Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004802

Physical Location & Seq

Genomic Coordinates Forward (+)

3553774 .. 3557140

Gene Structure 3367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1048800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTTACTCAGCAAAATGTCCAACACTAGTGTTCTACTTTGTTTCATCGTTCTAGCCGCTTTCGCGATTGCGAATGCTTCTGGTTCCGAATCGAAGGAAAGGATTGGTGTGTATGCGCTCAAGAAGGGTGATCTTTCAGTCAAGTTCACCAACTGGGGTGCAACTATCATCTCCCTCGTCTTACCGGACAAAAATGGAAAGCTTGCTGATGTAGTTCTCGGGTACGATTCCGTCAAAGAGTATACGAATGATACTTCTTACATCGGTTCTGTCGTTGGACGGGTTGCTAACAGAATTGGAGGAGCTCAATTTACGTTAAATGGAACTCACTACAAGCTAGTTGCTAATGAGGGAAAAAACATACTTCATGGTGGCAAAAAAGGATTCAGTGATGTTGTCTGGAAAGTGAGAAAGTACAAGAACGAAGGCCATTCTCCTTCCATTGCCTTCACCTATCATAGTGCCGATGGCGAACAAGGATTTCCCGGCGATGTGCTAGCTACCGTGAGCTATACCCTCACTGGAGACAACCAACTGAGCATAAAAATGAAAGCTAAGGCTCTAAACAAACCGACACCGGTCAGTCTAGCTCAACACACCTACTGGAACCTCGGCGGTCACAACAGTGGCGATGTTCTGTCCCAAGACGTCACGATCTTTGCCTCTCATTACACTCCCGTCGACAGTCACCTCATTCCCACCGGCAAAATAGCTTCTGTAAAAGGAACCCCGTACGACTTCCTCAAGCCTGATGCTGTGGGAAGCAGGATCAACAAGCTGACTAGCGGTTACGACATCAACTACTGCCTCGACAGCAGCGGTGTAGGCAACAAACTGAGGCCTGCCGCGGTGGTGCACGACAAGAAGTCCGGGAGGGTTTTAGAGCTGTCGACGAATGCGCCCGGCTTGCAGTTCTACACGAGTAACTCTCTCAAGGATGTGAAGGGGAAAGGAGGGTTTGTGTATGAACCGCATGCAGCGTTGTGTTTGGAGACTCAAGGGTTTCCGGATTCTGTCAATCACCCTAATTTCCCTTCCACAATTGTGACTCCCAAAAAGCCTTACAAGCATTTTATGCTTTTTAAGTTTTCAATTAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

368

Amino Acids

39.63

Weight (kDa)

9.39

Isoelectric Point (pI)

