Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000393.1

Orthogroup ID

OG0004802

Physical Location & Seq

Genomic Coordinates Reverse (-)

79249 .. 81427

Gene Structure 2179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000393.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atggccaatatttctgtgctcctttgtttgttcattacaattctagtagcttctgggtttgctaatggttctggttatgaaccgaaggagaaggttggtgtttatgagctcaggaagggtgatttgtctgtcaaattcaccaattggggtgcaactatcatctccctaatcctgcctgacaaacacggaaagctggctgatgttgttctggggtatgattcagtgaatgagtacaagaatgatacttcatacttcggtgctattgtcggacgcgttgctaacagaatcggtggcgctcaatttactttgaatggaactcattacaagctagttgctaatgaaggaaaaaacatgcttcatggtgggcttagaggatttagtgatgttgtttggaaagtgaagaagtataagaatgaaggtcatgctccttccattgtcttcacttatcatagtgctgatggggaacaagggtttcctggagatgttattgtcactgtcagctacacactccttggagacagacaattgattgtgaaaatgaaagcaaaggccctaaacaagccaactccagtgaatctagctcagcacacttactggaaccttggcggccacaatagtggtgacattctctcccaacacatccagatctttgcatccaaaatcactctggtagatagcggtctcatccccaccggaaaatttgcatccgtgaaaggcacaccctatgatttcctcaagcctcaagcagttggaagcaggatcaacaagcttacggcaaccaaaggttatgacatcaactacgtgcttgatggcccagctggcaacaagttgaagcgcgccgcagtggtgcgtgacagcaagtcaggaaggatgatggagctctcaacaaatgttcccggtatgcagttctacacaagcaactatctccaggatgtgaaggggaaaggtgggtttgtataccaaccacgtgcagcattgtgtttggaaacccagggatttcctgatgctgtgaaccaccctaatttcccttcaacaattgtgactccaacaaagtcctataggcattatatgctgttcaagttttcaactacagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004034 GO:0005975 GO:0005996 GO:0006006 GO:0006012 GO:0008150 GO:0008152 GO:0009056 GO:0016052 GO:0016853 GO:0016854 GO:0016857 GO:0019318 GO:0019320 GO:0019388 GO:0033499 GO:0044238 GO:0044281 GO:0044282 GO:0046365 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00010 ko00052 ko01100 ko01110 ko01120 ko01130 map00010 map00052 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

365

Amino Acids

39.86

Weight (kDa)

9.54

Isoelectric Point (pI)

