RchiOBHm_Chr7g0180821

Converts alpha-aldose to the beta-anomer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004802
Physical Location & Seq
Forward (+)
2638847 .. 2640790
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16128

Sequence Viewer

Length: 1137 bp
ATGTATGTATTGTCATTCAGGCCCGTTTGTTTGGTGCAGGGTTTGTTGCTAACTTGTTCACCTAAGATGAATAAGATATCTTTGTATTGGTGTTTTCTTTTCCTGCCATTGATCTTGAACTTTTCTGAGGCAAATGATGAAAAGGTGGGAAATATTTATGAATTGAAGAAGGGAAATTTCTCCGTGAAGCTGACGAATTATGGAGCAACTGTGCTCTCTGTTGTTCTCCCTGATAAGAATGGGAAGTTAGATGATGTTGTTCTTGGGTTTGAATCCCTCAAAGATTACACAAATGATTCGGTCTACTTTGGGGCCACCGTTGGGCGTGTTGCTAATAGAATTGGTGGAGCTGAATTCACTTTGAATGGTCACCACTATAAGTTGGTTCCTAATGATCATGGAAAGAACACTCTCCATGGTGGCTCTAAAGGATTCAGTGATGTTCTATGGACAGTGAAGCATCACATTGTAGATAGTCACATAACGTTCACCTATAATAGTCGGGATGGTGAAGAAGGCTTCCCCGGTGATCTTTCAGTCTCAGCAACATACATGTTTATTGAACCACACGCTCTAGCTATTAAAATGGAAGCCAAAGCTCTCACCAAGGCCACACCAGTAAACCTAGCCCACCACACCTACTGGAATCTCCGCGGCCACGCCAGTGGTGACATCCTCTCTCACAAAATCCACATTTTTGGATCCAACATCACCCCAGTAAATGATGAACTCATCCCTACCGGCGACATTGCCCCCGTGAAAGGAACACCCTACGATTTCCTTGAGCCCCGAGAGATCGGTAGCAGGATCAATGAGCTGCCTGATGGTTATGACATCAACTACGTTCTGGACCCTTCCAGCCCTGAGCACTTGAGGAAGGCTGCAATGCTGCATGACAGTTTTTCTGGGAGAAAATTGGAGCTGTGGACTAACCAGCCAGGGCTGCAATTTTACACTAGTAACATGCTGGATGATGTGAAAGGGAAAGGTGGATTTGTGTATAAAAAGCATGCCGCAGTGTGCTTGGAGACACAGGGTTTCCCAGATTCCGTGAATCATCCAAATTTCCCTTCACAAATTGTGAATCCAGGAGACACTTATCTGCATGCTATGGTGTATAGGTTCACAGCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

378

Amino Acids

42.04

Weight (kDa)

6.4

Isoelectric Point (pI)

