RchiOBHm_Chr2g0168911

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004802
Physical Location & Seq
Reverse (-)
83215899 .. 83218557
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53654

Sequence Viewer

Length: 1098 bp
ATGGCCAACATTTCTGTGCTCCTTTGTTTGGTCATTACCATCCTAGTGGCTTCTGGGTTTGCTAATGGTTCTGGTTATGAACCAAAGGAGAAGGTTGGTGTTTATGAGCTCAAGAAGGGTGATTTGTCTGTCAAATTCACCAATTGGGGTGCAACTATCATCTCCCTAATCCTGCCTGACAAACATGGAAAGCTGGCAGATGTTGTTCTTGGGTATGATTCAGTGAATGAGTACAAGAATGATACTTCATACATCGGTGCTATTGTCGGACGCGTTGCTAACAGAATCGGTGGCGCTCAATTTACTTTGAATGGAACCCATTACAAGCTAGTTGCTAATGAAGGAAAAAACATGCTTCATGGTGGGCTTAGAGGATTTAGTGATGTTGTTTGGAAAGTGAAGAAGTATAAGAATGAAGGTCATACTCCTTCCATTGTCTTCACTTATCATAGTGCTGATGGGGAACAAGGGTTTCCTGGAGATGTTATTGTCACTGTCAGCTACACACTCCTTGGAGACAAACAATTGATCGTGAAAATGAAAGCAAAGGCCCTAAACAAGCCAACTCCAGTGAATCTAGCTCAGCACACTTACTGGAACCTTGGCGGCCACAATAGTGGTGACATTCTCTCCCAACACATCCAGATCTTTGCATCCAAAATCACTCTGGTAGATAGCGGTCTCATCCCCACCGGAAAATTTGCATCCGTGAAAGGCACACCCTATGATTTCCTCAAGCCTCAAGCAGTTGGAAGCAGGATCAACAAGCTTACGGCAACCAAAGGTTATGACATCAACTACGTGCTTGATGGCCCAGCTGGCAACAAGTTGAAGCGCGCCGCAGTGGTGCGTGACAGCAAGTCAGGAAGGATGATGGAGCTCTCAACAAATGTTCCCGGTATGCAGTTCTACACAAGCAACTATCTCCAGGATGTGAAGGGGAAAGGTGGGTTTGTATACCAACCACGTGCAGCATTGTGTTTGGAAACCCAGGGATTTCCTGATGCTGTGAACCACCCTAATTTCCCTTCAACAATTGTGACTCCAACAAAGTCCTATAGGCATTATATGCTGTTCAAGTTTTCAACTACAGCTTAA

Protein Analysis

365

Amino Acids

39.75

Weight (kDa)

9.52

Isoelectric Point (pI)