22.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47800
fragaria_vesca	FvH4_5g15261 FvH4_6g49081
malus_domestica	MD14G1196700.v1.1 MD17G1048800.v1.1
prunus_persica	Prupe.3G270200_v2.0.a1 Prupe.5G188800_v2.0.a1 Prupe.5G188800_v2.0.a1
pyrus_communis	pycom14g16350 pycom17g04380
rosa_chinensis	RchiOBHm_Chr2g0168911 RchiOBHm_Chr7g0180821
rosa_laevigata	RLG00000005227 RLG00000021813
rosa_multiflora	Rmu_sc0007457.1_g000006 Rmu_ssc0000393.1_g000013
rosa_roxburghii	Rroxscaffold_2G00082600 Rroxscaffold_3G00272500
rosa_rugosa	Rorug02G0536000 Rorug06G0436400.1 Rorug06G0436500.1 Rorug06G0436600
rosa_samantha	Rh2AG607000 Rh2BG619800 Rh2CG588400 Rh2DG630500 Rh7BG037900 Rh7CG039400 Rh7DG037900
rosa_wichuraiana	Rw2G050330 Rw7G003140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	957
AccII	CGCG	2 cut(s)	273, 837
AciI	CCGC	3 cut(s)	606, 678, 840
AclWI	GGATC	1 cut(s)	767
AcoI	YGGCCR	2 cut(s)	3, 607
AcsI	RAATTY	2 cut(s)	134, 698
AcvI	CACGTG	1 cut(s)	968
AfaI	GTAC	1 cut(s)	233
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	5 cut(s)	310, 832, 1032, 1078, 1086
AhdI	GACNNNNNGTC	1 cut(s)	859
AjnI	CCWGG	3 cut(s)	475, 927, 990
AleI	CACNNNNGTG	1 cut(s)	615
Alw21I	GWGCWC	3 cut(s)	21, 111, 882
Alw26I	GTCTC	2 cut(s)	510, 686
AlwI	GGATC	1 cut(s)	767
AoxI	GGCC	4 cut(s)	3, 549, 607, 811
ApeKI	GCWGC	1 cut(s)	971
ApoI	RAATTY	2 cut(s)	134, 698
AspLEI	GCGC	3 cut(s)	296, 837, 839
AspS9I	GGNCC	2 cut(s)	550, 812
AsuC2I	CCSGG	1 cut(s)	897
AsuHPI	GGTGA	3 cut(s)	130, 131, 632
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	111, 882
BbrPI	CACGTG	1 cut(s)	968
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	3 cut(s)	21, 111, 882
BbvI	GCAGC	1 cut(s)	983
BccI	CCATC	3 cut(s)	452, 803, 868
BceAI	ACGGC	1 cut(s)	789
BciT130I	CCWGG	3 cut(s)	477, 929, 992
BcnI	CCSGG	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	510, 686
BfaI	CTAG	3 cut(s)	44, 329, 578
BfmI	CTRYAG	2 cut(s)	1057, 1089
BfoI	RGCGCY	1 cut(s)	297
BglI	GCCNNNNNGGC	1 cut(s)	819
BglII	AGATCT	1 cut(s)	645
BisI	GCNGC	3 cut(s)	607, 840, 972
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	3 cut(s)	608, 841, 973
Bme1390I	CCNGG	4 cut(s)	477, 897, 929, 992
BmeRI	GACNNNNNGTC	1 cut(s)	859
BmgT120I	GGNCC	2 cut(s)	550, 812
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	4 cut(s)	477, 897, 929, 992
BmsI	GCATC	3 cut(s)	662, 713, 994
BpiI	GAAGAC	1 cut(s)	430
BpmI	CTGGAG	3 cut(s)	498, 552, 911
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	2 cut(s)	719, 726
BpuMI	CCSGG	1 cut(s)	897
BsaAI	YACGTR	2 cut(s)	802, 968
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	4 cut(s)	511, 601, 990, 991
BsaWI	WCCGGW	1 cut(s)	692
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bse1I	ACTGG	2 cut(s)	569, 599
BseBI	CCWGG	3 cut(s)	477, 929, 992
BseDI	CCNNGG	4 cut(s)	511, 601, 990, 991
BseGI	GGATG	6 cut(s)	639, 653, 684, 704, 876, 937
BseMII	CTCAG	2 cut(s)	124, 596
BseNI	ACTGG	2 cut(s)	569, 599
BsePI	GCGCGC	1 cut(s)	835
BseXI	GCAGC	1 cut(s)	983
BseYI	CCCAGC	1 cut(s)	814
BsgI	GTGCAG	1 cut(s)	990
Bsh1236I	CGCG	2 cut(s)	273, 837
BshFI	GGCC	4 cut(s)	5, 551, 609, 813
BsiHKAI	GWGCWC	3 cut(s)	21, 111, 882
BsiSI	CCGG	2 cut(s)	693, 897
BsmAI	GTCTC	2 cut(s)	510, 686
BsnI	GGCC	4 cut(s)	5, 551, 609, 813
Bso31I	GGTCTC	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	21, 111, 882
Bsp143I	GATC	2 cut(s)	645, 759
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	3 cut(s)	606, 678, 840
