut(s)	609, 1073
AlwI	GGATC	2 cut(s)	228, 866
AoxI	GGCC	3 cut(s)	105, 648, 870
ApeKI	GCWGC	4 cut(s)	143, 852, 932, 1064
ApoI	RAATTY	2 cut(s)	111, 233
AseI	ATTAAT	1 cut(s)	33
Asp700I	GAANNNNTTC	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	911
AspS9I	GGNCC	1 cut(s)	649
AsuHPI	GGTGA	6 cut(s)	229, 532, 572, 590, 731, 1100
AsuNHI	GCTAGC	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	107, 872
BanII	GRGCYC	2 cut(s)	210, 397
BbsI	GAAGAC	2 cut(s)	262, 529
Bbv12I	GWGCWC	2 cut(s)	210, 397
BbvI	GCAGC	4 cut(s)	130, 864, 944, 1076
BccI	CCATC	5 cut(s)	60, 263, 551, 786, 896
BceAI	ACGGC	1 cut(s)	830
BciT130I	CCWGG	2 cut(s)	576, 990
BcoDI	GTCTC	2 cut(s)	609, 1073
BfaI	CTAG	5 cut(s)	140, 293, 428, 587, 677
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	5 cut(s)	144, 853, 907, 933, 1065
BlsI	GCNGC	5 cut(s)	145, 854, 908, 934, 1066
Bme1390I	CCNGG	2 cut(s)	576, 990
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	2 cut(s)	698, 817
BmrFI	CCNGG	2 cut(s)	576, 990
BmrI	ACTGGG	2 cut(s)	253, 662
BmsI	GCATC	4 cut(s)	511, 761, 812, 1087
BmtI	GCTAGC	1 cut(s)	296
BmuI	ACTGGG	2 cut(s)	253, 662
BpiI	GAAGAC	2 cut(s)	262, 529
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	3 cut(s)	194, 1004, 1068
BsaAI	YACGTR	1 cut(s)	895
BsaJI	CCNNGG	2 cut(s)	610, 700
BsaXI	ACNNNNNCTCC	4 cut(s)	970, 1000, 1171, 1201
Bse118I	RCCGGY	1 cut(s)	928
Bse1I	ACTGG	4 cut(s)	248, 668, 698, 796
BseBI	CCWGG	2 cut(s)	576, 990
BseDI	CCNNGG	2 cut(s)	610, 700
BseGI	GGATG	4 cut(s)	52, 132, 752, 1030
BseNI	ACTGG	4 cut(s)	248, 668, 698, 796
BseRI	GAGGAG	2 cut(s)	405, 516
BseXI	GCAGC	4 cut(s)	130, 864, 944, 1076
BsgI	GTGCAG	2 cut(s)	518, 573
BshFI	GGCC	3 cut(s)	107, 650, 872
BsiHKAI	GWGCWC	2 cut(s)	210, 397
BsiSI	CCGG	1 cut(s)	929
BslFI	GGGAC	1 cut(s)	715
BsmAI	GTCTC	2 cut(s)	609, 1073
BsmFI	GGGAC	1 cut(s)	715
BsnI	GGCC	3 cut(s)	107, 650, 872
Bsp1286I	GDGCHC	2 cut(s)	210, 397
Bsp143I	GATC	4 cut(s)	220, 580, 744, 858
BspACI	CCGC	3 cut(s)	876, 906, 935
BspANI	GGCC	3 cut(s)	107, 650, 872
BspLI	GGNNCC	2 cut(s)	698, 817
BspOI	GCTAGC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	228, 866
BsrFI	RCCGGY	1 cut(s)	928
BsrI	ACTGG	4 cut(s)	248, 668, 698, 796
BssAI	RCCGGY	1 cut(s)	928
BssECI	CCNNGG	2 cut(s)	610, 700
BssMI	GATC	4 cut(s)	220, 580, 744, 858
BssT1I	CCWWGG	2 cut(s)	610, 700
Bst2UI	CCWGG	2 cut(s)	576, 990
Bst4CI	ACNGT	3 cut(s)	15, 595, 716
BstAPI	GCANNNNNTGC	1 cut(s)	1162
BstBAI	YACGTR	1 cut(s)	895
BstC8I	GCNNGC	5 cut(s)	294, 870, 874, 913, 930
BstDEI	CTNAG	1 cut(s)	645
BstF5I	GGATG	4 cut(s)	52, 132, 752, 1030
BstHHI	GCGC	1 cut(s)	911
BstKTI	GATC	4 cut(s)	223, 583, 747, 861
BstMAI	GTCTC	2 cut(s)	609, 1073
BstMBI	GATC	4 cut(s)	220, 580, 744, 858
BstMWI	GCNNNNNNNGC	4 cut(s)	912, 1153, 1162, 1193
BstNI	CCWGG	2 cut(s)	576, 990
BstNSI	RCATGY	1 cut(s)	1064
BstSCI	CCNGG	2 cut(s)	574, 988
BstV1I	GCAGC	4 cut(s)	130, 864, 944, 1076
BstV2I	GAAGAC	2 cut(s)	262, 529