20.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 34 - 359 1.4e-92 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 957
AccII CGCG 2 cut(s) 273, 837
AciI CCGC 3 cut(s) 606, 678, 840
AclWI GGATC 1 cut(s) 767
AcoI YGGCCR 2 cut(s) 3, 607
AcsI RAATTY 2 cut(s) 134, 698
AcvI CACGTG 1 cut(s) 968
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 5 cut(s) 310, 832, 1032, 1078, 1086
AhdI GACNNNNNGTC 1 cut(s) 859
AjnI CCWGG 3 cut(s) 475, 927, 990
AleI CACNNNNGTG 1 cut(s) 615
AluBI AGCT 9 cut(s) 109, 193, 328, 501, 581, 769, 818, 880, 1094
AluI AGCT 9 cut(s) 109, 193, 328, 501, 581, 769, 818, 880, 1094
Alw21I GWGCWC 3 cut(s) 21, 111, 882
Alw26I GTCTC 2 cut(s) 510, 686
AlwI GGATC 1 cut(s) 767
AoxI GGCC 4 cut(s) 3, 549, 607, 811
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 2 cut(s) 134, 698
AspLEI GCGC 3 cut(s) 296, 837, 839
AspS9I GGNCC 2 cut(s) 550, 812
AsuC2I CCSGG 1 cut(s) 897
AsuHPI GGTGA 3 cut(s) 130, 131, 632
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 111, 882
BbrPI CACGTG 1 cut(s) 968
BbsI GAAGAC 1 cut(s) 430
Bbv12I GWGCWC 3 cut(s) 21, 111, 882
BbvI GCAGC 1 cut(s) 983
BccI CCATC 4 cut(s) 47, 452, 803, 868
BceAI ACGGC 1 cut(s) 789
BciT130I CCWGG 3 cut(s) 477, 929, 992
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 2 cut(s) 510, 686
BfaI CTAG 3 cut(s) 44, 329, 578
BfmI CTRYAG 2 cut(s) 1057, 1089
BfoI RGCGCY 1 cut(s) 297
BglI GCCNNNNNGGC 1 cut(s) 819
BglII AGATCT 1 cut(s) 645
BisI GCNGC 3 cut(s) 607, 840, 972
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 3 cut(s) 608, 841, 973
Bme1390I CCNGG 4 cut(s) 477, 897, 929, 992
BmeRI GACNNNNNGTC 1 cut(s) 859
BmgT120I GGNCC 2 cut(s) 550, 812
BmiI GGNNCC 2 cut(s) 316, 599
BmrFI CCNGG 4 cut(s) 477, 897, 929, 992
BmsI GCATC 3 cut(s) 662, 713, 994
BpiI GAAGAC 1 cut(s) 430
BpmI CTGGAG 3 cut(s) 498, 552, 911
Bpu1102I GCTNAGC 1 cut(s) 582
BpuEI CTTGAG 3 cut(s) 95, 719, 726
BpuMI CCSGG 1 cut(s) 897
BsaAI YACGTR 2 cut(s) 802, 968
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 4 cut(s) 511, 601, 990, 991
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 569, 599
BseBI CCWGG 3 cut(s) 477, 929, 992
BseDI CCNNGG 4 cut(s) 511, 601, 990, 991
BseGI GGATG 7 cut(s) 39, 639, 653, 684, 704, 876, 937
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 2 cut(s) 569, 599
BsePI GCGCGC 1 cut(s) 835
BseXI GCAGC 1 cut(s) 983
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 1 cut(s) 990
Bsh1236I CGCG 2 cut(s) 273, 837
BshFI GGCC 4 cut(s) 5, 551, 609, 813
BsiHKAI GWGCWC 3 cut(s) 21, 111, 882
BsiSI CCGG 2 cut(s) 693, 897
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 510, 686
BsnI GGCC 4 cut(s) 5, 551, 609, 813
Bso31I GGTCTC 1 cut(s) 686
Bsp1286I GDGCHC 3 cut(s) 21, 111, 882
Bsp143I GATC 3 cut(s) 528, 645, 759
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 3 cut(s) 606, 678, 840
BspANI GGCC 4 cut(s) 5, 551, 609, 813
BspCNI CTCAG 1 cut(s) 595
BspFNI CGCG 2 cut(s) 273, 837
BspLI GGNNCC 2 cut(s) 316, 599
BspPI GGATC 1 cut(s) 767
BspTNI GGTCTC 1 cut(s) 686
BsrI ACTGG 2 cut(s) 569, 599
BssECI CCNNGG 4 cut(s) 511, 601, 990, 991
BssHII GCGCGC 1 cut(s) 835
BssMI GATC 3 cut(s) 528, 645, 759
BssNAI GTATAC 1 cut(s) 958
BssT1I CCWWGG 2 cut(s) 511, 601
Bst1107I GTATAC 1 cut(s) 958