21.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldose_epim	PF01263	38 - 361	1.1e-92	Aldose 1-epimerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47800
fragaria_vesca	FvH4_5g15261 FvH4_6g49081
malus_domestica	MD14G1196700.v1.1 MD17G1048800.v1.1
prunus_persica	Prupe.3G270200_v2.0.a1 Prupe.5G188800_v2.0.a1 Prupe.5G188800_v2.0.a1
pyrus_communis	pycom14g16350 pycom17g04380
rosa_chinensis	RchiOBHm_Chr2g0168911 RchiOBHm_Chr7g0180821
rosa_laevigata	RLG00000005227 RLG00000021813
rosa_multiflora	Rmu_sc0007457.1_g000006 Rmu_ssc0000393.1_g000013
rosa_roxburghii	Rroxscaffold_2G00082600 Rroxscaffold_3G00272500
rosa_rugosa	Rorug02G0536000 Rorug06G0436400.1 Rorug06G0436500.1 Rorug06G0436600
rosa_samantha	Rh2AG607000 Rh2BG619800 Rh2CG588400 Rh2DG630500 Rh7BG037900 Rh7CG039400 Rh7DG037900
rosa_wichuraiana	Rw2G050330 Rw7G003140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	651
AccI	GTMKAC	3 cut(s)	242, 681, 890
AccII	CGCG	2 cut(s)	65, 848
AccIII	TCCGGA	1 cut(s)	1006
AciI	CCGC	7 cut(s)	57, 615, 786, 819, 846, 848, 971
AclWI	GGATC	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	3 cut(s)	224, 416, 734
AgeI	ACCGGT	1 cut(s)	577
AgsI	TTSAA	1 cut(s)	1092
AhdI	GACNNNNNGTC	1 cut(s)	865
AhlI	ACTAGT	1 cut(s)	26
AleI	CACNNNNGTG	2 cut(s)	624, 1043
Alw21I	GWGCWC	2 cut(s)	307, 858
Alw26I	GTCTC	2 cut(s)	519, 986
Alw44I	GTGCAC	1 cut(s)	854
AlwI	GGATC	1 cut(s)	776
Ama87I	CYCGRG	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	1006
AoxI	GGCC	2 cut(s)	427, 839
ApaLI	GTGCAC	1 cut(s)	854
ApeKI	GCWGC	2 cut(s)	816, 977
AsiGI	ACCGGT	1 cut(s)	577
AspLEI	GCGC	2 cut(s)	118, 901
AsuC2I	CCSGG	3 cut(s)	486, 871, 903
AsuHPI	GGTGA	5 cut(s)	139, 140, 442, 680, 1013
AsuNHI	GCTAGC	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	858
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	919
Bbv12I	GWGCWC	2 cut(s)	307, 858
BbvI	GCAGC	2 cut(s)	828, 989
BccI	CCATC	1 cut(s)	461
BcnI	CCSGG	3 cut(s)	486, 871, 903
BcoDI	GTCTC	2 cut(s)	519, 986
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	6 cut(s)	27, 53, 338, 497, 587, 783
BisI	GCNGC	4 cut(s)	57, 817, 846, 978
BlsI	GCNGC	4 cut(s)	58, 818, 847, 979
Bme1390I	CCNGG	3 cut(s)	486, 871, 903
BmeRI	GACNNNNNGTC	1 cut(s)	865
BmeT110I	CYCGRG	1 cut(s)	218
BmiI	GGNNCC	3 cut(s)	85, 608, 727
BmrFI	CCNGG	3 cut(s)	486, 871, 903
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	742
BmtI	GCTAGC	1 cut(s)	500
BmuI	ACTGGG	1 cut(s)	163
BoxI	GACNNNNGTC	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	913, 945
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	4 cut(s)	104, 728, 917, 981
BpuMI	CCSGG	3 cut(s)	486, 871, 903
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	610, 846
BsaWI	WCCGGW	3 cut(s)	184, 577, 1006