32.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 52 - 374 7.3e-95 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 654
AciI CCGC 3 cut(s) 652, 654, 1014
AclI AACGTT 1 cut(s) 485
AclWI GGATC 3 cut(s) 696, 709, 815
AcoI YGGCCR 1 cut(s) 655
AcsI RAATTY 3 cut(s) 175, 353, 1063
AfiI CCNNNNNNNGG 2 cut(s) 321, 761
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 5 cut(s) 118, 166, 272, 364, 563
AhlI ACTAGT 1 cut(s) 956
AjnI CCWGG 2 cut(s) 937, 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 1054, 1086
AleI CACNNNNGTG 1 cut(s) 663
AluBI AGCT 7 cut(s) 190, 350, 578, 599, 817, 922, 1130
AluI AGCT 7 cut(s) 190, 350, 578, 599, 817, 922, 1130
Alw21I GWGCWC 2 cut(s) 216, 870
Alw26I GTCTC 3 cut(s) 544, 1022, 1086
AlwI GGATC 3 cut(s) 696, 709, 815
Ama87I CYCGRG 1 cut(s) 789
AoxI GGCC 4 cut(s) 20, 312, 609, 655
ApeKI GCWGC 4 cut(s) 817, 881, 889, 943
ApoI RAATTY 3 cut(s) 175, 353, 1063
AspS9I GGNCC 3 cut(s) 21, 312, 850
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 8 cut(s) 51, 362, 481, 521, 539, 595, 680, 703
AvaI CYCGRG 1 cut(s) 789
AvaII GGWCC 1 cut(s) 850
BamHI GGATCC 1 cut(s) 701
BanII GRGCYC 1 cut(s) 789
Bbv12I GWGCWC 2 cut(s) 216, 870
BbvI GCAGC 4 cut(s) 804, 868, 876, 930
BccI CCATC 2 cut(s) 500, 818
BciT130I CCWGG 2 cut(s) 939, 1089
BclI TGATCA 1 cut(s) 394
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 544, 1022, 1086
BcuI ACTAGT 1 cut(s) 956
BfaI CTAG 4 cut(s) 575, 626, 957, 1135
BisI GCNGC 6 cut(s) 655, 818, 882, 890, 944, 1014
BlsI GCNGC 6 cut(s) 656, 819, 883, 891, 945, 1015
Bme1390I CCNGG 3 cut(s) 525, 939, 1089
Bme18I GGWCC 1 cut(s) 850
BmeT110I CYCGRG 1 cut(s) 789
BmgT120I GGNCC 3 cut(s) 21, 312, 850
BmiI GGNNCC 4 cut(s) 313, 387, 703, 852
BmrFI CCNGG 3 cut(s) 525, 939, 1089
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 469
BmuI ACTGGG 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 864
BpuEI CTTGAG 2 cut(s) 803, 892
BpuMI CCSGG 1 cut(s) 525
BsaJI CCNNGG 5 cut(s) 415, 523, 606, 652, 938
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 761
Bse118I RCCGGY 1 cut(s) 740
Bse1I ACTGG 4 cut(s) 617, 647, 663, 716
Bse3DI GCAATG 2 cut(s) 747, 891
BseBI CCWGG 2 cut(s) 939, 1089
BseDI CCNNGG 5 cut(s) 415, 523, 606, 652, 938
BseGI GGATG 5 cut(s) 511, 672, 732, 976, 1057
BseLI CCNNNNNNNGG 2 cut(s) 321, 761
BseMI GCAATG 2 cut(s) 747, 891
BseMII CTCAG 3 cut(s) 117, 555, 855
BseNI ACTGG 4 cut(s) 617, 647, 663, 716
BseXI GCAGC 4 cut(s) 804, 868, 876, 930
BsgI GTGCAG 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 4 cut(s) 22, 314, 611, 657
BsiHKAI GWGCWC 2 cut(s) 216, 870
BsiHKCI CYCGRG 1 cut(s) 789
BsiSI CCGG 2 cut(s) 525, 741
BslI CCNNNNNNNGG 2 cut(s) 321, 761
BsmAI GTCTC 3 cut(s) 544, 1022, 1086
BsnI GGCC 4 cut(s) 22, 314, 611, 657
BsoBI CYCGRG 1 cut(s) 789
Bsp1286I GDGCHC 3 cut(s) 216, 789, 870
Bsp143I GATC 6 cut(s) 111, 394, 529, 701, 795, 807
Bsp19I CCATGG 1 cut(s) 415
BspACI CCGC 3 cut(s) 652, 654, 1014
BspANI GGCC 4 cut(s) 22, 314, 611, 657
BspCNI CTCAG 3 cut(s) 118, 554, 856
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 4 cut(s) 313, 387, 703, 852
BspPI GGATC 3 cut(s) 696, 709, 815
BsrDI GCAATG 2 cut(s) 747, 891
BsrFI RCCGGY 1 cut(s) 740