Bst2UI CCWGG 3 cut(s) 477, 929, 992
Bst4CI ACNGT 1 cut(s) 496
BstAPI GCANNNNNTGC 1 cut(s) 1069
BstBAI YACGTR 2 cut(s) 802, 968
BstC8I GCNNGC 3 cut(s) 195, 820, 837
BstDEI CTNAG 2 cut(s) 368, 582
BstF5I GGATG 7 cut(s) 39, 639, 653, 684, 704, 876, 937
BstFNI CGCG 2 cut(s) 273, 837
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 3 cut(s) 296, 837, 839
BstKTI GATC 3 cut(s) 531, 648, 762
BstMAI GTCTC 2 cut(s) 510, 686
BstMBI GATC 3 cut(s) 528, 645, 759
BstMWI GCNNNNNNNGC 2 cut(s) 819, 1069
BstNI CCWGG 3 cut(s) 477, 929, 992
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 4 cut(s) 475, 895, 927, 990
BstSFI CTRYAG 2 cut(s) 1057, 1089
BstUI CGCG 2 cut(s) 273, 837
BstV1I GCAGC 1 cut(s) 983
BstV2I GAAGAC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 645
BstXI CCANNNNNNTGG 2 cut(s) 46, 617
BstYI RGATCY 1 cut(s) 645
BstZ17I GTATAC 1 cut(s) 958
BsuRI GGCC 4 cut(s) 5, 551, 609, 813
BtsCI GGATG 7 cut(s) 39, 639, 653, 684, 704, 876, 937
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 4 cut(s) 228, 492, 576, 849
Cac8I GCNNGC 3 cut(s) 195, 820, 837
CfoI GCGC 3 cut(s) 296, 837, 839
Cfr13I GGNCC 2 cut(s) 550, 812
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 232
CviAII CATG 3 cut(s) 185, 352, 359
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 2 cut(s) 368, 582
DpnI GATC 3 cut(s) 530, 647, 761
DpnII GATC 3 cut(s) 528, 645, 759
DriI GACNNNNNGTC 1 cut(s) 859
EaeI YGGCCR 2 cut(s) 3, 607
Eam1105I GACNNNNNGTC 1 cut(s) 859
Ecl136II GAGCTC 2 cut(s) 109, 880
Eco130I CCWWGG 2 cut(s) 511, 601
Eco24I GRGCYC 2 cut(s) 111, 882
Eco31I GGTCTC 1 cut(s) 686
Eco53kI GAGCTC 2 cut(s) 109, 880
Eco72I CACGTG 1 cut(s) 968
EcoICRI GAGCTC 2 cut(s) 109, 880
EcoO109I RGGNCCY 1 cut(s) 550
EcoRII CCWGG 3 cut(s) 475, 927, 990
EcoT14I CCWWGG 2 cut(s) 511, 601
EcoT38I GRGCYC 2 cut(s) 111, 882
ErhI CCWWGG 2 cut(s) 511, 601
FaeI CATG 3 cut(s) 188, 355, 362
FatI CATG 3 cut(s) 184, 351, 358
FblI GTMKAC 1 cut(s) 957
Fnu4HI GCNGC 3 cut(s) 607, 840, 972
FokI GGATG 7 cut(s) 26, 626, 640, 671, 691, 883, 944
FriOI GRGCYC 2 cut(s) 111, 882
Fsp4HI GCNGC 3 cut(s) 607, 840, 972
FspBI CTAG 3 cut(s) 44, 329, 578
GlaI GCGC 3 cut(s) 295, 836, 838
GluI GCNGC 3 cut(s) 607, 840, 972
GsaI CCCAGC 1 cut(s) 818
GsuI CTGGAG 3 cut(s) 498, 552, 911
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 4 cut(s) 5, 551, 609, 813
HapII CCGG 2 cut(s) 693, 897
HgaI GACGC 1 cut(s) 279
HhaI GCGC 3 cut(s) 296, 837, 839
Hin1II CATG 3 cut(s) 188, 355, 362
Hin6I GCGC 3 cut(s) 294, 835, 837
HinP1I GCGC 3 cut(s) 294, 835, 837
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 4 cut(s) 218, 285, 574, 1042
HpaII CCGG 2 cut(s) 693, 897
HphI GGTGA 3 cut(s) 130, 131, 632
Hpy166II GTNNAC 2 cut(s) 958, 1012
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 5 cut(s) 112, 532, 643, 864, 1001
Hpy8I GTNNAC 2 cut(s) 958, 1012
HpyAV CCTTC 8 cut(s) 85, 109, 335, 410, 438, 861, 931, 1038
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 2 cut(s) 801, 967
HpyCH4V TGCA 5 cut(s) 152, 653, 704, 904, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 819, 1069
HpyF3I CTNAG 2 cut(s) 368, 582
HpySE526I ACGT 2 cut(s) 801, 967
Hsp92II CATG 3 cut(s) 188, 355, 362
HspAI GCGC 3 cut(s) 294, 835, 837
Kzo9I GATC 3 cut(s) 528, 645, 759
LmnI GCTCC 2 cut(s) 24, 877