BsaXI	ACNNNNNCTCC	2 cut(s)	945, 975
Bse118I	RCCGGY	2 cut(s)	577, 701
Bse1I	ACTGG	3 cut(s)	158, 526, 608
Bse3DI	GCAATG	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	1006
BseDI	CCNNGG	2 cut(s)	610, 846
BseGI	GGATG	1 cut(s)	943
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	22, 527, 827
BseNI	ACTGG	3 cut(s)	158, 526, 608
BseRI	GAGGAG	1 cut(s)	315
BseSI	GKGCMC	1 cut(s)	858
BseXI	GCAGC	2 cut(s)	828, 989
Bsh1236I	CGCG	2 cut(s)	65, 848
BshFI	GGCC	2 cut(s)	429, 841
BshTI	ACCGGT	1 cut(s)	577
BsiHKAI	GWGCWC	2 cut(s)	307, 858
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	7 cut(s)	185, 486, 578, 702, 870, 903, 1007
BsiWI	CGTACG	1 cut(s)	732
BslFI	GGGAC	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	519, 986
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	2 cut(s)	79, 901
BsnI	GGCC	2 cut(s)	429, 841
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	307, 858
Bsp13I	TCCGGA	1 cut(s)	1006
Bsp143I	GATC	3 cut(s)	130, 654, 768
Bsp68I	TCGCGA	1 cut(s)	65
BspACI	CCGC	7 cut(s)	57, 615, 786, 819, 846, 848, 971
BspANI	GGCC	2 cut(s)	429, 841
BspCNI	CTCAG	3 cut(s)	21, 528, 828
BspEI	TCCGGA	1 cut(s)	1006
BspFNI	CGCG	2 cut(s)	65, 848
BspLI	GGNNCC	3 cut(s)	85, 608, 727
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	2 cut(s)	577, 701
BsrI	ACTGG	3 cut(s)	158, 526, 608
BssAI	RCCGGY	2 cut(s)	577, 701
BssECI	CCNNGG	2 cut(s)	610, 846
BssMI	GATC	3 cut(s)	130, 654, 768
BssNAI	GTATAC	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	648
BssSI	CACGAG	1 cut(s)	919
Bst1107I	GTATAC	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	919
Bst4CI	ACNGT	3 cut(s)	505, 626, 686
BstACI	GRCGYC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	1075
BstC8I	GCNNGC	5 cut(s)	204, 498, 843, 908, 975
BstDEI	CTNAG	4 cut(s)	8, 536, 555, 836
BstDSI	CCRYGG	1 cut(s)	846
BstF5I	GGATG	1 cut(s)	943
BstFNI	CGCG	2 cut(s)	65, 848
BstHHI	GCGC	2 cut(s)	118, 901
BstKTI	GATC	3 cut(s)	133, 657, 771
BstMAI	GTCTC	2 cut(s)	519, 986
BstMBI	GATC	3 cut(s)	130, 654, 768
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 813, 825, 907, 1066, 1075
BstNSI	RCATGY	1 cut(s)	977
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSCI	CCNGG	3 cut(s)	484, 869, 901
BstSLI	GKGCMC	1 cut(s)	858
BstUI	CGCG	2 cut(s)	65, 848
BstV1I	GCAGC	2 cut(s)	828, 989
BstZ17I	GTATAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	429, 841
BtgI	CCRYGG	1 cut(s)	846
BtgZI	GCGATG	2 cut(s)	504, 645
BtsCI	GGATG	1 cut(s)	943
BtsIMutI	CAGTG	3 cut(s)	394, 519, 631
BtuMI	TCGCGA	1 cut(s)	65
Cac8I	GCNNGC	5 cut(s)	204, 498, 843, 908, 975
CfoI	GCGC	2 cut(s)	118, 901
Cfr10I	RCCGGY	2 cut(s)	577, 701
Cfr42I	CCGCGG	1 cut(s)	849
Csp6I	GTAC	3 cut(s)	223, 415, 733
CspAI	ACCGGT	1 cut(s)	577