BstX2I	RGATCY	2 cut(s)	220, 744
BstYI	RGATCY	2 cut(s)	220, 744
BsuRI	GGCC	3 cut(s)	107, 650, 872
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	4 cut(s)	52, 132, 752, 1030
BtsIMutI	CAGTG	3 cut(s)	11, 675, 789
Cac8I	GCNNGC	5 cut(s)	294, 870, 874, 913, 930
CfoI	GCGC	1 cut(s)	911
Cfr10I	RCCGGY	1 cut(s)	928
Cfr13I	GGNCC	1 cut(s)	649
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	3 cut(s)	21, 458, 1061
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	4 cut(s)	222, 582, 746, 860
DpnII	GATC	4 cut(s)	220, 580, 744, 858
EaeI	YGGCCR	2 cut(s)	105, 870
Ecl136II	GAGCTC	2 cut(s)	208, 395
Eco130I	CCWWGG	2 cut(s)	610, 700
Eco24I	GRGCYC	2 cut(s)	210, 397
Eco53kI	GAGCTC	2 cut(s)	208, 395
EcoICRI	GAGCTC	2 cut(s)	208, 395
EcoO109I	RGGNCCY	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	574, 988
EcoT14I	CCWWGG	2 cut(s)	610, 700
EcoT38I	GRGCYC	2 cut(s)	210, 397
ErhI	CCWWGG	2 cut(s)	610, 700
FaeI	CATG	3 cut(s)	24, 461, 1064
FaqI	GGGAC	1 cut(s)	715
FatI	CATG	3 cut(s)	20, 457, 1060
FauNDI	CATATG	1 cut(s)	1192
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	5 cut(s)	144, 853, 907, 933, 1065
FokI	GGATG	4 cut(s)	39, 119, 739, 1037
FriOI	GRGCYC	2 cut(s)	210, 397
Fsp4HI	GCNGC	5 cut(s)	144, 853, 907, 933, 1065
FspBI	CTAG	5 cut(s)	140, 293, 428, 587, 677
GlaI	GCGC	1 cut(s)	910
GluI	GCNGC	5 cut(s)	144, 853, 907, 933, 1065
HaeIII	GGCC	3 cut(s)	107, 650, 872
HapII	CCGG	1 cut(s)	929
HhaI	GCGC	1 cut(s)	911
Hin1II	CATG	3 cut(s)	24, 461, 1064
Hin6I	GCGC	1 cut(s)	909
HinP1I	GCGC	1 cut(s)	909
HincII	GTYRAC	1 cut(s)	978
HindII	GTYRAC	1 cut(s)	978
HinfI	GANTC	3 cut(s)	673, 1081, 1135
HpaII	CCGG	1 cut(s)	929
HphI	GGTGA	6 cut(s)	229, 532, 572, 590, 731, 1100
Hpy166II	GTNNAC	3 cut(s)	26, 772, 978
Hpy188I	TCNGA	2 cut(s)	175, 510
Hpy188III	TCNNGA	4 cut(s)	211, 742, 957, 1094
Hpy8I	GTNNAC	3 cut(s)	26, 772, 978
HpyAV	CCTTC	7 cut(s)	184, 208, 434, 509, 560, 954, 1131
HpyCH4III	ACNGT	3 cut(s)	15, 595, 716
HpyCH4IV	ACGT	2 cut(s)	450, 894
HpyCH4V	TGCA	8 cut(s)	251, 499, 554, 752, 803, 997, 1064, 1100
HpyF10VI	GCNNNNNNNGC	4 cut(s)	912, 1153, 1162, 1193
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	2 cut(s)	450, 894
Hsp92II	CATG	3 cut(s)	24, 461, 1064
HspAI	GCGC	1 cut(s)	909
KroI	GCCGGC	1 cut(s)	928
KroNI	GCCGGC	1 cut(s)	930
Kzo9I	GATC	4 cut(s)	220, 580, 744, 858
LmnI	GCTCC	5 cut(s)	392, 529, 970, 991, 1192
Lsp1109I	GCAGC	4 cut(s)	130, 864, 944, 1076
LweI	GCATC	4 cut(s)	511, 761, 812, 1087
MaeI	CTAG	5 cut(s)	140, 293, 428, 587, 677
MaeII	ACGT	2 cut(s)	450, 894
MaeIII	GTNAC	6 cut(s)	69, 589, 707, 878, 1010, 1132
MalI	GATC	4 cut(s)	222, 582, 746, 860
MboI	GATC	4 cut(s)	220, 580, 744, 858
MboII	GAAGA	5 cut(s)	199, 262, 446, 529, 575
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	2 cut(s)	220, 744
MhlI	GDGCHC	2 cut(s)	210, 397
MlsI	TGGCCA	2 cut(s)	107, 872
MluCI	AATT	8 cut(s)	43, 62, 111, 233, 384, 398, 623, 1114
MluNI	TGGCCA	2 cut(s)	107, 872