BsrI ACTGG 4 cut(s) 617, 647, 663, 716
BssAI RCCGGY 1 cut(s) 740
BssECI CCNNGG 5 cut(s) 415, 523, 606, 652, 938
BssMI GATC 6 cut(s) 111, 394, 529, 701, 795, 807
BssT1I CCWWGG 2 cut(s) 415, 606
Bst2UI CCWGG 2 cut(s) 939, 1089
Bst4CI ACNGT 4 cut(s) 211, 319, 454, 899
BstC8I GCNNGC 2 cut(s) 1011, 1107
BstDEI CTNAG 4 cut(s) 63, 126, 541, 864
BstDSI CCRYGG 2 cut(s) 415, 652
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 5 cut(s) 511, 672, 732, 976, 1057
BstFNI CGCG 1 cut(s) 654
BstKTI GATC 6 cut(s) 114, 397, 532, 704, 798, 810
BstMAI GTCTC 3 cut(s) 544, 1022, 1086
BstMBI GATC 6 cut(s) 111, 394, 529, 701, 795, 807
BstMWI GCNNNNNNNGC 1 cut(s) 943
BstNI CCWGG 2 cut(s) 939, 1089
BstNSI RCATGY 4 cut(s) 556, 967, 1013, 1109
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 523, 937, 1087
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 4 cut(s) 804, 868, 876, 930
BstX2I RGATCY 1 cut(s) 701
BstXI CCANNNNNNTGG 2 cut(s) 665, 698
BstYI RGATCY 1 cut(s) 701
BsuRI GGCC 4 cut(s) 22, 314, 611, 657
BtgI CCRYGG 2 cut(s) 415, 652
BtsCI GGATG 5 cut(s) 511, 672, 732, 976, 1057
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 4 cut(s) 442, 459, 670, 1023
Cac8I GCNNGC 2 cut(s) 1011, 1107
Cfr10I RCCGGY 1 cut(s) 740
Cfr13I GGNCC 3 cut(s) 21, 312, 850
Cfr42I CCGCGG 1 cut(s) 655
CviAII CATG 7 cut(s) 398, 416, 553, 893, 964, 1010, 1106
DdeI CTNAG 4 cut(s) 63, 126, 541, 864
DpnI GATC 6 cut(s) 113, 396, 531, 703, 797, 809
DpnII GATC 6 cut(s) 111, 394, 529, 701, 795, 807
EaeI YGGCCR 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 415, 606
Eco24I GRGCYC 1 cut(s) 789
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 850
Eco88I CYCGRG 1 cut(s) 789
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 937, 1087
EcoRV GATATC 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 415, 606
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 2 cut(s) 415, 606
FaeI CATG 7 cut(s) 401, 419, 556, 896, 967, 1013, 1109
FatI CATG 7 cut(s) 397, 415, 552, 892, 963, 1009, 1105
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 6 cut(s) 655, 818, 882, 890, 944, 1014
FokI GGATG 5 cut(s) 518, 659, 719, 983, 1044
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 6 cut(s) 655, 818, 882, 890, 944, 1014
FspBI CTAG 4 cut(s) 575, 626, 957, 1135
GluI GCNGC 6 cut(s) 655, 818, 882, 890, 944, 1014
HaeIII GGCC 4 cut(s) 22, 314, 611, 657
HapII CCGG 2 cut(s) 525, 741
Hin1II CATG 7 cut(s) 401, 419, 556, 896, 967, 1013, 1109
HinfI GANTC 7 cut(s) 272, 296, 432, 646, 1046, 1054, 1084
HpaII CCGG 2 cut(s) 525, 741
HphI GGTGA 8 cut(s) 51, 362, 481, 521, 539, 595, 680, 703
Hpy166II GTNNAC 6 cut(s) 59, 304, 489, 622, 927, 1125
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 3 cut(s) 115, 503, 848
Hpy8I GTNNAC 6 cut(s) 59, 304, 489, 622, 927, 1125
HpyAV CCTTC 5 cut(s) 163, 509, 864, 871, 1080
HpyCH4III ACNGT 4 cut(s) 211, 319, 454, 899
HpyCH4IV ACGT 2 cut(s) 485, 843
HpyCH4V TGCA 5 cut(s) 37, 884, 892, 946, 1105
HpyF10VI GCNNNNNNNGC 1 cut(s) 943
HpyF3I CTNAG 4 cut(s) 63, 126, 541, 864
HpySE526I ACGT 2 cut(s) 485, 843
Hsp92II CATG 7 cut(s) 401, 419, 556, 896, 967, 1013, 1109
Ksp22I TGATCA 1 cut(s) 394
KspI CCGCGG 1 cut(s) 655