CviAII	CATG	2 cut(s)	368, 974
CviQI	GTAC	3 cut(s)	223, 415, 733
DdeI	CTNAG	4 cut(s)	8, 536, 555, 836
DpnI	GATC	3 cut(s)	132, 656, 770
DpnII	GATC	3 cut(s)	130, 654, 768
DriI	GACNNNNNGTC	1 cut(s)	865
Eam1105I	GACNNNNNGTC	1 cut(s)	865
Ecl136II	GAGCTC	1 cut(s)	305
Eco147I	AGGCCT	1 cut(s)	841
Eco24I	GRGCYC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	2 cut(s)	371, 977
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	2 cut(s)	367, 973
FblI	GTMKAC	3 cut(s)	242, 681, 890
Fnu4HI	GCNGC	4 cut(s)	57, 817, 846, 978
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	4 cut(s)	57, 817, 846, 978
FspBI	CTAG	6 cut(s)	27, 53, 338, 497, 587, 783
GlaI	GCGC	2 cut(s)	117, 900
GluI	GCNGC	4 cut(s)	57, 817, 846, 978
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	429, 841
HapII	CCGG	7 cut(s)	185, 486, 578, 702, 870, 903, 1007
HhaI	GCGC	2 cut(s)	118, 901
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	2 cut(s)	371, 977
Hin6I	GCGC	2 cut(s)	116, 899
HinP1I	GCGC	2 cut(s)	116, 899
HincII	GTYRAC	2 cut(s)	682, 891
HindII	GTYRAC	2 cut(s)	682, 891
HindIII	AAGCTT	2 cut(s)	200, 1098
HinfI	GANTC	6 cut(s)	89, 227, 384, 994, 1010, 1048
HpaII	CCGG	7 cut(s)	185, 486, 578, 702, 870, 903, 1007
HphI	GGTGA	5 cut(s)	139, 140, 442, 680, 1013
Hpy166II	GTNNAC	5 cut(s)	147, 243, 682, 856, 891
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	5 cut(s)	64, 121, 400, 652, 1007
Hpy8I	GTNNAC	5 cut(s)	147, 243, 682, 856, 891
Hpy99I	CGWCG	2 cut(s)	683, 895
HpyAV	CCTTC	7 cut(s)	88, 118, 419, 447, 457, 937, 1044
HpyCH4III	ACNGT	3 cut(s)	505, 626, 686
HpyCH4IV	ACGT	2 cut(s)	314, 648
HpyCH4V	TGCA	4 cut(s)	161, 856, 910, 977
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 813, 825, 907, 1066, 1075
HpyF3I	CTNAG	4 cut(s)	8, 536, 555, 836
HpySE526I	ACGT	2 cut(s)	314, 648
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	2 cut(s)	371, 977
HspAI	GCGC	2 cut(s)	116, 899
Kpn2I	TCCGGA	1 cut(s)	1006
KspI	CCGCGG	1 cut(s)	849
Kzo9I	GATC	3 cut(s)	130, 654, 768
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	2 cut(s)	828, 989
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	6 cut(s)	27, 53, 338, 497, 587, 783
MaeII	ACGT	2 cut(s)	314, 648
MaeIII	GTNAC	7 cut(s)	3, 617, 649, 686, 788, 923, 1045
MalI	GATC	3 cut(s)	132, 656, 770
MboI	GATC	3 cut(s)	130, 654, 768
MfeI	CAATTG	1 cut(s)	1041
MhlI	GDGCHC	2 cut(s)	307, 858
MluCI	AATT	5 cut(s)	294, 308, 1027, 1041, 1092
MlyI	GAGTC	2 cut(s)	988, 1042
MmeI	TCCRAC	2 cut(s)	45, 256
MroI	TCCGGA	1 cut(s)	1006
MseI	TTAA	4 cut(s)	317, 1083, 1095, 1102
MslI	CAYNNNNRTG	3 cut(s)	545, 624, 1043
MspA1I	CMGCKG	2 cut(s)	819, 848
MspI	CCGG	7 cut(s)	185, 486, 578, 702, 870, 903, 1007
MspR9I	CCNGG	3 cut(s)	486, 871, 903
MunI	CAATTG	1 cut(s)	1041