Lsp1109I GCAGC 1 cut(s) 983
LweI GCATC 3 cut(s) 662, 713, 994
MaeI CTAG 3 cut(s) 44, 329, 578
MaeII ACGT 2 cut(s) 801, 967
MaeIII GTNAC 4 cut(s) 490, 620, 851, 1039
MalI GATC 3 cut(s) 530, 647, 761
MboI GATC 3 cut(s) 528, 645, 759
MboII GAAGA 2 cut(s) 412, 430
MfeI CAATTG 3 cut(s) 142, 524, 1035
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 3 cut(s) 21, 111, 882
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 134, 142, 299, 524, 698, 1021, 1035
MluI ACGCGT 1 cut(s) 271
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 1036
MmeI TCCRAC 3 cut(s) 247, 730, 1070
MnlI CCTC 3 cut(s) 365, 743, 750
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 1096
MslI CAYNNNNRTG 3 cut(s) 14, 44, 615
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 2 cut(s) 693, 897
MspR9I CCNGG 4 cut(s) 477, 897, 929, 992
MunI CAATTG 3 cut(s) 142, 524, 1035
MvaI CCWGG 3 cut(s) 477, 929, 992
MvnI CGCG 2 cut(s) 273, 837
MwoI GCNNNNNNNGC 2 cut(s) 819, 1069
NciI CCSGG 1 cut(s) 897
NdeII GATC 3 cut(s) 528, 645, 759
NlaIII CATG 3 cut(s) 188, 355, 362
NlaIV GGNNCC 2 cut(s) 316, 599
NmuCI GTSAC 4 cut(s) 490, 620, 851, 1039
NspI RCATGY 1 cut(s) 355
OliI CACNNNNGTG 1 cut(s) 615
PasI CCCWGGG 1 cut(s) 991
PauI GCGCGC 1 cut(s) 835
PfeI GAWTC 3 cut(s) 218, 285, 574
PfoI TCCNGGA 2 cut(s) 475, 927
PkrI GCNGC 3 cut(s) 608, 841, 973
PleI GAGTC 1 cut(s) 1036
PmaCI CACGTG 1 cut(s) 968
PmlI CACGTG 1 cut(s) 968
PpsI GAGTC 1 cut(s) 1036
Ppu21I YACGTR 2 cut(s) 802, 968
Psp124BI GAGCTC 2 cut(s) 111, 882
Psp6I CCWGG 3 cut(s) 475, 927, 990
PspCI CACGTG 1 cut(s) 968
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 3 cut(s) 475, 927, 990
PspN4I GGNNCC 2 cut(s) 316, 599
PspPI GGNCC 2 cut(s) 550, 812
PsuI RGATCY 1 cut(s) 645
PteI GCGCGC 1 cut(s) 835
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 3 cut(s) 14, 44, 615
SacI GAGCTC 2 cut(s) 111, 882
SaqAI TTAA 1 cut(s) 1096
SatI GCNGC 3 cut(s) 607, 840, 972
Sau3AI GATC 3 cut(s) 528, 645, 759
Sau96I GGNCC 2 cut(s) 550, 812
SchI GAGTC 1 cut(s) 1036
ScrFI CCNGG 4 cut(s) 477, 897, 929, 992
SduI GDGCHC 3 cut(s) 21, 111, 882
SfaNI GCATC 3 cut(s) 662, 713, 994
SfcI CTRYAG 2 cut(s) 1057, 1089
SmiMI CAYNNNNRTG 3 cut(s) 14, 44, 615
SmlI CTYRAG 3 cut(s) 110, 734, 741
SmoI CTYRAG 3 cut(s) 110, 734, 741
Sse9I AATT 7 cut(s) 134, 142, 299, 524, 698, 1021, 1035
SsiI CCGC 3 cut(s) 606, 678, 840
SspMI CTAG 3 cut(s) 44, 329, 578
SstI GAGCTC 2 cut(s) 111, 882
StyD4I CCNGG 4 cut(s) 475, 895, 927, 990
StyI CCWWGG 2 cut(s) 511, 601
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 2 cut(s) 804, 970
TasI AATT 7 cut(s) 134, 142, 299, 524, 698, 1021, 1035
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 609, 842
TfiI GAWTC 3 cut(s) 218, 285, 574
Tru1I TTAA 1 cut(s) 1096
Tru9I TTAA 1 cut(s) 1096
TscAI CASTG 4 cut(s) 228, 499, 576, 849
TseFI GTSAC 4 cut(s) 490, 620, 851, 1039
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 4 cut(s) 490, 620, 851, 1039
TspDTI ATGAA 6 cut(s) 93, 237, 347, 354, 429, 554
TspGWI ACGGA 1 cut(s) 697
TspRI CASTG 4 cut(s) 228, 499, 576, 849
XapI RAATTY 2 cut(s) 134, 698
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmiI GTMKAC 1 cut(s) 957
XspI CTAG 3 cut(s) 44, 329, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.