BspANI	GGCC	4 cut(s)	5, 551, 609, 813
BspCNI	CTCAG	2 cut(s)	123, 595
BspFNI	CGCG	2 cut(s)	273, 837
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	569, 599
BssECI	CCNNGG	4 cut(s)	511, 601, 990, 991
BssHII	GCGCGC	1 cut(s)	835
BssMI	GATC	2 cut(s)	645, 759
BssNAI	GTATAC	1 cut(s)	958
BssT1I	CCWWGG	2 cut(s)	511, 601
Bst1107I	GTATAC	1 cut(s)	958
Bst2UI	CCWGG	3 cut(s)	477, 929, 992
Bst4CI	ACNGT	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	1069
BstBAI	YACGTR	2 cut(s)	802, 968
BstC8I	GCNNGC	3 cut(s)	195, 820, 837
BstDEI	CTNAG	3 cut(s)	110, 368, 582
BstF5I	GGATG	6 cut(s)	639, 653, 684, 704, 876, 937
BstFNI	CGCG	2 cut(s)	273, 837
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	3 cut(s)	296, 837, 839
BstKTI	GATC	2 cut(s)	648, 762
BstMAI	GTCTC	2 cut(s)	510, 686
BstMBI	GATC	2 cut(s)	645, 759
BstMWI	GCNNNNNNNGC	2 cut(s)	819, 1069
BstNI	CCWGG	3 cut(s)	477, 929, 992
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	4 cut(s)	475, 895, 927, 990
BstSFI	CTRYAG	2 cut(s)	1057, 1089
BstUI	CGCG	2 cut(s)	273, 837
BstV1I	GCAGC	1 cut(s)	983
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	645
BstZ17I	GTATAC	1 cut(s)	958
BsuRI	GGCC	4 cut(s)	5, 551, 609, 813
BtsCI	GGATG	6 cut(s)	639, 653, 684, 704, 876, 937
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	4 cut(s)	228, 492, 576, 849
Cac8I	GCNNGC	3 cut(s)	195, 820, 837
CfoI	GCGC	3 cut(s)	296, 837, 839
Cfr13I	GGNCC	2 cut(s)	550, 812
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	352, 359, 422
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	110, 368, 582
DpnI	GATC	2 cut(s)	647, 761
DpnII	GATC	2 cut(s)	645, 759
DriI	GACNNNNNGTC	1 cut(s)	859
EaeI	YGGCCR	2 cut(s)	3, 607
Eam1105I	GACNNNNNGTC	1 cut(s)	859
Ecl136II	GAGCTC	2 cut(s)	109, 880
Eco130I	CCWWGG	2 cut(s)	511, 601
Eco24I	GRGCYC	2 cut(s)	111, 882
Eco31I	GGTCTC	1 cut(s)	686
Eco53kI	GAGCTC	2 cut(s)	109, 880
Eco72I	CACGTG	1 cut(s)	968
EcoICRI	GAGCTC	2 cut(s)	109, 880
EcoO109I	RGGNCCY	1 cut(s)	550
EcoRII	CCWGG	3 cut(s)	475, 927, 990
EcoT14I	CCWWGG	2 cut(s)	511, 601
EcoT38I	GRGCYC	2 cut(s)	111, 882
ErhI	CCWWGG	2 cut(s)	511, 601
FaeI	CATG	3 cut(s)	355, 362, 425
FatI	CATG	3 cut(s)	351, 358, 421
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	3 cut(s)	607, 840, 972
FokI	GGATG	6 cut(s)	626, 640, 671, 691, 883, 944
FriOI	GRGCYC	2 cut(s)	111, 882
Fsp4HI	GCNGC	3 cut(s)	607, 840, 972
FspBI	CTAG	3 cut(s)	44, 329, 578
GlaI	GCGC	3 cut(s)	295, 836, 838
GluI	GCNGC	3 cut(s)	607, 840, 972
GsaI	CCCAGC	1 cut(s)	818
GsuI	CTGGAG	3 cut(s)	498, 552, 911
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	4 cut(s)	5, 551, 609, 813
HapII	CCGG	2 cut(s)	693, 897
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	3 cut(s)	296, 837, 839
Hin1II	CATG	3 cut(s)	355, 362, 425
Hin6I	GCGC	3 cut(s)	294, 835, 837
HinP1I	GCGC	3 cut(s)	294, 835, 837
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	4 cut(s)	218, 285, 574, 1042
HpaII	CCGG	2 cut(s)	693, 897
HphI	GGTGA	3 cut(s)	130, 131, 632
Hpy166II	GTNNAC	2 cut(s)	958, 1012
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	4 cut(s)	112, 643, 864, 1001
Hpy8I	GTNNAC	2 cut(s)	958, 1012
HpyAV	CCTTC	9 cut(s)	79, 85, 109, 335, 410, 438, 861, 931, 1038
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	2 cut(s)	801, 967
HpyCH4V	TGCA	5 cut(s)	152, 653, 704, 904, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	819, 1069