Mva1269I	GAATGC	2 cut(s)	79, 901
MvnI	CGCG	2 cut(s)	65, 848
MwoI	GCNNNNNNNGC	6 cut(s)	62, 813, 825, 907, 1066, 1075
NciI	CCSGG	3 cut(s)	486, 871, 903
NdeII	GATC	3 cut(s)	130, 654, 768
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	2 cut(s)	371, 977
NlaIV	GGNNCC	3 cut(s)	85, 608, 727
NmeAIII	GCCGAG	1 cut(s)	591
NmuCI	GTSAC	4 cut(s)	617, 649, 686, 1045
NruI	TCGCGA	1 cut(s)	65
NspI	RCATGY	1 cut(s)	977
OliI	CACNNNNGTG	2 cut(s)	624, 1043
PaeI	GCATGC	1 cut(s)	977
PceI	AGGCCT	1 cut(s)	841
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	2 cut(s)	79, 901
PfeI	GAWTC	4 cut(s)	89, 227, 384, 1010
Pfl23II	CGTACG	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	869
PinAI	ACCGGT	1 cut(s)	577
PkrI	GCNGC	4 cut(s)	58, 818, 847, 979
PleI	GAGTC	2 cut(s)	988, 1042
PpsI	GAGTC	2 cut(s)	988, 1042
PshAI	GACNNNNGTC	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	307
PspLI	CGTACG	1 cut(s)	732
PspN4I	GGNNCC	3 cut(s)	85, 608, 727
RruI	TCGCGA	1 cut(s)	65
RsaI	GTAC	3 cut(s)	224, 416, 734
RsaNI	GTAC	3 cut(s)	223, 415, 733
RseI	CAYNNNNRTG	3 cut(s)	545, 624, 1043
SacI	GAGCTC	1 cut(s)	307
SacII	CCGCGG	1 cut(s)	849
SalI	GTCGAC	2 cut(s)	680, 889
SaqAI	TTAA	4 cut(s)	317, 1083, 1095, 1102
SatI	GCNGC	4 cut(s)	57, 817, 846, 978
Sau3AI	GATC	3 cut(s)	130, 654, 768
SchI	GAGTC	2 cut(s)	988, 1042
ScrFI	CCNGG	3 cut(s)	486, 871, 903
SduI	GDGCHC	2 cut(s)	307, 858
SfaNI	GCATC	1 cut(s)	742
Sfr303I	CCGCGG	1 cut(s)	849
SgrBI	CCGCGG	1 cut(s)	849
SmiMI	CAYNNNNRTG	3 cut(s)	545, 624, 1043
SmlI	CTYRAG	4 cut(s)	119, 743, 932, 996
SmoI	CTYRAG	4 cut(s)	119, 743, 932, 996
SpeI	ACTAGT	1 cut(s)	26
SphI	GCATGC	1 cut(s)	977
Sse9I	AATT	5 cut(s)	294, 308, 1027, 1041, 1092
SseBI	AGGCCT	1 cut(s)	841
SsiI	CCGC	7 cut(s)	57, 615, 786, 819, 846, 848, 971
SspMI	CTAG	6 cut(s)	27, 53, 338, 497, 587, 783
SstI	GAGCTC	1 cut(s)	307
StuI	AGGCCT	1 cut(s)	841
StyD4I	CCNGG	3 cut(s)	484, 869, 901
TaaI	ACNGT	3 cut(s)	505, 626, 686
TaiI	ACGT	2 cut(s)	317, 651
TaqI	TCGA	4 cut(s)	92, 681, 810, 890
TasI	AATT	5 cut(s)	294, 308, 1027, 1041, 1092
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	2 cut(s)	59, 848
TfiI	GAWTC	4 cut(s)	89, 227, 384, 1010
Tru1I	TTAA	4 cut(s)	317, 1083, 1095, 1102
Tru9I	TTAA	4 cut(s)	317, 1083, 1095, 1102
TscAI	CASTG	3 cut(s)	394, 526, 631
TseFI	GTSAC	4 cut(s)	617, 649, 686, 1045
TseI	GCWGC	2 cut(s)	816, 977
Tsp45I	GTSAC	4 cut(s)	617, 649, 686, 1045
TspDTI	ATGAA	4 cut(s)	34, 356, 563, 981
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	3 cut(s)	394, 526, 631
VneI	GTGCAC	1 cut(s)	854
XceI	RCATGY	1 cut(s)	977
XmiI	GTMKAC	3 cut(s)	242, 681, 890
XspI	CTAG	6 cut(s)	27, 53, 338, 497, 587, 783
ZraI	GACGTC	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.