MlyI	GAGTC	2 cut(s)	1075, 1129
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	5 cut(s)	15, 146, 383, 537, 842
Mox20I	TGGCCA	2 cut(s)	107, 872
MroNI	GCCGGC	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	2 cut(s)	107, 872
MseI	TTAA	5 cut(s)	33, 42, 60, 633, 1170
MslI	CAYNNNNRTG	1 cut(s)	714
Msp20I	TGGCCA	2 cut(s)	107, 872
MspA1I	CMGCKG	2 cut(s)	876, 935
MspI	CCGG	1 cut(s)	929
MspR9I	CCNGG	2 cut(s)	576, 990
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	2 cut(s)	576, 990
MwoI	GCNNNNNNNGC	4 cut(s)	912, 1153, 1162, 1193
NaeI	GCCGGC	1 cut(s)	930
NdeI	CATATG	1 cut(s)	1192
NdeII	GATC	4 cut(s)	220, 580, 744, 858
NgoMIV	GCCGGC	1 cut(s)	928
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	24, 461, 1064
NlaIV	GGNNCC	2 cut(s)	698, 817
NmuCI	GTSAC	4 cut(s)	69, 589, 707, 1132
NspI	RCATGY	1 cut(s)	1064
OliI	CACNNNNGTG	1 cut(s)	714
PdiI	GCCGGC	1 cut(s)	930
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	673
PkrI	GCNGC	5 cut(s)	145, 854, 908, 934, 1066
PleI	GAGTC	2 cut(s)	1075, 1129
PpsI	GAGTC	2 cut(s)	1075, 1129
Ppu21I	YACGTR	1 cut(s)	895
PshBI	ATTAAT	1 cut(s)	33
Psp124BI	GAGCTC	2 cut(s)	210, 397
Psp1406I	AACGTT	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	574, 988
PspGI	CCWGG	2 cut(s)	574, 988
PspN4I	GGNNCC	2 cut(s)	698, 817
PspPI	GGNCC	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	220, 744
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	714
SacI	GAGCTC	2 cut(s)	210, 397
SaqAI	TTAA	5 cut(s)	33, 42, 60, 633, 1170
SatI	GCNGC	5 cut(s)	144, 853, 907, 933, 1065
Sau3AI	GATC	4 cut(s)	220, 580, 744, 858
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	2 cut(s)	1075, 1129
ScrFI	CCNGG	2 cut(s)	576, 990
SduI	GDGCHC	2 cut(s)	210, 397
SfaNI	GCATC	4 cut(s)	511, 761, 812, 1087
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	3 cut(s)	209, 1019, 1083
SmoI	CTYRAG	3 cut(s)	209, 1019, 1083
Sse9I	AATT	8 cut(s)	43, 62, 111, 233, 384, 398, 623, 1114
SsiI	CCGC	3 cut(s)	876, 906, 935
SspMI	CTAG	5 cut(s)	140, 293, 428, 587, 677
SstI	GAGCTC	2 cut(s)	210, 397
StyD4I	CCNGG	2 cut(s)	574, 988
StyI	CCWWGG	2 cut(s)	610, 700
TaaI	ACNGT	3 cut(s)	15, 595, 716
TaiI	ACGT	2 cut(s)	453, 897
TasI	AATT	8 cut(s)	43, 62, 111, 233, 384, 398, 623, 1114
TauI	GCSGC	1 cut(s)	909
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	5 cut(s)	33, 42, 60, 633, 1170
Tru9I	TTAA	5 cut(s)	33, 42, 60, 633, 1170
TscAI	CASTG	3 cut(s)	18, 675, 796
TseFI	GTSAC	4 cut(s)	69, 589, 707, 1132
TseI	GCWGC	4 cut(s)	143, 852, 932, 1064
Tsp45I	GTSAC	4 cut(s)	69, 589, 707, 1132
TspDTI	ATGAA	8 cut(s)	9, 121, 336, 446, 453, 528, 653, 1068
TspRI	CASTG	3 cut(s)	18, 675, 796
VspI	ATTAAT	1 cut(s)	33
XapI	RAATTY	2 cut(s)	111, 233
XceI	RCATGY	1 cut(s)	1064
XcmI	CCANNNNNNNNNTGG	2 cut(s)	100, 554
XmiI	GTMKAC	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	5 cut(s)	140, 293, 428, 587, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.