Kzo9I GATC 6 cut(s) 111, 394, 529, 701, 795, 807
LmnI GCTCC 3 cut(s) 203, 347, 919
Lsp1109I GCAGC 4 cut(s) 804, 868, 876, 930
LweI GCATC 1 cut(s) 469
MaeI CTAG 4 cut(s) 575, 626, 957, 1135
MaeII ACGT 2 cut(s) 485, 843
MaeIII GTNAC 4 cut(s) 368, 476, 668, 959
MalI GATC 6 cut(s) 113, 396, 531, 703, 797, 809
MboI GATC 6 cut(s) 111, 394, 529, 701, 795, 807
MboII GAAGA 2 cut(s) 178, 524
MflI RGATCY 1 cut(s) 701
MhlI GDGCHC 3 cut(s) 216, 789, 870
MluCI AATT 9 cut(s) 161, 175, 196, 339, 353, 914, 947, 1063, 1077
MmeI TCCRAC 1 cut(s) 729
MnlI CCTC 4 cut(s) 121, 287, 686, 867
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 654
MspI CCGG 2 cut(s) 525, 741
MspR9I CCNGG 3 cut(s) 525, 939, 1089
MvaI CCWGG 2 cut(s) 939, 1089
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 943
NciI CCSGG 1 cut(s) 525
NcoI CCATGG 1 cut(s) 415
NdeII GATC 6 cut(s) 111, 394, 529, 701, 795, 807
NlaIII CATG 7 cut(s) 401, 419, 556, 896, 967, 1013, 1109
NlaIV GGNNCC 4 cut(s) 313, 387, 703, 852
NmuCI GTSAC 3 cut(s) 368, 476, 668
NspI RCATGY 4 cut(s) 556, 967, 1013, 1109
OliI CACNNNNGTG 1 cut(s) 663
PaeI GCATGC 2 cut(s) 1013, 1109
PciI ACATGT 1 cut(s) 552
PfeI GAWTC 7 cut(s) 272, 296, 432, 646, 1046, 1054, 1084
PfoI TCCNGGA 1 cut(s) 1087
PkrI GCNGC 6 cut(s) 656, 819, 883, 891, 945, 1015
PscI ACATGT 1 cut(s) 552
Psp1406I AACGTT 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 937, 1087
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 937, 1087
PspN4I GGNNCC 4 cut(s) 313, 387, 703, 852
PspPI GGNCC 3 cut(s) 21, 312, 850
PsuI RGATCY 1 cut(s) 701
RseI CAYNNNNRTG 1 cut(s) 663
SacII CCGCGG 1 cut(s) 655
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 6 cut(s) 655, 818, 882, 890, 944, 1014
Sau3AI GATC 6 cut(s) 111, 394, 529, 701, 795, 807
Sau96I GGNCC 3 cut(s) 21, 312, 850
ScrFI CCNGG 3 cut(s) 525, 939, 1089
SduI GDGCHC 3 cut(s) 216, 789, 870
SfaNI GCATC 1 cut(s) 469
Sfr303I CCGCGG 1 cut(s) 655
SgrBI CCGCGG 1 cut(s) 655
SinI GGWCC 1 cut(s) 850
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 2 cut(s) 782, 871
SmoI CTYRAG 2 cut(s) 782, 871
SpeI ACTAGT 1 cut(s) 956
SphI GCATGC 2 cut(s) 1013, 1109
Sse9I AATT 9 cut(s) 161, 175, 196, 339, 353, 914, 947, 1063, 1077
SsiI CCGC 3 cut(s) 652, 654, 1014
SspI AATATT 1 cut(s) 154
SspMI CTAG 4 cut(s) 575, 626, 957, 1135
StyD4I CCNGG 3 cut(s) 523, 937, 1087
StyI CCWWGG 2 cut(s) 415, 606
TaaI ACNGT 4 cut(s) 211, 319, 454, 899
TaiI ACGT 2 cut(s) 488, 846
TaqII GACCGA 1 cut(s) 289
TasI AATT 9 cut(s) 161, 175, 196, 339, 353, 914, 947, 1063, 1077
TauI GCSGC 2 cut(s) 657, 1016
TfiI GAWTC 7 cut(s) 272, 296, 432, 646, 1046, 1054, 1084
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 4 cut(s) 442, 459, 670, 1023
TseFI GTSAC 3 cut(s) 368, 476, 668
TseI GCWGC 4 cut(s) 817, 881, 889, 943
Tsp45I GTSAC 3 cut(s) 368, 476, 668
TspDTI ATGAA 4 cut(s) 83, 153, 174, 741
TspGWI ACGGA 2 cut(s) 172, 1039
TspRI CASTG 4 cut(s) 442, 459, 670, 1023
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 3 cut(s) 175, 353, 1063
XceI RCATGY 4 cut(s) 556, 967, 1013, 1109
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 4 cut(s) 575, 626, 957, 1135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.