HpyF3I	CTNAG	3 cut(s)	110, 368, 582
HpySE526I	ACGT	2 cut(s)	801, 967
Hsp92II	CATG	3 cut(s)	355, 362, 425
HspAI	GCGC	3 cut(s)	294, 835, 837
Kzo9I	GATC	2 cut(s)	645, 759
LmnI	GCTCC	3 cut(s)	24, 430, 877
Lsp1109I	GCAGC	1 cut(s)	983
LweI	GCATC	3 cut(s)	662, 713, 994
MaeI	CTAG	3 cut(s)	44, 329, 578
MaeII	ACGT	2 cut(s)	801, 967
MaeIII	GTNAC	4 cut(s)	490, 620, 851, 1039
MalI	GATC	2 cut(s)	647, 761
MboI	GATC	2 cut(s)	645, 759
MboII	GAAGA	2 cut(s)	412, 430
MfeI	CAATTG	3 cut(s)	142, 524, 1035
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	3 cut(s)	21, 111, 882
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	39, 134, 142, 299, 524, 698, 1021, 1035
MluI	ACGCGT	1 cut(s)	271
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1036
MmeI	TCCRAC	3 cut(s)	247, 730, 1070
MnlI	CCTC	3 cut(s)	365, 743, 750
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1096
MslI	CAYNNNNRTG	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	2 cut(s)	693, 897
MspR9I	CCNGG	4 cut(s)	477, 897, 929, 992
MunI	CAATTG	3 cut(s)	142, 524, 1035
MvaI	CCWGG	3 cut(s)	477, 929, 992
MvnI	CGCG	2 cut(s)	273, 837
MwoI	GCNNNNNNNGC	2 cut(s)	819, 1069
NciI	CCSGG	1 cut(s)	897
NdeII	GATC	2 cut(s)	645, 759
NlaIII	CATG	3 cut(s)	355, 362, 425
NlaIV	GGNNCC	1 cut(s)	599
NmuCI	GTSAC	4 cut(s)	490, 620, 851, 1039
NspI	RCATGY	1 cut(s)	355
OliI	CACNNNNGTG	1 cut(s)	615
PasI	CCCWGGG	1 cut(s)	991
PauI	GCGCGC	1 cut(s)	835
PfeI	GAWTC	3 cut(s)	218, 285, 574
PfoI	TCCNGGA	2 cut(s)	475, 927
PkrI	GCNGC	3 cut(s)	608, 841, 973
PleI	GAGTC	1 cut(s)	1036
PmaCI	CACGTG	1 cut(s)	968
PmlI	CACGTG	1 cut(s)	968
PpsI	GAGTC	1 cut(s)	1036
Ppu21I	YACGTR	2 cut(s)	802, 968
Psp124BI	GAGCTC	2 cut(s)	111, 882
Psp6I	CCWGG	3 cut(s)	475, 927, 990
PspCI	CACGTG	1 cut(s)	968
PspFI	CCCAGC	1 cut(s)	814
PspGI	CCWGG	3 cut(s)	475, 927, 990
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	2 cut(s)	550, 812
PsuI	RGATCY	1 cut(s)	645
PteI	GCGCGC	1 cut(s)	835
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	615
SacI	GAGCTC	2 cut(s)	111, 882
SaqAI	TTAA	1 cut(s)	1096
SatI	GCNGC	3 cut(s)	607, 840, 972
Sau3AI	GATC	2 cut(s)	645, 759
Sau96I	GGNCC	2 cut(s)	550, 812
SchI	GAGTC	1 cut(s)	1036
ScrFI	CCNGG	4 cut(s)	477, 897, 929, 992
SduI	GDGCHC	3 cut(s)	21, 111, 882
SfaNI	GCATC	3 cut(s)	662, 713, 994
SfcI	CTRYAG	2 cut(s)	1057, 1089
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	2 cut(s)	734, 741
SmoI	CTYRAG	2 cut(s)	734, 741
Sse9I	AATT	8 cut(s)	39, 134, 142, 299, 524, 698, 1021, 1035
SsiI	CCGC	3 cut(s)	606, 678, 840
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	3 cut(s)	44, 329, 578
SstI	GAGCTC	2 cut(s)	111, 882
StyD4I	CCNGG	4 cut(s)	475, 895, 927, 990
StyI	CCWWGG	2 cut(s)	511, 601
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	2 cut(s)	804, 970
TasI	AATT	8 cut(s)	39, 134, 142, 299, 524, 698, 1021, 1035
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	2 cut(s)	609, 842
TfiI	GAWTC	3 cut(s)	218, 285, 574
Tru1I	TTAA	1 cut(s)	1096
Tru9I	TTAA	1 cut(s)	1096
TscAI	CASTG	4 cut(s)	228, 499, 576, 849
TseFI	GTSAC	4 cut(s)	490, 620, 851, 1039
TseI	GCWGC	1 cut(s)	971
Tsp45I	GTSAC	4 cut(s)	490, 620, 851, 1039
TspDTI	ATGAA	7 cut(s)	22, 93, 237, 347, 354, 429, 554
TspGWI	ACGGA	2 cut(s)	201, 697
TspRI	CASTG	4 cut(s)	228, 499, 576, 849
XapI	RAATTY	2 cut(s)	134, 698
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	3 cut(s)	44, 329, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.